genome.fa.s16.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  141  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42559146--42559187	18	2.3	18	92	8	68	23	11	14	50	1.76
42571356--42571457	32	3.2	32	98	1	197	40	19	14	25	1.90
42574515--42574622	38	2.8	38	91	0	171	31	10	21	37	1.87
42577655--42577768	40	3.0	36	74	18	124	52	1	3	42	1.28
42577714--42577746	17	2.0	17	88	5	50	51	0	3	45	1.16
42579790--42579821	14	2.2	15	94	5	57	62	0	0	37	0.95
42580142--42580184	21	2.0	22	90	4	70	13	4	13	67	1.38
42596631--42596845	88	2.4	87	80	5	236	35	17	8	37	1.81
42597298--42597323	13	2.0	13	100	0	52	38	0	23	38	1.55
42597417--42597487	24	3.2	22	84	9	99	33	4	1	60	1.25
42597890--42597952	26	2.4	25	75	12	65	36	3	20	39	1.69
42604643--42604691	20	2.3	21	83	16	66	65	0	2	32	1.04
42604979--42605013	2	17.5	2	100	0	70	0	51	0	48	1.00
42605068--42623127	415	43.8	415	86	3	24101	30	16	16	36	1.91
42626868--42626913	18	2.6	18	78	0	56	45	15	17	21	1.85
42628006--42628217	51	4.3	51	87	8	312	30	23	13	32	1.93
42628069--42628224	44	3.4	44	90	6	213	32	23	14	30	1.94
42628006--42628222	95	2.2	95	87	5	308	30	23	13	32	1.93
42628598--42628627	13	2.3	13	100	0	60	46	10	0	43	1.37
42630929--42631063	54	2.5	54	82	0	171	18	37	22	22	1.95
42632093--42632224	43	3.1	43	82	5	160	32	25	14	28	1.94
42634179--42634222	11	4.1	11	76	5	54	22	6	13	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42634185--42634225	21	2.0	21	90	0	64	29	4	9	56	1.53
42638279--42638514	107	2.2	108	83	3	289	39	14	17	28	1.89
42638730--42638929	107	1.8	109	83	7	264	35	17	18	29	1.93
42639225--42639477	103	2.4	105	80	10	273	37	19	18	24	1.93
42639616--42639869	102	2.4	104	87	7	352	27	20	17	34	1.95
42643257--42643300	21	2.1	21	86	0	61	56	2	4	36	1.32
42643265--42643309	12	4.0	12	75	16	51	53	0	4	42	1.21
42647465--42647518	21	2.4	23	80	17	60	50	1	1	46	1.23
42650582--42650630	22	2.2	22	82	7	55	67	10	0	22	1.20
42651781--42651825	22	2.0	22	82	8	54	22	11	46	20	1.81
42652618--42652731	44	2.6	42	81	5	111	29	21	15	32	1.95
42652704--42653398	44	15.6	44	70	14	164	28	22	18	31	1.97
42652484--42653397	312	2.9	311	90	1	1431	28	21	18	31	1.97
42652981--42653630	268	2.4	268	87	3	810	29	21	18	30	1.97
42659329--42659391	30	2.1	30	93	0	108	57	17	3	22	1.54
42660033--42660059	2	13.5	2	100	0	54	0	0	48	51	1.00
42663091--42663170	29	3.0	29	65	28	77	27	27	1	43	1.63
42663068--42663170	51	2.0	52	92	1	172	25	28	1	44	1.65
42663068--42663158	11	8.5	11	70	18	59	24	28	2	45	1.65
42664995--42665037	18	2.4	18	84	0	50	20	25	9	44	1.81
42668595--42668883	126	2.3	126	89	0	443	27	22	17	32	1.97
42670014--42670083	29	2.5	28	75	9	70	38	5	4	51	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42677401--42677446	18	2.8	18	84	15	64	0	30	41	28	1.56
42679219--42679261	13	3.1	14	84	12	54	60	0	0	39	0.97
42681741--42681831	3	30.0	3	84	2	56	53	2	10	32	1.48
42688424--42688474	13	3.9	13	75	10	59	45	19	17	17	1.86
42688432--42688485	26	2.1	26	100	0	108	44	22	18	14	1.86
42692554--42692578	4	6.2	4	100	0	50	76	0	0	24	0.80
42694717--42694987	137	2.0	137	99	0	533	42	14	18	24	1.88
42700359--42700432	36	2.0	37	97	2	141	39	5	0	55	1.23
42700470--42700537	25	2.7	24	77	11	66	50	1	2	45	1.26
42700465--42700521	30	1.9	29	86	10	80	49	1	1	47	1.22
42700720--42700754	19	1.9	17	88	11	52	40	0	14	45	1.45
42702249--42702311	19	3.1	21	82	11	60	63	1	0	34	1.04
42702271--42702321	19	2.7	19	96	0	93	58	0	0	41	0.98
42702259--42702340	19	4.2	18	84	12	85	57	1	0	41	1.06
42702271--42702377	19	5.8	18	76	8	74	56	0	0	42	1.12
