genome.fa.s16.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  53  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15495876--15495951	31	2.5	31	82	0	98	23	22	15	38	1.93
15497182--15497225	20	2.2	20	92	4	72	68	0	2	29	1.02
15498768--15498820	25	2.1	25	100	0	106	33	7	15	43	1.74
15501358--15501397	5	7.6	5	83	10	53	17	5	0	77	0.94
15502678--15502901	90	2.5	90	87	1	324	33	12	27	26	1.92
15502678--15502901	30	7.5	30	88	3	281	33	12	27	26	1.92
15509691--15509732	17	2.4	17	88	11	59	64	7	16	11	1.48
15525217--15525278	31	2.0	31	100	0	124	32	9	16	41	1.80
15525808--15525866	12	4.7	12	75	10	55	74	16	8	0	1.05
15525788--15525867	39	2.1	38	90	4	126	76	12	10	1	1.08
15530118--15530210	31	3.0	31	95	0	168	33	9	16	40	1.81
15536103--15536146	22	2.0	22	86	4	61	13	6	0	79	0.92
15537841--15537870	8	3.8	8	95	0	51	13	0	6	80	0.91
15542383--15542494	24	4.6	24	78	9	93	23	23	25	28	1.99
15542376--15542519	25	5.8	24	74	15	91	23	22	24	29	1.99
15557919--15557993	23	3.4	21	77	16	80	16	17	18	48	1.82
15563517--15563604	40	2.2	41	87	2	124	40	20	7	30	1.81
15563517--15563584	21	3.3	21	68	15	61	38	20	8	32	1.84
15563829--15563878	25	2.0	25	84	11	66	36	22	0	42	1.54
15565883--15566007	60	2.1	60	98	1	243	23	24	4	47	1.71
15576081--15576230	42	3.6	41	74	3	138	42	16	23	18	1.88
15588532--15588612	27	3.0	27	83	7	101	30	13	24	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15593138--15593178	22	1.9	21	85	5	55	21	17	39	21	1.93
15597348--15597394	24	2.0	24	83	8	60	61	6	0	31	1.21
15600733--15600761	14	2.1	14	100	0	58	55	13	0	31	1.39
15613315--15613342	14	2.0	14	100	0	56	35	7	0	57	1.26
15615984--15616033	20	2.6	19	80	20	59	20	28	2	50	1.59
15615991--15616033	21	2.2	20	87	8	61	18	30	2	48	1.60
15625429--15625460	16	2.0	16	100	0	64	43	25	0	31	1.55
15630895--15631010	61	1.9	58	82	5	142	49	5	4	41	1.45
15631361--15631403	20	2.2	19	83	4	50	6	16	27	48	1.71
15637389--15637633	27	9.1	27	79	5	235	42	20	15	21	1.89
15637752--15637828	26	3.0	26	90	0	127	20	20	22	36	1.95
15637921--15637997	33	2.3	33	84	2	91	23	23	24	28	1.99
15641581--15641637	28	2.0	29	82	3	71	45	21	1	31	1.62
15652701--15652758	7	8.0	7	81	16	66	15	13	0	70	1.17
15652701--15652753	21	2.5	21	93	3	88	15	15	0	69	1.19
15653602--15653645	22	2.1	22	87	8	65	2	20	0	77	0.88
15653607--15653674	7	9.3	7	74	15	57	2	20	1	75	1.02
15653665--15653698	6	5.7	6	96	0	59	11	2	14	70	1.27
15657169--15657235	34	2.0	34	100	0	134	26	26	20	25	1.99
15658548--15658584	19	1.9	19	88	0	56	16	8	32	43	1.77
15675570--15675690	46	2.6	47	81	11	128	34	8	0	56	1.35
15675540--15675701	69	2.3	69	80	9	195	33	7	3	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15675545--15675768	23	9.7	23	69	18	110	34	7	3	54	1.46
15675830--15675865	2	18.0	2	100	0	72	50	0	0	50	1.00
15675886--15675914	14	2.1	14	100	0	58	37	27	0	34	1.57
15677369--15677419	20	2.5	20	100	0	102	29	3	17	49	1.65
15682526--15697613	308	49.0	308	99	0	30108	37	14	16	31	1.89
15698867--15698907	3	13.7	3	100	0	82	31	0	0	68	0.90
15699132--15699164	16	2.1	16	94	0	57	39	6	33	21	1.78
15699375--15699419	18	2.6	18	86	10	58	51	0	0	48	1.00
15699360--15699428	15	4.7	15	72	16	56	50	1	0	47	1.09
15699507--15699548	15	2.9	15	82	10	52	52	0	0	47	1.00
15699387--15699791	120	3.4	120	94	1	690	49	5	2	42	1.38
15699638--15699672	18	2.0	17	88	5	52	54	0	0	45	0.99
15699798--15700011	88	2.4	90	86	4	290	46	4	3	45	1.40
15699773--15700011	47	5.3	46	70	15	149	46	3	3	45	1.39
15699832--15699980	44	3.4	43	69	16	108	48	3	2	45	1.30
15703007--15703072	33	2.0	33	100	0	132	36	6	15	42	1.71
