genome.fa.s16.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  169  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50418087--50418216	26	4.9	28	71	15	80	50	3	6	39	1.45
50418087--50418189	28	3.9	25	73	16	75	49	2	6	40	1.44
50418202--50418312	58	1.9	59	88	5	172	47	4	11	36	1.60
50418397--50418448	22	2.4	22	78	9	54	51	3	7	36	1.49
50419987--50420031	23	1.9	24	86	4	65	6	17	11	64	1.46
50434653--50434695	12	3.6	12	77	22	54	30	13	23	32	1.93
50434652--50434707	24	2.3	24	100	0	112	30	17	21	30	1.96
50434665--50434707	12	3.6	12	77	22	54	30	18	20	30	1.97
50441652--50441691	20	2.0	20	90	0	62	40	12	2	45	1.56
50444583--50444619	12	3.1	12	88	0	56	10	45	16	27	1.80
50452086--50452172	42	2.1	42	100	0	174	27	29	13	28	1.94
50452909--50452964	28	2.0	28	86	6	78	17	41	5	35	1.73
50460661--50460703	19	2.2	19	87	8	59	39	2	0	58	1.11
50463816--50463860	18	2.5	18	96	0	81	13	6	17	62	1.52
50466776--50466825	23	2.2	23	100	0	100	30	0	12	58	1.34
50468664--50468744	39	2.1	39	97	0	153	41	13	4	39	1.66
50469176--50469207	16	2.1	16	94	5	57	37	0	0	62	0.95
50471035--50471060	6	4.3	6	100	0	52	38	0	0	61	0.96
50471128--50471178	22	2.3	22	80	6	59	39	0	1	58	1.09
50476603--50476628	3	8.7	3	100	0	52	34	34	0	30	1.58
50477729--50477766	16	2.4	16	90	0	58	47	5	7	39	1.55
50480147--50480221	29	2.6	29	81	8	98	38	18	13	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50481003--50481041	5	7.8	5	83	11	53	41	2	2	53	1.28
50481003--50481052	23	2.1	25	85	7	68	46	2	2	50	1.24
50491174--50491729	148	3.7	147	78	9	516	40	11	12	35	1.79
50496581--50496606	6	4.3	6	100	0	52	19	0	0	80	0.71
50503996--50504041	23	2.0	23	95	0	83	8	6	30	54	1.56
50507832--50507874	20	2.2	20	83	8	52	41	6	0	51	1.29
50512361--50512387	14	1.9	14	100	0	54	44	7	3	44	1.49
50525875--50525920	24	2.0	23	82	4	56	23	2	2	71	1.08
50525917--50525945	13	2.3	13	94	5	51	17	0	13	68	1.20
50532342--50532396	27	2.0	27	96	0	101	20	12	14	52	1.73
50536534--50536613	36	2.2	36	82	8	101	52	1	8	37	1.41
50536744--50536813	3	23.3	3	85	5	97	62	1	4	31	1.23
50537854--50537922	30	2.3	29	80	9	75	5	7	44	42	1.56
50538980--50539004	12	2.1	12	100	0	50	24	16	0	60	1.36
50549566--50549594	15	1.9	15	100	0	58	13	6	27	51	1.66
50555140--50555171	12	2.6	13	85	14	50	18	12	28	40	1.87
50555152--50555220	33	2.1	33	94	5	122	13	7	37	42	1.71
50561277--50561328	27	1.9	27	84	7	70	34	5	11	48	1.63
50564725--50564994	146	1.9	143	87	3	398	43	8	10	37	1.70
50566985--50567060	29	2.7	29	79	6	93	31	7	1	59	1.34
50568102--50568160	31	1.9	31	89	0	91	37	11	5	45	1.63
50576382--50576559	6	29.7	6	100	0	356	50	33	0	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50576542--50576668	56	2.3	56	95	1	229	48	19	9	22	1.78
50580976--50581016	21	2.0	21	90	0	64	19	29	21	29	1.98
50584638--50584695	6	9.7	6	98	0	107	18	0	31	50	1.48
50584680--50584974	145	2.0	145	91	0	473	29	11	22	36	1.90
50587528--50587560	17	2.0	17	88	5	50	15	3	3	78	0.99
50589826--50589884	28	2.1	28	87	3	82	23	13	8	54	1.66
50589835--50589890	28	2.0	28	82	0	67	28	16	5	50	1.67
50594617--50594678	24	2.6	24	82	5	72	29	56	8	6	1.53
50594698--50594776	30	2.6	30	86	7	108	18	53	6	21	1.67
50594757--50594786	12	2.5	12	88	0	51	23	63	0	13	1.29
50594823--50595728	135	6.7	135	92	1	1447	22	53	9	15	1.70
50595209--50595251	18	2.4	18	92	0	77	20	55	11	11	1.66
50594728--50595728	405	2.4	404	91	3	1608	21	53	9	15	1.70
50597637--50597674	20	2.0	20	89	5	60	57	2	0	39	1.12
50603310--50603364	26	2.1	26	86	6	76	49	7	0	43	1.30
50603948--50603975	3	9.3	3	100	0	56	32	67	0	0	0.91
