genome.fa.s16.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  117  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35905840--35906266	177	2.4	175	91	4	689	36	7	1	54	1.37
35907789--35907880	48	1.9	48	100	0	184	28	15	23	32	1.95
35912356--35912383	13	2.2	13	100	0	56	42	14	14	28	1.84
35914192--35914216	11	2.3	11	100	0	50	64	8	8	20	1.46
35918142--35918240	52	2.0	52	80	11	118	45	6	2	46	1.39
35918197--35918230	17	2.0	17	94	0	59	44	5	0	50	1.26
35918202--35918249	17	3.0	16	79	17	55	45	6	2	45	1.40
35918246--35918424	54	3.1	54	65	22	137	41	2	7	49	1.43
35918242--35918429	61	3.1	61	68	14	190	41	2	6	49	1.41
35918290--35918324	18	2.0	17	88	5	52	40	0	0	60	0.97
35918239--35918461	120	1.9	120	97	0	419	42	2	6	49	1.40
35918410--35918444	18	2.0	17	88	5	52	45	0	0	54	0.99
35918273--35918458	54	3.2	54	66	21	142	43	1	4	50	1.33
35918398--35918669	144	1.9	147	94	3	487	47	2	3	46	1.34
35918554--35918588	18	2.0	17	88	5	52	45	0	0	54	0.99
35918735--35918844	45	2.6	44	81	8	131	30	27	5	36	1.79
35918823--35918855	16	2.1	16	94	0	57	30	36	0	33	1.58
35918836--35918878	21	2.0	21	95	0	77	34	37	0	27	1.57
35920282--35920316	16	2.2	16	90	5	54	20	0	14	65	1.26
35923395--35923488	19	4.7	19	93	2	134	36	9	15	38	1.81
35923395--35923488	40	2.4	38	89	7	134	36	9	15	38	1.81
35923697--35923741	23	2.0	23	81	0	54	22	0	15	62	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35923972--35924000	12	2.3	13	94	5	51	20	0	0	79	0.74
35924029--35924090	23	2.8	23	78	7	58	33	4	8	53	1.52
35929470--35929673	93	2.2	92	81	10	218	48	12	7	32	1.68
35930782--35930811	14	2.1	14	100	0	60	26	0	30	43	1.55
35935460--35935510	20	2.6	19	79	14	50	23	29	7	39	1.83
35935628--35935705	33	2.4	33	82	0	93	15	38	23	23	1.92
35937089--35937155	29	2.3	29	84	0	80	31	11	22	34	1.90
35941904--35941941	20	1.9	20	94	0	67	21	18	13	47	1.82
35949433--35949612	39	4.6	39	87	4	229	46	17	2	32	1.63
35952656--35952707	27	1.9	27	84	0	68	23	25	17	34	1.96
35953077--35953176	49	2.0	49	94	0	173	24	24	25	27	2.00
35954594--35954635	20	2.2	20	86	4	59	45	11	21	21	1.84
35958637--35958669	11	2.8	12	86	4	50	48	12	3	36	1.56
35958980--35959009	15	2.0	15	93	0	51	66	10	6	16	1.41
35959762--35959793	14	2.3	14	100	0	64	62	0	0	37	0.95
35959764--35959806	11	3.6	11	84	9	50	55	0	0	44	0.99
35963984--35964052	36	1.9	36	90	0	111	24	13	30	31	1.93
35974255--35974292	13	3.0	13	82	17	53	39	0	15	44	1.47
35975876--35976023	73	2.0	73	98	0	287	37	9	8	44	1.68
35977806--35977909	49	2.1	49	85	5	140	29	7	10	51	1.64
35979579--35979611	14	2.3	15	89	5	50	21	0	3	75	0.93
35979719--35979902	38	4.7	37	68	18	95	44	1	4	50	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35979877--35979929	23	2.3	22	81	9	61	47	0	3	49	1.19
35981837--35981880	15	2.9	15	79	0	52	25	52	9	13	1.70
35985353--35985393	2	20.5	2	100	0	82	48	0	0	51	1.00
35988016--35988621	44	13.9	44	66	16	156	28	24	18	29	1.98
35988023--35988140	45	2.7	44	78	4	121	28	22	16	31	1.96
35988165--35988445	129	2.2	129	89	1	420	29	23	18	27	1.98
35988297--35988933	217	2.9	217	89	0	972	27	22	20	29	1.98
35988374--35988924	44	12.8	44	68	15	206	27	22	20	29	1.99
36001025--36001049	12	2.1	12	100	0	50	84	0	0	16	0.63
36001127--36001189	32	2.0	32	93	3	110	74	9	11	4	1.20
36003063--36003091	14	2.1	14	100	0	58	44	6	27	20	1.77
36004774--36004818	17	2.6	17	85	3	63	64	4	2	28	1.25
36007103--36007154	26	2.0	26	100	0	104	30	11	11	46	1.76
36012997--36013154	63	2.5	63	89	0	244	23	24	14	37	1.92
36024461--36024544	44	1.9	44	90	0	132	27	13	13	46	1.79
