genome.fa.s16.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  165  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48980170--48980286	35	3.4	33	82	9	128	47	12	10	29	1.75
48980175--48980296	53	2.3	53	79	6	133	46	12	11	29	1.76
48980169--48980333	18	9.4	18	76	13	123	43	10	11	34	1.76
48980666--48980717	27	2.0	27	84	3	70	59	7	5	26	1.48
48980824--48980869	5	9.8	5	81	13	62	0	15	0	84	0.62
48980824--48980869	9	4.9	9	89	5	65	0	15	0	84	0.62
48980823--48980880	23	2.5	23	86	5	73	0	17	0	82	0.66
48981133--48981174	10	4.1	10	84	9	50	0	26	0	73	0.83
48981134--48981183	13	4.1	12	78	17	50	0	26	0	74	0.83
48981130--48981168	20	2.0	20	90	10	62	0	23	0	76	0.78
48981144--48981188	13	3.5	13	85	14	67	0	26	0	73	0.84
48981243--48981281	17	2.3	17	86	0	51	0	46	0	53	1.00
48981295--48981367	28	2.7	27	76	14	71	1	16	6	75	1.09
48981922--48982763	77	10.9	77	83	7	985	36	20	16	26	1.94
48981937--48982761	156	5.3	155	86	5	1023	36	20	16	26	1.93
48981922--48982763	229	3.6	226	83	7	1007	36	20	16	26	1.94
48985248--48985336	44	2.0	44	95	0	160	30	23	8	37	1.86
48987204--48987276	36	2.0	36	100	0	146	43	10	13	31	1.79
48991028--48991226	17	11.4	16	78	15	123	42	11	13	33	1.80
48990996--48991226	35	6.6	34	80	11	211	42	10	12	33	1.78
48992030--48992072	7	5.9	7	81	10	50	0	25	0	74	0.82
48992031--48992067	14	2.7	14	91	4	58	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48992018--48992081	24	2.7	22	81	13	74	0	26	0	73	0.84
48992218--48992259	14	3.1	13	81	18	50	0	14	4	80	0.86
48992194--48992259	27	2.4	29	78	16	77	1	18	3	77	0.98
48992572--48992659	30	2.9	30	86	1	113	36	4	23	35	1.76
49004495--49004624	27	4.8	27	86	3	147	21	19	34	24	1.96
49004686--49004732	18	2.5	20	79	10	62	63	2	34	0	1.06
49004682--49004735	22	2.4	23	84	12	76	64	1	33	0	1.04
49008058--49008113	6	9.3	6	78	7	60	3	32	33	30	1.75
49009817--49009898	38	2.2	38	95	0	146	40	2	3	53	1.32
49010047--49010384	27	14.1	27	68	26	192	52	12	1	33	1.47
49010041--49010393	49	7.5	49	78	15	184	53	12	1	32	1.46
49010039--49010255	115	1.9	115	97	0	407	52	12	1	32	1.48
49010042--49010384	96	3.6	95	81	13	345	53	12	1	32	1.46
49010291--49010518	21	10.7	21	69	19	116	55	12	0	32	1.40
49010280--49010519	83	2.8	84	73	16	235	54	12	0	32	1.41
49010550--49010574	7	3.6	7	100	0	50	60	0	0	40	0.97
49010334--49010563	122	1.9	122	84	9	308	54	12	0	33	1.41
49014565--49014625	13	4.7	13	85	4	70	37	22	8	31	1.84
49023169--49023206	20	2.0	20	89	5	60	47	10	0	42	1.38
49030964--49031012	22	2.2	22	85	0	62	57	6	0	36	1.24
49036838--49036895	20	2.9	20	77	10	73	29	24	13	32	1.94
49042281--49042327	24	2.0	24	82	0	58	38	25	12	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49044801--49044956	83	1.9	83	79	2	179	30	7	16	44	1.76
49045991--49046047	24	2.3	25	80	14	82	45	5	17	31	1.71
49058143--49058178	17	2.1	18	89	5	56	41	2	2	52	1.30
49060612--49060658	21	2.2	21	77	7	51	48	21	2	27	1.61
49064050--49064277	114	2.0	114	100	0	456	40	16	16	26	1.90
49068270--49068307	18	2.1	18	85	9	51	13	15	47	23	1.81
49082069--49082108	20	2.0	21	85	5	55	45	15	10	30	1.78
49089116--49089140	12	2.1	12	100	0	50	48	0	8	44	1.32
49102068--49102176	54	2.0	54	98	0	209	33	12	6	47	1.67
49105573--49105605	17	1.9	17	88	11	50	66	12	15	6	1.42
49113767--49114168	199	2.0	200	94	0	707	30	16	26	27	1.97
49118758--49118824	31	2.2	31	86	2	91	47	1	2	47	1.26
49120325--49120383	11	5.4	11	79	0	55	66	13	6	13	1.44
49122584--49122642	26	2.3	26	79	5	66	47	0	5	47	1.24
49125413--49125455	6	6.8	6	81	7	50	44	16	20	18	1.87
49125424--49125571	45	3.2	49	82	14	147	41	20	18	19	1.91
