genome.fa.s16.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  147  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44087415--44087476	25	2.5	25	79	7	72	50	3	0	46	1.17
44087573--44087623	14	3.4	14	82	12	66	56	1	0	41	1.10
44089882--44089925	20	2.1	21	87	4	63	13	22	9	54	1.67
44092422--44092466	23	2.1	23	88	12	69	64	4	0	31	1.13
44092482--44092900	208	2.0	208	98	0	802	52	8	15	24	1.69
44093425--44093465	13	3.1	13	82	6	55	73	4	19	2	1.13
44101626--44101668	21	2.0	21	95	0	77	27	27	20	23	1.99
44105363--44105495	58	2.3	58	84	2	169	21	27	25	26	1.99
44108104--44108152	24	2.0	25	84	4	64	32	22	24	20	1.98
44108197--44108316	64	1.9	64	82	0	150	35	22	18	23	1.95
44113735--44113782	13	3.7	13	88	0	78	39	27	12	20	1.89
44119688--44119765	39	2.0	39	100	0	156	33	20	12	33	1.91
44120514--44120555	16	2.8	16	78	7	52	38	21	0	40	1.53
44123249--44123299	10	5.1	10	76	9	50	9	15	0	74	1.06
44125730--44125769	14	2.9	14	84	0	53	32	7	17	42	1.77
44125753--44125792	20	2.0	20	90	0	62	27	10	12	50	1.72
44125738--44125804	34	1.9	35	90	3	109	31	8	13	46	1.74
44125732--44125808	14	5.0	15	71	20	52	32	9	15	42	1.78
44140938--44141013	31	2.5	31	77	0	80	32	10	10	46	1.73
44143636--44143663	14	2.0	14	100	0	56	57	0	0	42	0.99
44154156--44154193	16	2.4	16	86	4	51	2	15	2	78	0.97
44159735--44160088	125	2.8	127	88	3	536	30	15	21	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44162247--44162473	116	2.0	116	91	0	373	41	9	10	38	1.72
44162478--44162813	23	14.1	23	75	15	251	28	0	24	46	1.59
44162494--44162578	29	3.1	29	77	19	101	24	1	28	45	1.60
44162571--44162630	21	2.8	22	85	7	79	30	0	23	46	1.52
44162479--44162821	146	2.4	142	85	7	437	28	0	24	46	1.58
44162632--44162692	28	2.2	28	93	0	104	27	3	26	42	1.71
44162623--44162705	28	3.1	27	70	18	84	31	2	21	44	1.65
44162599--44162821	73	3.0	73	78	13	258	29	0	23	46	1.58
44162728--44162771	21	2.1	21	87	4	63	20	0	31	47	1.50
44162733--44162761	14	2.0	15	93	6	51	17	0	34	48	1.47
44162683--44162790	50	2.2	51	88	6	159	26	0	26	46	1.53
44163295--44163326	7	4.6	7	100	0	64	59	12	0	28	1.34
44164467--44164587	51	2.4	51	91	1	190	45	0	25	28	1.59
44164554--44164609	22	2.5	22	91	2	85	44	0	30	25	1.54
44165283--44165347	29	2.2	29	83	2	76	29	6	1	63	1.28
44166800--44166852	16	3.3	16	94	0	97	37	5	33	22	1.78
44166832--44166921	44	2.0	45	84	2	119	28	3	27	40	1.72
44167038--44167098	18	3.3	18	84	9	79	60	1	1	36	1.16
44167094--44167137	22	2.0	23	86	4	63	56	6	0	36	1.26
44170901--44170930	14	2.1	14	100	0	60	20	6	13	60	1.55
44171043--44171368	90	3.6	90	88	0	483	26	5	15	52	1.64
44174444--44174510	25	2.7	25	83	4	82	32	20	26	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44174598--44174645	25	1.9	25	91	0	78	41	20	20	16	1.90
44175698--44175730	17	1.9	17	88	11	50	30	12	12	45	1.78
44176927--44177160	5	43.4	5	68	22	59	25	15	0	57	1.44
44176932--44176964	12	2.8	12	100	0	66	15	24	0	60	1.35
44176927--44177160	17	14.5	15	68	21	59	25	15	0	57	1.44
44176927--44176985	29	2.1	28	87	9	84	18	22	0	59	1.38
44176978--44177034	18	3.1	18	80	14	62	24	10	0	64	1.24
44176972--44177030	21	2.7	21	81	5	64	25	11	0	62	1.29
44177138--44177188	17	3.1	16	78	18	52	25	9	0	64	1.24
44177308--44177350	21	2.0	21	82	8	52	32	6	0	60	1.23
44177704--44178247	113	4.8	112	75	10	424	30	18	23	27	1.98
44178761--44178912	81	1.9	82	81	4	191	27	2	23	46	1.66
44179291--44179344	7	7.6	7	79	4	63	3	0	50	46	1.19
44179300--44179358	14	4.2	14	76	8	57	6	0	44	49	1.29
44179291--44179358	21	3.2	21	79	10	68	5	0	45	48	1.26
44181568--44181604	10	3.7	10	92	0	56	43	0	0	56	0.99