42703877--42703906	16	1.9	16	93	6	53	40	0	6	53	1.27
42704656--42704700	3	15.0	3	100	0	90	66	0	33	0	0.92
42705238--42705267	9	3.3	9	90	0	51	13	0	26	60	1.34
42707143--42707192	24	2.1	24	85	10	68	24	14	10	52	1.71
42711608--42711643	19	1.9	19	88	5	56	58	8	0	33	1.28
42712219--42712265	24	1.9	25	82	4	60	46	2	0	51	1.13
42712578--42712646	32	2.2	32	84	5	88	44	5	20	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42716566--42716614	25	2.0	25	84	15	66	36	0	22	40	1.54
42716584--42716636	28	1.9	27	88	3	79	37	0	20	41	1.53
42716749--42716790	14	3.0	14	82	0	57	52	4	11	30	1.59
42716821--42717148	127	2.6	126	85	4	462	38	14	18	28	1.91
42717236--42717297	25	2.5	25	91	0	106	53	3	24	19	1.60
42720417--42720468	26	2.0	26	92	0	86	28	34	21	15	1.94
42720429--42720579	72	2.1	71	91	2	241	30	29	16	23	1.96
42720592--42720642	26	2.0	26	96	0	93	29	35	23	11	1.90
42720498--42720720	103	2.2	104	92	2	369	31	31	18	18	1.95
42721049--42721112	30	2.2	29	81	10	76	29	28	6	35	1.82
42721056--42721112	30	1.9	30	85	3	80	29	24	7	38	1.82
42723015--42723145	61	2.2	60	87	6	187	53	7	5	33	1.52
42724119--42724158	20	2.0	21	90	5	64	70	17	0	12	1.18
42725437--42725473	19	1.9	19	94	0	65	37	10	8	43	1.69
42725468--42725516	18	2.5	21	81	18	61	46	10	6	36	1.63
42725453--42725528	17	4.2	17	73	16	55	43	11	9	35	1.73
42725440--42725556	39	3.1	37	79	8	112	43	11	10	34	1.76
42725468--42725556	22	4.6	18	74	20	63	43	11	10	34	1.74
42725597--42725640	20	2.0	23	87	12	67	31	9	11	47	1.71
42725618--42725725	18	6.3	18	75	10	93	41	9	13	35	1.77
42725826--42725878	16	3.3	16	79	10	63	73	3	1	20	1.08
42726218--42726261	20	2.3	19	85	14	63	0	15	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42726218--42726263	12	3.9	11	81	13	56	0	17	0	82	0.67
42726623--42726671	21	2.4	20	86	6	71	2	24	0	73	0.94
42726631--42726667	18	2.1	17	95	5	65	0	24	0	75	0.80
42726780--42726838	7	8.6	7	80	9	59	0	13	5	81	0.85
42726786--42726845	15	3.9	15	76	20	52	1	16	5	76	1.04
42726774--42726834	22	3.0	20	76	9	68	0	16	4	78	0.91
42727166--42727279	30	3.9	28	77	5	93	41	6	22	29	1.78
42727456--42728127	77	8.6	78	84	5	778	34	19	16	29	1.94
42727456--42728119	153	4.3	155	83	6	828	34	19	16	29	1.94
42727456--42728127	310	2.2	308	86	6	941	34	19	16	29	1.94
42736370--42736445	17	4.2	17	72	16	55	42	10	10	36	1.74
42736368--42736473	39	2.7	40	80	8	103	40	10	11	37	1.75
42736535--42736597	18	3.6	18	86	4	83	47	9	12	30	1.73
42737131--42737177	20	2.4	19	86	13	69	0	14	0	85	0.61
42737141--42737174	15	2.3	15	90	5	52	0	17	0	82	0.67
42737496--42737582	21	4.0	22	79	7	97	2	19	0	78	0.86
42737496--42737596	24	4.0	23	71	21	78	1	20	0	77	0.87
42737510--42737597	7	13.0	7	72	13	60	1	25	0	73	0.90
42737506--42737596	21	4.1	22	77	12	89	1	23	0	75	0.86
42738087--42738149	29	2.1	31	82	11	78	36	6	22	34	1.80
42750497--42750561	20	3.3	20	85	8	89	55	6	0	38	1.25
42752195--42752239	19	2.4	18	85	14	56	22	8	8	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42757837--42757923	45	2.0	44	88	2	129	51	2	2	43	1.26
42760274--42760298	8	3.1	8	100	0	50	36	0	0	64	0.94
42764598--42764630	4	8.2	4	100	0	66	75	0	0	24	0.80
42765076--42765168	3	31.0	3	69	4	53	54	5	3	36	1.39
42766128--42766153	11	2.4	11	100	0	52	7	26	7	57	1.54
42768394--42768458	29	2.2	30	97	2	123	40	18	0	41	1.51
42768696--42768720	5	5.0	5	100	0	50	80	20	0	0	0.72
42772224--42772276	21	2.5	21	93	0	88	30	37	9	22	1.86
42781534--42781616	36	2.3	37	85	4	123	50	3	6	39	1.44
42784878--42784906	5	5.8	5	100	0	58	82	0	0	17	0.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170