genome.fa.s16.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  114  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35119402--35119498	13	7.4	13	77	2	86	42	2	17	38	1.61
35119389--35119448	26	2.3	26	85	2	75	45	1	18	35	1.60
35119402--35119513	53	2.1	53	83	3	136	42	1	17	37	1.60
35119402--35119498	26	3.7	25	79	5	95	42	2	17	38	1.61
35126912--35126954	22	2.0	22	95	0	77	9	20	27	41	1.83
35127212--35127472	43	6.0	43	77	4	265	30	29	17	22	1.96
35127200--35127465	86	3.1	86	87	2	354	29	30	17	22	1.97
35127220--35127472	130	2.0	129	84	7	334	30	29	16	22	1.96
35127220--35127514	43	6.9	42	75	6	205	31	28	16	23	1.96
35127243--35127514	86	3.2	86	83	3	244	32	28	16	22	1.95
35127817--35127891	21	3.6	21	87	0	105	5	42	17	34	1.72
35127879--35128025	66	2.2	66	85	4	190	13	29	17	40	1.87
35127918--35128048	66	2.0	66	87	3	192	13	25	19	41	1.88
35133553--35133663	9	13.2	9	74	14	103	32	1	18	47	1.59
35133553--35133663	25	4.4	25	87	0	159	32	1	18	47	1.59
35133577--35133659	16	5.1	16	76	13	80	31	2	18	48	1.61
35133553--35133663	50	2.2	50	91	0	177	32	1	18	47	1.59
35133712--35133774	12	5.2	12	72	1	54	28	3	17	50	1.61
35135277--35135314	14	2.7	14	100	0	76	15	5	57	21	1.57
35136778--35136830	22	2.4	22	80	0	61	30	47	1	20	1.61
35137100--35137180	7	11.7	7	75	12	62	35	41	1	20	1.61
35137269--35137299	15	2.1	15	100	0	62	45	29	0	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35137587--35137740	41	3.8	41	83	1	184	31	24	20	23	1.98
35137587--35137745	82	1.9	82	85	2	221	30	25	21	22	1.99
35137782--35137893	39	2.8	40	84	6	131	18	21	22	37	1.94
35140749--35140797	25	1.9	26	87	4	73	36	16	8	38	1.78
35150015--35150217	40	5.1	40	91	0	307	44	27	16	12	1.83
35151891--35151933	23	1.9	23	90	4	70	74	2	0	23	0.93
35159665--35160000	161	2.1	161	85	1	458	24	21	17	36	1.95
35162321--35162358	16	2.4	16	95	0	67	60	0	0	39	0.97
35162325--35162364	16	2.7	14	88	7	53	57	0	0	42	0.98
35164276--35164315	19	2.1	19	86	9	55	67	20	12	0	1.22
35167226--35167250	6	4.2	6	100	0	50	52	0	0	48	1.00
35168702--35169026	111	2.9	112	86	2	445	25	23	26	24	2.00
35168807--35169219	188	2.2	185	87	3	578	24	23	26	25	2.00
35168925--35169099	73	2.4	74	90	0	271	25	22	25	26	2.00
35168993--35169216	114	2.0	114	90	1	351	24	22	26	26	2.00
35169459--35169500	15	2.9	14	82	6	57	21	0	40	38	1.53
35169798--35169846	7	6.9	7	76	4	53	20	0	46	32	1.51
35169797--35169861	15	4.5	15	81	11	57	21	0	43	35	1.53
35170510--35170975	146	3.2	146	93	2	786	44	13	16	26	1.84
35174719--35174903	43	4.3	42	90	1	228	24	17	25	32	1.97
35174719--35174903	86	2.2	86	87	2	264	24	17	25	32	1.97
35182595--35182674	38	2.1	38	95	0	142	36	6	18	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35182517--35182766	130	1.9	130	95	0	455	34	7	16	42	1.76
35182553--35183192	276	2.3	275	83	5	854	34	7	16	42	1.75
35182633--35183159	92	5.7	92	91	0	847	33	7	16	42	1.76
35189347--35189855	31	16.6	31	71	10	285	34	7	15	43	1.74
35189316--35189898	92	6.3	92	91	0	923	34	7	15	43	1.74
35199098--35199170	32	2.5	27	78	19	92	26	2	19	52	1.59
35199111--35199171	32	1.9	32	96	0	113	27	3	18	50	1.62
35200420--35200458	20	2.0	20	94	0	69	48	0	2	48	1.15
35200579--35200616	14	2.7	15	88	8	53	42	15	2	39	1.61
35209379--35209493	50	2.2	52	78	4	135	37	13	13	35	1.84
35216599--35216787	51	3.8	48	78	13	186	26	15	25	32	1.95
35216795--35216886	45	2.0	45	95	0	166	25	17	25	32	1.97
35222099--35222292	101	1.9	101	88	5	293	24	17	27	30	1.97
35222098--35222281	51	3.6	51	81	5	230	24	16	27	31	1.97
35227751--35227999	124	2.0	124	99	0	489	36	21	16	25	1.94
