genome.fa.s16.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  112  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34427672--34427879	79	2.6	79	83	6	260	19	26	19	33	1.96
34427672--34427888	119	1.8	119	84	2	301	19	26	19	34	1.96
34427672--34427914	79	3.1	76	80	8	254	19	25	19	34	1.96
34427672--34427914	119	2.0	119	81	3	283	19	25	19	34	1.96
34428995--34429156	40	4.1	40	87	1	227	19	31	19	30	1.96
34429051--34429116	20	3.3	20	69	12	64	18	34	16	30	1.93
34428995--34429156	79	2.0	80	86	1	227	19	31	19	30	1.96
34448056--34448093	20	1.9	20	84	10	51	60	7	0	31	1.25
34450148--34450196	13	3.6	13	80	5	53	30	2	4	63	1.24
34450741--34450784	17	2.3	18	81	18	54	22	2	4	70	1.17
34454370--34454413	14	2.9	15	80	10	54	31	31	15	20	1.94
34460402--34460444	16	2.6	16	79	13	52	39	11	6	41	1.68
34461394--34461556	61	2.7	61	79	3	168	34	6	17	41	1.75
34466147--34466243	40	2.4	41	79	6	101	22	27	27	21	1.99
34466355--34466402	11	4.4	11	82	17	55	22	35	0	41	1.54
34466405--34466463	30	2.1	29	84	9	77	38	3	3	54	1.34
34468203--34468245	18	2.4	18	88	0	59	18	27	9	44	1.80
34471872--34472160	126	2.3	126	84	1	400	28	20	17	32	1.96
34472360--34472424	28	2.3	27	84	7	85	50	38	0	10	1.37
34473856--34473880	13	1.9	13	100	0	50	32	4	24	40	1.73
34475529--34475637	41	2.7	41	81	2	112	29	18	23	28	1.98
34480397--34480430	8	4.2	8	88	0	50	70	0	2	26	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34488420--34488446	6	4.5	6	100	0	54	33	14	51	0	1.43
34509322--34509386	32	2.1	32	97	2	123	30	9	12	47	1.72
34517178--34517316	21	6.5	21	72	3	98	15	20	17	46	1.84
34517160--34517316	42	3.7	42	81	3	161	15	21	16	46	1.84
34519769--34519836	26	2.7	26	79	2	75	36	19	26	17	1.94
34520318--34520347	5	6.0	5	92	0	51	43	20	0	36	1.52
34520834--34520860	13	2.1	13	100	0	54	22	14	0	62	1.31
34523683--34523712	6	5.0	6	95	0	51	50	13	0	36	1.42
34534241--34534270	13	2.3	13	94	0	51	33	3	13	50	1.58
34534365--34534605	50	4.8	50	86	2	322	26	23	30	19	1.98
34535151--34535187	12	3.2	12	77	14	51	43	0	16	40	1.48
34544731--34544989	30	8.6	30	85	5	272	43	15	7	33	1.74
34544746--34544966	60	3.7	60	88	1	307	42	15	7	34	1.75
34544746--34544966	90	2.4	90	89	1	325	42	15	7	34	1.75
34546923--34547001	41	1.9	41	97	0	149	31	6	13	48	1.68
34550692--34550732	19	2.2	19	95	0	73	39	4	14	41	1.67
34550770--34550850	41	2.0	41	92	0	135	28	8	14	48	1.74
34553459--34553494	18	2.0	18	94	0	63	38	30	16	13	1.88
34556277--34556319	10	4.1	10	80	11	50	27	0	0	72	0.85
34560773--34560949	69	2.6	69	78	5	171	38	16	19	25	1.92
34563999--34564028	13	2.3	13	94	0	51	33	3	13	50	1.58
34564123--34564265	50	2.8	50	81	3	162	25	23	30	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34566545--34566577	16	2.1	16	94	0	57	36	3	36	24	1.71
34566751--34567086	120	2.8	120	94	1	593	49	5	0	44	1.29
34571684--34571735	21	2.6	21	90	6	81	38	15	11	34	1.83
34573575--34573625	13	4.0	13	80	9	52	45	0	1	52	1.12
34573645--34573674	15	1.9	16	93	6	53	56	3	0	40	1.16
34573759--34573811	23	2.3	23	87	6	72	45	0	7	47	1.31
34579678--34579717	19	2.3	18	87	12	57	25	7	32	35	1.84
34583179--34583404	25	9.1	25	69	13	94	33	19	26	20	1.97
34583235--34583318	24	3.5	24	80	4	80	32	19	29	19	1.96
34583335--34583397	26	2.4	26	87	7	92	34	20	25	19	1.96
34590940--34591018	24	3.3	24	73	7	63	36	18	26	17	1.94
34590940--34591030	24	3.8	24	74	8	62	35	18	26	19	1.95
34591052--34591119	26	2.6	26	81	6	84	33	19	25	22	1.97
34591191--34591249	25	2.4	25	91	0	91	37	23	27	11	1.90
34591552--34591591	5	8.0	5	88	0	62	37	22	0	40	1.54
34591544--34591591	25	1.9	25	95	0	87	35	22	0	41	1.54