15703287--15703373	37	2.4	37	94	0	147	35	8	14	41	1.76
15704471--15704540	35	2.0	35	97	0	131	34	22	7	35	1.82
15704530--15704591	22	2.7	23	87	12	101	54	22	6	16	1.64
15704530--15704603	22	3.3	23	83	11	91	56	21	5	16	1.59
15704506--15704794	107	2.7	107	91	0	463	44	24	6	23	1.76
15705440--15705466	5	5.4	5	100	0	54	40	18	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15719496--15719546	24	2.1	24	100	0	102	33	11	7	47	1.69
15721509--15721547	12	3.2	12	96	0	69	7	28	41	23	1.82
15722684--15722906	30	7.5	30	73	12	113	21	24	13	39	1.90
15722892--15722961	29	2.4	29	90	0	113	25	30	10	34	1.89
15723222--15723254	17	1.9	17	88	11	50	42	3	12	42	1.57
15725642--15725672	13	2.4	13	100	0	62	54	0	12	32	1.38
15749922--15749999	31	2.6	30	81	4	86	20	17	8	52	1.71
15749922--15750018	31	3.2	31	79	5	83	24	15	9	50	1.73
15761663--15761858	43	4.6	43	80	5	198	22	17	17	41	1.90
15761676--15761837	86	1.9	86	87	2	236	23	16	18	41	1.89
15761663--15761858	86	2.3	86	81	3	234	22	17	17	41	1.90
15768188--15768524	72	4.7	71	88	2	462	24	6	15	54	1.64
15770215--15770265	21	2.5	21	76	20	54	49	1	1	47	1.24
15770515--15770571	27	2.1	27	83	0	69	35	24	5	35	1.78
15770526--15770579	13	4.1	13	75	13	56	35	27	7	29	1.84
15779562--15779652	42	2.2	42	80	4	94	18	29	25	26	1.98
15781829--15781894	26	2.5	27	80	14	75	22	0	7	69	1.13
15781826--15781894	37	1.9	34	83	13	86	21	0	7	71	1.10
15782022--15782059	18	2.1	19	90	5	60	44	13	0	42	1.43
15782307--15782341	15	2.3	15	95	0	61	25	2	8	62	1.38
15785664--15785696	13	2.4	14	90	5	50	21	6	0	72	1.05
15788675--15788751	19	3.8	19	83	11	100	36	6	16	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15788717--15788761	23	2.0	23	86	4	65	33	4	15	46	1.66
15794227--15794444	44	5.0	44	79	5	235	27	16	26	30	1.96
15794225--15794444	88	2.5	88	82	5	266	27	15	26	30	1.96
15794439--15795458	132	7.8	132	94	1	1724	31	19	23	24	1.98
15795966--15796028	19	3.4	18	91	4	74	38	7	19	34	1.81
15795968--15796021	19	2.8	19	97	0	99	37	9	16	37	1.81
15795981--15796044	19	3.0	22	86	8	80	37	6	17	39	1.75
15796010--15796054	23	2.0	23	86	4	65	33	4	15	46	1.66
15800015--15800053	14	2.8	14	84	0	51	35	12	23	28	1.91
15800625--15800660	18	1.9	18	88	5	54	58	2	0	38	1.13
15800635--15800700	30	2.2	31	86	13	93	54	0	0	45	0.99
15800938--15800985	22	2.4	19	80	19	53	18	22	14	43	1.87
15802012--15802053	19	2.2	20	86	4	59	64	0	2	33	1.07
15804771--15804919	50	2.9	51	77	7	169	30	25	15	28	1.96
15809953--15809996	18	2.5	18	88	3	63	29	0	36	34	1.58
15809965--15810002	18	2.1	18	95	0	67	31	0	36	31	1.58
15810389--15810426	20	1.9	20	94	0	67	18	10	2	68	1.30
15810390--15810429	10	4.0	10	84	12	55	17	10	2	70	1.27
15814134--15814241	37	2.9	37	94	0	180	27	30	19	22	1.98
15814360--15815383	47	21.6	47	91	2	1622	28	28	9	33	1.88
15814529--15814603	22	3.3	22	63	7	60	29	29	10	30	1.91
15821565--15821775	109	1.9	110	86	2	300	31	17	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15826970--15827012	20	2.0	21	86	13	61	39	0	0	60	0.97
15828954--15828996	20	2.2	19	80	15	52	55	0	4	39	1.20
15830023--15830053	7	4.4	7	100	0	62	83	0	16	0	0.64
15837553--15837615	31	2.0	31	100	0	126	46	12	12	28	1.79
15844796--15844834	15	2.6	15	83	0	51	76	5	0	17	0.96
15846765--15846803	18	2.2	18	85	0	51	28	17	17	35	1.94
15851083--15851334	27	9.3	26	83	4	243	19	15	20	44	1.87
15851083--15851334	54	4.7	52	80	11	276	19	15	20	44	1.87
15851093--15851333	81	3.0	80	85	2	331	19	16	19	44	1.86
15853599--15853640	21	2.0	21	86	9	59	23	4	7	64	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170