49125439--49125571	45	3.0	45	89	6	200	41	21	18	19	1.91
49129157--49129188	13	2.5	13	100	0	64	9	37	0	53	1.34
49131940--49133185	210	5.9	210	84	3	1619	31	16	18	33	1.93
49133196--49133687	144	3.4	144	81	1	610	25	20	21	32	1.98
49143302--49143381	25	2.9	27	80	12	101	43	7	22	26	1.79
49147963--49148038	25	3.0	25	92	0	125	48	6	19	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49150944--49150981	17	2.4	16	86	8	51	28	10	10	50	1.70
49152304--49152329	11	2.4	11	100	0	52	61	0	0	38	0.96
49153290--49153345	21	2.7	21	81	16	55	41	0	1	57	1.09
49153296--49153349	22	2.3	24	75	21	60	40	0	1	57	1.09
49154582--49154640	31	1.9	31	92	0	100	45	8	8	37	1.65
49156935--49157119	46	4.0	46	85	2	255	38	9	23	29	1.85
49157817--49157869	21	2.6	19	73	23	54	33	1	3	60	1.26
49158319--49158347	6	4.8	6	100	0	58	17	34	17	31	1.93
49159128--49159186	9	6.6	9	84	7	66	64	0	1	33	1.04
49159128--49159186	18	3.3	18	79	9	75	64	0	1	33	1.04
49159968--49159996	6	4.8	6	100	0	58	65	0	0	34	0.93
49160143--49160259	56	2.1	57	85	1	155	52	13	11	23	1.72
49161557--49161617	31	2.0	31	93	0	104	45	8	11	34	1.70
49166582--49167142	279	2.0	279	96	1	1027	28	19	20	32	1.97
49166896--49167745	210	4.0	212	91	1	1306	29	18	18	33	1.95
49170234--49170316	42	2.0	42	100	0	166	31	6	24	38	1.79
49170802--49172266	210	7.0	210	95	1	2668	28	18	19	33	1.95
49170802--49172266	631	2.3	630	95	1	2677	28	18	19	33	1.95
49177373--49177427	29	2.0	27	89	7	83	29	0	7	63	1.21
49184077--49184108	6	5.3	6	100	0	64	34	34	15	15	1.90
49201608--49201741	65	2.1	65	97	0	250	35	8	19	37	1.82
49224332--49224394	33	1.9	33	81	12	76	58	0	3	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49224340--49224414	33	2.3	32	80	8	82	60	1	1	37	1.14
49233727--49233753	7	3.9	7	100	0	54	74	0	0	25	0.83
49233944--49233995	4	13.0	4	85	0	59	67	1	7	23	1.27
49239052--49239436	188	2.0	189	88	2	569	32	10	14	42	1.80
49242700--49242744	20	2.2	21	85	14	60	64	4	0	31	1.13
49256315--49256433	59	2.0	59	93	0	202	39	10	10	39	1.74
49259020--49259086	23	2.9	24	75	4	75	58	2	1	37	1.23
49259016--49259088	13	6.1	13	65	18	50	58	2	1	36	1.21
49262005--49262127	56	2.2	54	79	12	142	30	3	5	60	1.35
49265960--49266046	42	2.1	42	100	0	174	28	4	24	42	1.74
49271112--49271145	17	2.0	17	94	0	59	44	50	0	5	1.26
49275750--49275783	17	2.0	17	94	0	59	44	50	0	5	1.26
49278752--49278794	18	2.3	18	80	4	50	62	2	0	34	1.08
49278781--49278835	25	2.2	24	83	9	65	54	3	1	40	1.28
49279198--49279241	18	2.4	18	82	10	54	52	2	0	45	1.13
49279743--49279817	32	2.3	32	100	0	150	28	5	8	58	1.48
49285192--49285266	31	2.5	29	83	10	89	48	13	5	33	1.65
49294522--49294567	18	2.6	18	86	6	58	43	0	2	54	1.12
49294516--49294675	31	5.3	30	64	22	84	42	0	4	52	1.26
49294584--49294635	22	2.4	21	79	17	54	38	0	5	55	1.24
49294417--49294709	122	2.4	122	95	1	518	42	0	4	52	1.25
49294846--49294942	45	2.2	45	85	5	126	34	27	5	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49294922--49294954	16	2.1	16	100	0	66	21	36	6	36	1.78
49295330--49295739	78	5.3	78	74	6	233	29	19	21	30	1.97
49299018--49299068	15	3.5	15	84	10	70	52	0	11	35	1.38
49300423--49300489	35	1.9	35	100	0	134	19	11	50	17	1.77
49307111--49307215	54	1.9	54	90	0	165	22	24	22	29	1.99
49315333--49315509	55	3.2	55	90	1	266	50	18	7	23	1.72
49315499--49315622	55	2.3	55	87	2	169	49	16	8	25	1.75
49315410--49315598	89	2.1	89	90	1	290	49	18	8	23	1.75
49315355--49315622	144	1.9	144	86	1	385	50	18	8	23	1.74
49316496--49316525	5	6.0	5	100	0	60	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170