34596526--34596594	31	2.3	30	80	5	93	33	10	17	39	1.83
34598040--34598067	14	2.0	14	100	0	56	28	7	21	42	1.79
34598154--34598467	27	11.6	27	83	2	326	39	9	21	30	1.84
34598218--34598521	27	11.3	27	76	14	175	38	10	21	29	1.87
34600425--34600646	41	5.4	41	85	1	293	19	29	16	33	1.94
34600425--34600646	123	1.8	123	88	3	340	19	29	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34605453--34605521	36	1.9	36	87	0	102	53	7	0	39	1.29
34605453--34605513	18	3.4	18	77	8	70	52	8	0	39	1.31
34605455--34605532	36	2.2	36	83	4	95	52	7	0	39	1.30
34609350--34609375	13	2.0	13	100	0	52	0	7	0	92	0.39
34616579--34616651	28	2.6	29	80	12	80	30	5	1	63	1.26
34619191--34619262	36	2.0	36	97	0	135	43	13	18	25	1.86
34622300--34622330	14	2.2	14	94	0	53	0	38	0	61	0.96
34622297--34622355	11	5.4	11	76	8	57	3	35	0	61	1.13
34622297--34622352	22	2.5	22	80	5	69	3	35	0	60	1.14
34626084--34626109	2	13.0	2	100	0	52	50	0	0	50	1.00
34628148--34628350	87	2.3	87	85	1	264	34	14	22	28	1.94
34631627--34631759	53	2.5	53	86	1	178	35	12	23	29	1.91
34631883--34632045	61	2.7	61	89	0	245	34	15	21	28	1.94
34645691--34645814	50	2.4	52	77	6	137	38	12	15	33	1.84
34650197--34650394	63	3.1	62	81	7	204	26	24	24	24	2.00
34654480--34654510	16	1.9	16	93	0	53	32	22	3	41	1.70
34656770--34656905	40	3.4	39	72	8	105	36	20	23	19	1.95
34656928--34657357	207	2.1	207	97	0	810	18	19	30	30	1.96
34656928--34657370	41	10.8	41	83	2	530	19	19	30	30	1.97
34657755--34657794	15	2.7	15	92	3	64	27	0	35	37	1.57
34657750--34657801	14	3.6	14	82	5	59	28	0	34	36	1.58
34658345--34658371	11	2.5	11	100	0	54	7	14	14	62	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34661548--34661746	43	4.7	42	85	4	258	26	18	29	26	1.98
34661548--34661746	85	2.3	86	88	3	287	26	18	29	26	1.98
34663171--34663197	14	1.9	14	100	0	54	37	0	18	44	1.50
34663186--34663231	23	2.1	23	88	8	69	36	0	6	56	1.25
34663540--34663586	23	2.0	23	84	12	60	42	2	2	53	1.25
34667350--34667387	6	6.3	6	87	0	58	21	0	42	36	1.53
34667455--34667729	95	2.9	96	80	8	319	37	3	17	41	1.66
34667766--34668051	126	2.3	126	93	0	475	31	21	20	26	1.98
34671047--34671075	11	2.6	11	100	0	58	34	0	37	27	1.57
34673500--34673563	31	2.1	31	85	5	85	45	14	6	34	1.70
34677188--34677228	18	2.3	18	83	8	57	14	46	26	12	1.80
34692376--34692406	9	3.4	9	90	0	53	25	12	22	38	1.90
34692697--34692756	30	2.0	31	83	3	77	20	40	1	38	1.62
34693377--34693423	5	9.2	5	80	13	51	23	25	14	36	1.93
34701841--34701931	45	2.0	45	91	0	146	30	14	14	40	1.85
34702592--34702655	31	2.1	31	85	5	85	26	6	4	62	1.39
34707007--34707086	28	2.9	28	100	0	160	25	18	23	32	1.97
34713200--34713262	21	3.0	21	73	0	63	17	20	19	42	1.89
34725649--34725698	25	2.0	25	100	0	100	24	8	28	40	1.83
34727816--34727860	10	4.3	10	83	10	54	57	6	0	35	1.25
34731829--34732038	75	2.8	75	89	3	318	31	26	20	21	1.98
34731940--34732172	104	2.3	102	88	3	351	32	27	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34732115--34732167	27	2.0	27	96	0	97	30	32	20	16	1.95
34733231--34733264	11	2.8	12	91	8	52	35	8	11	44	1.72
34738954--34739006	27	2.0	27	96	0	97	28	30	22	18	1.98
34738881--34739108	104	2.2	102	92	1	375	29	27	21	21	1.98
34739027--34739113	27	3.0	27	85	11	102	28	31	22	17	1.97
34748186--34748630	210	2.1	208	79	4	471	26	17	23	32	1.96
34748186--34748634	70	6.4	69	82	2	409	26	17	22	32	1.96
34748188--34748634	140	3.2	139	80	3	495	26	17	22	32	1.96
34761322--34761356	18	1.9	18	94	0	61	54	5	11	28	1.59
34762537--34762789	70	3.6	70	83	0	317	25	22	22	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170