44181744--44181882	67	2.1	67	95	2	253	36	5	12	45	1.65
44181978--44182061	36	2.5	33	81	14	91	39	5	2	52	1.39
44182010--44182083	34	2.1	37	82	7	91	39	6	4	50	1.48
44182114--44182162	13	3.8	12	82	15	53	44	10	2	42	1.49
44182410--44182611	16	12.1	16	63	26	64	47	18	2	31	1.62
44182503--44182740	9	27.4	9	70	15	155	45	21	2	31	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44188621--44188864	42	5.8	42	93	0	400	23	20	21	34	1.96
44188621--44188864	83	2.9	84	90	1	400	23	20	21	34	1.96
44188623--44188864	125	1.9	125	93	0	412	23	20	21	35	1.96
44188905--44188949	22	2.0	22	91	0	72	40	26	22	11	1.87
44189019--44189159	21	6.2	21	71	21	97	24	11	0	63	1.32
44189016--44189191	26	7.2	26	71	19	139	23	13	0	62	1.34
44189016--44189212	48	4.1	48	91	2	306	23	12	1	63	1.34
44189016--44189212	49	4.1	47	90	5	295	23	12	1	63	1.34
44189243--44189438	44	4.5	44	89	0	284	35	2	12	50	1.52
44193245--44193375	45	2.9	44	81	14	126	38	4	3	54	1.37
44193276--44193375	23	4.4	23	76	20	95	39	4	1	56	1.25
44193267--44193381	23	5.0	23	75	12	94	38	5	1	54	1.33
44193276--44193395	45	2.7	43	82	12	118	38	5	1	55	1.32
44193322--44193395	24	3.3	20	72	17	58	39	5	1	54	1.32
44195089--44195114	12	2.2	12	100	0	52	76	15	7	0	0.99
44202621--44202673	20	2.7	20	82	2	63	50	0	1	47	1.12
44202936--44202963	5	5.6	5	100	0	56	17	0	17	64	1.30
44203064--44203130	31	2.1	32	91	5	109	47	7	5	38	1.56
44206747--44206802	15	3.8	15	76	17	55	28	0	1	69	0.98
44206758--44206804	24	2.0	24	87	8	69	31	0	2	65	1.04
44212180--44212229	15	3.6	15	74	20	54	64	0	2	34	1.05
44212180--44212232	26	2.0	26	92	0	88	64	0	1	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44214458--44214487	12	2.4	13	94	5	53	53	0	0	46	1.00
44217854--44218779	461	2.0	461	99	0	1816	34	9	18	37	1.84
44222015--44222246	96	2.4	100	88	4	348	45	10	10	33	1.73
44227468--44227559	22	4.0	22	76	9	87	39	18	25	17	1.92
44227514--44227595	25	3.3	25	87	0	119	39	19	24	17	1.92
44228552--44228584	5	6.6	5	92	0	57	54	0	3	42	1.15
44235487--44235538	24	2.2	24	89	0	77	55	9	1	32	1.43
44237456--44237507	24	2.2	24	89	0	77	55	9	1	32	1.43
44249382--44249440	29	2.0	29	83	0	73	23	15	22	38	1.92
44251175--44251280	54	2.0	54	92	0	176	27	9	15	48	1.75
44251071--44251351	128	2.2	124	88	3	402	30	12	13	43	1.81
44251231--44251497	76	3.6	75	91	3	407	26	17	14	40	1.89
44254783--44254846	19	3.3	19	84	6	58	62	3	1	32	1.20
44254804--44254846	19	2.3	19	100	0	86	62	4	0	32	1.15
44257554--44257589	12	3.0	12	92	8	56	83	0	8	8	0.82
44258443--44259239	44	18.0	44	79	5	703	29	22	16	30	1.96
44258445--44259243	89	9.0	89	82	6	781	29	23	16	30	1.96
44258445--44259238	266	3.0	264	87	4	1068	29	23	16	30	1.96
44264308--44264358	3	16.0	3	77	18	50	29	1	5	62	1.29
44264320--44264358	16	2.5	15	88	12	53	30	0	5	64	1.15
44267509--44267566	29	2.0	30	93	3	100	13	6	22	56	1.61
44267509--44267581	30	2.4	29	84	4	74	13	5	23	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44267522--44267603	37	2.2	38	84	6	105	13	6	24	56	1.60
44267867--44267893	7	3.9	7	100	0	54	44	29	11	14	1.80
44268835--44268943	13	8.2	13	82	4	128	36	4	4	54	1.42
44268824--44268943	27	4.5	26	81	4	105	37	4	5	53	1.42
44268836--44268943	40	2.7	40	91	0	171	37	4	4	53	1.42
44269112--44269242	13	10.2	13	78	9	126	37	3	4	54	1.39
44269147--44269242	40	2.4	40	91	3	149	36	3	5	55	1.38
44269175--44269274	27	3.7	27	80	5	105	37	4	5	54	1.41
44268694--44269298	299	2.0	299	94	0	1068	37	5	5	51	1.49
44271696--44271741	9	5.1	9	91	0	65	34	13	39	13	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170