36026730--36026761	16	2.1	16	94	5	57	31	0	18	50	1.48
36030573--36030624	23	2.2	24	96	3	97	57	3	0	38	1.17
36030608--36030649	18	2.3	18	80	8	50	54	0	0	45	0.99
36030937--36030980	10	4.6	9	86	11	52	34	2	0	63	1.07
36030928--36030980	19	2.8	20	78	16	58	32	3	0	64	1.12
36030923--36031028	29	3.6	30	74	14	94	41	2	0	55	1.14
36040488--36040651	84	2.0	84	84	7	217	60	9	18	10	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36050496--36050575	41	2.0	41	84	0	106	20	18	28	32	1.96
36055417--36055453	19	1.9	19	88	0	56	43	2	10	43	1.53
36059258--36059298	19	2.2	19	86	0	55	34	4	12	48	1.62
36059336--36059417	41	2.0	41	97	0	155	30	4	15	48	1.66
36060392--36060416	13	1.9	13	100	0	50	32	20	0	48	1.50
36063544--36063568	2	12.5	2	100	0	50	48	0	0	52	1.00
36071862--36072019	30	5.3	30	89	3	237	12	29	24	34	1.91
36072915--36072956	20	2.0	22	86	9	61	50	16	11	21	1.77
36099207--36099288	9	8.7	9	80	10	83	43	26	4	24	1.74
36099206--36099285	20	4.1	20	85	6	110	45	27	5	22	1.73
36099205--36099288	29	2.9	29	77	13	100	45	26	4	23	1.73
36099284--36099392	17	6.1	17	69	16	69	49	15	2	32	1.59
36099286--36099397	37	3.0	36	92	5	179	46	16	3	33	1.64
36099286--36099338	20	2.9	18	75	8	54	49	16	1	32	1.57
36102120--36102147	11	2.5	11	100	0	56	28	0	0	71	0.86
36102212--36102250	16	2.5	16	95	4	71	53	0	10	35	1.35
36102440--36102475	15	2.4	15	95	0	63	44	0	11	44	1.39
36102455--36102549	42	2.2	43	86	3	129	40	4	15	40	1.67
36102527--36102574	25	1.9	25	100	0	96	35	6	25	33	1.81
36106998--36107065	30	2.3	30	92	0	109	22	30	17	29	1.97
36111800--36111838	18	2.2	18	90	0	60	33	25	0	41	1.56
36112708--36112753	23	2.0	24	87	12	69	76	6	6	10	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36112707--36112759	24	2.2	25	80	16	67	73	5	11	9	1.24
36114481--36114531	15	3.4	15	68	10	50	45	7	7	39	1.62
36114482--36114544	30	2.1	31	96	3	119	49	6	6	38	1.54
36116549--36116797	50	4.8	50	84	4	275	20	28	24	26	1.99
36116548--36116797	100	2.4	104	86	6	348	20	28	24	26	1.99
36116892--36116923	13	2.5	13	94	0	55	56	12	0	31	1.37
36126016--36126042	9	3.0	9	100	0	54	44	11	0	44	1.39
36126885--36126937	26	2.0	26	85	0	70	22	24	24	28	2.00
36127688--36127721	8	4.2	8	85	14	52	73	2	0	23	0.97
36129764--36129926	74	2.2	72	82	6	195	36	14	12	36	1.84
36129884--36130205	161	2.0	161	98	0	617	35	17	21	25	1.95
36132566--36132700	66	2.0	66	91	0	216	42	20	8	28	1.82
36138085--36138157	38	1.9	38	97	0	137	21	2	31	43	1.67
36144550--36144613	28	2.2	29	86	5	85	65	0	1	32	1.02
36147309--36147390	42	2.0	42	85	4	112	17	20	19	42	1.89
36147364--36147416	21	2.5	21	78	0	61	9	26	24	39	1.86
36148656--36148766	55	2.0	55	98	0	213	46	20	14	18	1.83
36149018--36149149	46	2.9	45	88	2	174	29	24	9	36	1.88
36155330--36155461	46	2.9	45	87	2	165	28	24	10	37	1.88
36161346--36161446	42	2.4	42	83	3	123	12	22	21	42	1.87
36166053--36166188	66	2.1	66	97	0	254	30	7	18	44	1.77
36166771--36166797	14	1.9	14	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36171077--36171473	207	1.9	207	81	2	474	18	19	23	38	1.93
36171078--36171505	138	3.1	138	83	0	462	17	19	23	38	1.93
36171073--36171475	69	5.8	69	82	2	405	18	19	23	38	1.93
36176357--36176431	39	1.9	39	83	5	98	14	32	20	33	1.92
36178530--36178592	24	2.6	23	73	16	56	33	3	6	57	1.40
36183336--36183410	38	2.0	39	81	5	91	38	1	0	60	1.06
36183365--36183419	29	2.0	28	89	10	87	27	1	0	70	0.97
36183365--36183431	22	2.9	22	77	8	71	28	1	0	70	0.96
36186391--36186437	15	3.2	15	82	11	53	65	6	4	23	1.33
36186441--36186486	19	2.4	18	82	10	56	78	4	2	15	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170