50604071--50604145	18	4.2	18	71	6	53	21	52	4	22	1.64
50604164--50604537	123	3.0	117	84	7	408	22	51	9	16	1.74
50604306--50604513	42	5.1	40	69	20	128	21	52	8	16	1.70
50604488--50604547	18	3.2	18	76	17	50	25	50	8	16	1.73
50604508--50604547	21	1.9	21	94	0	71	30	45	10	15	1.78
50604053--50604688	123	5.1	123	75	12	397	23	51	8	17	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50604552--50604590	18	2.2	18	85	0	51	28	61	0	10	1.28
50604617--50604663	24	2.0	24	83	8	60	31	48	6	12	1.66
50614452--50614527	38	2.0	37	87	2	107	31	1	0	67	0.99
50614494--50614534	20	1.9	22	85	14	59	39	0	0	60	0.96
50619752--50619779	5	5.6	5	100	0	56	17	0	60	21	1.36
50629212--50629258	15	3.1	15	90	0	58	55	0	10	34	1.35
50629226--50629258	12	2.8	12	95	0	57	57	0	9	33	1.30
50630846--50630961	45	2.6	42	84	8	135	25	23	24	27	2.00
50630846--50631176	46	7.6	45	75	11	232	26	20	21	31	1.98
50643330--50643358	11	2.6	11	100	0	58	75	6	0	17	1.01
50643907--50643953	15	3.1	15	90	0	58	55	0	10	34	1.35
50643921--50643953	12	2.8	12	95	0	57	57	0	9	33	1.30
50645692--50645737	18	2.5	19	82	7	58	54	4	6	34	1.46
50651904--50651945	19	2.2	20	86	4	59	35	2	2	59	1.23
50665651--50665721	27	2.6	27	93	0	124	30	23	28	16	1.97
50665726--50666250	19	26.3	19	70	22	207	29	0	14	55	1.41
50665726--50666250	40	13.2	38	66	25	205	29	0	14	55	1.41
50665769--50666166	61	6.4	62	70	17	286	29	0	13	56	1.37
50665726--50666112	115	3.3	118	86	7	568	30	0	12	56	1.39
50665964--50666011	8	5.6	8	81	13	60	27	0	14	58	1.37
50665950--50666025	27	2.8	27	100	0	152	30	0	14	55	1.40
50665751--50666250	80	6.3	80	75	14	376	30	0	14	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50666244--50666362	60	2.0	60	88	3	177	32	1	13	52	1.51
50666483--50666519	16	2.4	16	90	4	58	32	2	5	59	1.34
50667875--50667925	25	2.1	24	85	3	66	72	3	11	11	1.25
50675709--50675870	81	2.0	81	83	4	202	47	20	10	21	1.80
50678866--50678918	19	2.8	20	88	8	83	62	1	0	35	1.06
50691541--50691582	21	2.0	21	85	0	57	59	2	0	38	1.10
50702464--50702508	6	7.5	6	100	0	90	33	0	15	51	1.44
50713948--50714009	32	2.0	32	84	6	83	54	8	6	30	1.55
50714472--50714509	18	2.3	16	80	20	51	34	0	5	60	1.19
50720823--50720851	13	2.1	14	93	6	51	0	10	0	89	0.48
50720823--50720851	7	4.3	7	91	8	51	0	10	0	89	0.48
50728710--50728756	24	2.0	24	83	8	60	36	0	4	59	1.17
50734027--50734082	29	1.9	29	85	7	78	35	14	8	41	1.77
50737165--50737431	95	2.9	93	89	2	412	21	14	15	48	1.80
50740163--50740210	15	3.4	14	81	13	55	54	4	0	41	1.20
50746798--50746838	11	3.7	11	80	0	55	19	14	9	56	1.66
50746875--50746937	30	2.1	30	87	0	90	28	3	12	55	1.52
50747207--50747238	6	5.3	6	100	0	64	0	15	0	84	0.63
50748102--50748130	9	3.0	10	90	10	51	41	0	0	58	0.98
50757370--50757408	16	2.4	17	86	4	53	38	0	2	58	1.12
50767488--50767524	2	19.0	2	94	5	67	0	48	0	51	1.00
50769586--50769644	31	1.9	31	82	0	73	28	18	15	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50785751--50785883	21	6.3	21	71	3	88	44	17	22	15	1.86
50785732--50785879	42	3.5	42	83	0	172	43	18	22	16	1.88
50785780--50785905	21	6.0	20	69	9	63	43	19	22	15	1.87
50788085--50788123	20	1.9	20	89	5	60	28	2	2	66	1.18
50795984--50796042	28	2.0	28	81	12	66	47	1	3	47	1.29
50803556--50803593	19	2.0	19	100	0	76	31	5	21	42	1.75
50828304--50828352	24	2.0	24	100	0	98	20	16	20	42	1.89
50839133--50839181	22	2.3	22	86	13	68	65	2	24	8	1.31
50845073--50845168	31	3.1	31	95	3	174	31	9	13	45	1.75
50846606--50846631	9	2.9	9	100	0	52	0	11	0	88	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170