35248804--35248838	16	2.2	16	89	0	52	17	5	0	77	0.96
35254496--35254808	44	7.1	44	63	7	141	28	26	23	22	1.99
35254350--35255023	88	7.7	88	88	1	938	29	27	22	20	1.99
35254350--35255046	263	2.6	261	85	3	889	28	27	22	20	1.99
35254350--35255047	351	2.0	351	86	0	842	28	27	22	20	1.99
35255003--35255244	131	1.8	131	85	3	344	26	22	24	26	2.00
35255632--35255733	44	2.3	44	83	3	125	29	22	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35257561--35257595	16	2.2	16	89	0	52	17	5	0	77	0.96
35257561--35257607	23	2.0	23	87	4	67	21	4	0	74	0.99
35257672--35257718	17	2.5	19	76	20	53	31	0	6	61	1.21
35258714--35258790	14	5.0	15	71	20	52	44	15	7	32	1.75
35258730--35258769	20	2.0	20	90	0	62	50	12	10	27	1.72
35258718--35258783	35	1.9	34	90	6	107	46	13	7	31	1.71
35268196--35268236	20	2.0	20	90	0	64	41	17	4	36	1.71
35268934--35268995	31	2.0	31	96	0	115	29	17	3	50	1.62
35272109--35272152	22	2.0	22	81	0	52	56	2	0	40	1.11
35275835--35275889	28	1.9	29	82	10	69	50	7	10	30	1.64
35280540--35280579	21	1.9	21	94	0	71	42	12	12	32	1.80
35281468--35281519	17	3.4	17	75	25	69	23	23	26	26	2.00
35282171--35282196	7	3.7	7	100	0	52	42	0	0	57	0.98
35283239--35283285	24	1.9	25	91	4	78	27	14	10	46	1.78
35284770--35285047	144	1.9	144	92	2	470	31	16	25	25	1.96
35294757--35294874	45	2.6	45	83	1	148	31	21	22	24	1.98
35295012--35295130	45	2.6	45	79	0	130	27	21	25	25	1.99
35310552--35310578	14	1.9	14	100	0	54	29	37	0	33	1.58
35310900--35310955	17	3.7	17	67	30	54	33	12	10	42	1.77
35310895--35310953	27	2.2	27	87	0	82	37	11	8	42	1.72
35310905--35310958	27	2.0	27	100	0	108	29	11	11	48	1.73
35313602--35313634	17	2.0	17	88	5	50	39	21	0	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35319279--35319325	25	2.0	24	83	8	60	46	27	2	23	1.63
35320470--35320527	29	2.0	29	89	0	89	22	41	15	20	1.90
35322662--35322714	16	3.2	16	75	2	52	43	13	3	39	1.62
35328494--35328552	21	2.8	20	80	14	57	54	3	1	40	1.27
35328534--35328632	11	9.6	11	66	23	56	61	0	2	36	1.07
35328546--35328588	19	2.3	19	95	0	77	69	0	0	30	0.88
35328520--35328631	52	2.2	49	92	6	188	60	0	1	37	1.07
35328586--35328632	10	4.6	11	77	22	50	59	0	2	38	1.09
35331112--35331144	14	2.3	15	89	5	50	24	0	0	75	0.80
35337885--35337955	27	2.7	25	77	12	79	61	0	1	36	1.05
35339719--35339854	41	3.4	41	76	9	147	33	22	17	27	1.96
35340012--35340058	24	2.0	24	84	16	62	51	17	0	31	1.46
35340159--35340198	14	2.9	13	85	10	53	32	2	17	47	1.61
35340320--35340358	20	2.0	20	94	0	69	48	2	0	48	1.15
35343275--35343307	14	2.4	14	94	0	57	15	9	60	15	1.58
35344324--35344381	22	2.6	22	78	10	55	46	3	1	48	1.29
35345946--35345980	18	2.0	18	88	5	54	65	0	8	25	1.21
35348106--35348239	64	2.1	64	92	0	223	36	10	13	39	1.79
35349099--35349133	18	2.0	18	88	5	54	54	0	0	45	0.99
35348986--35349301	157	2.0	156	95	0	569	44	2	5	47	1.39
35349256--35349289	17	2.0	17	88	11	52	55	0	0	44	0.99
35349268--35349457	61	3.1	61	69	17	196	48	6	2	42	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35349354--35349405	15	3.6	15	80	12	56	53	1	0	44	1.11
35349234--35349530	120	2.5	120	90	6	467	49	4	3	43	1.39
35349571--35349618	26	1.9	25	84	16	64	52	2	0	45	1.12
35349526--35349754	92	2.5	92	82	8	227	47	3	3	45	1.38
35352662--35352771	30	3.4	30	64	18	76	48	16	8	27	1.74
35352657--35352803	68	2.2	68	100	0	294	51	15	7	25	1.70
35353429--35353659	48	4.8	48	97	0	408	36	7	6	49	1.58
35353446--35353626	23	7.6	23	74	14	170	34	8	6	49	1.60
35354855--35354950	23	4.2	23	92	5	151	47	25	8	18	1.76
35354916--35354975	22	2.8	22	78	12	61	56	21	3	18	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170