genome.fa.s16.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  144  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43344994--43345108	38	2.9	38	89	5	167	39	14	8	37	1.77
43350765--43351041	46	6.0	46	92	1	448	36	9	25	28	1.87
43353697--43353749	27	2.0	27	96	0	97	43	5	15	35	1.70
43357671--43357703	2	16.5	2	100	0	66	48	0	0	51	1.00
43357940--43357969	14	2.1	14	93	0	51	16	6	10	66	1.41
43365146--43365256	41	2.7	41	85	0	150	23	29	18	28	1.97
43365677--43365810	72	1.9	72	85	0	187	41	14	2	41	1.57
43367179--43367203	13	1.9	13	100	0	50	68	24	0	8	1.16
43368908--43368949	22	1.9	22	85	9	59	40	0	19	40	1.51
43369394--43369461	25	2.7	25	80	8	75	25	26	13	35	1.92
43379266--43379368	9	11.4	9	89	0	143	24	7	23	44	1.79
43380202--43380307	42	2.5	42	87	0	149	32	46	3	17	1.66
43385182--43385226	17	2.6	17	79	6	56	53	0	2	44	1.13
43385273--43385327	25	2.2	25	81	12	60	49	5	1	43	1.36
43387456--43387492	7	5.3	7	93	0	65	43	0	0	56	0.99
43387457--43387502	21	2.2	21	88	0	65	47	2	2	47	1.26
43388206--43388242	16	2.3	16	90	0	56	27	2	16	54	1.56
43388359--43388397	16	2.5	16	87	4	53	41	17	15	25	1.89
43389674--43389727	16	3.4	16	79	5	56	61	12	3	22	1.47
43411127--43411164	15	2.4	16	78	8	51	44	7	0	47	1.32
43415901--43415952	16	3.2	16	94	0	86	28	0	36	34	1.58
43415933--43416027	45	2.1	44	88	1	136	34	5	27	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43416165--43416219	25	2.2	25	84	9	69	52	1	0	45	1.11
43416350--43416498	47	3.3	46	69	17	132	47	3	3	45	1.35
43423023--43423102	42	1.9	42	86	0	115	26	33	16	23	1.95
43432195--43432276	38	2.1	38	84	9	101	52	6	2	39	1.39
43432383--43432432	23	2.3	22	83	13	59	56	0	0	44	0.99
43435808--43435883	23	3.3	23	92	0	134	32	26	19	21	1.97
43443124--43443217	23	4.3	23	82	13	135	29	26	22	21	1.99
43443131--43443215	41	2.0	45	88	9	133	29	27	23	20	1.99
43444574--43444753	49	3.6	50	86	9	226	20	29	22	27	1.99
43444853--43444884	13	2.5	13	94	0	55	56	12	0	31	1.37
43445092--43445149	30	1.9	30	89	0	89	31	24	3	41	1.71
43445704--43445743	5	7.6	5	86	8	53	62	0	0	37	0.95
43448632--43448689	24	2.5	23	91	5	98	56	0	3	39	1.16
43451946--43451986	16	2.7	15	81	7	55	56	2	17	24	1.53
43451975--43452009	15	2.3	15	90	0	52	51	0	11	37	1.38
43452100--43452143	22	2.0	21	82	4	52	29	11	0	59	1.32
43456529--43456560	2	16.0	2	100	0	64	50	0	50	0	1.00
43460243--43460312	27	2.6	27	93	0	122	14	21	21	42	1.88
43460294--43460398	24	4.3	24	66	23	67	13	25	24	36	1.92
43460365--43460438	24	3.0	24	72	14	62	17	20	17	44	1.87
43483273--43483458	46	4.0	46	95	0	318	30	27	8	34	1.86
43484206--43484242	17	2.2	17	95	0	65	51	21	2	24	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43484372--43484537	21	8.0	21	65	12	76	42	17	23	16	1.89
43484389--43484536	42	3.6	41	77	11	140	43	16	22	17	1.88
43494232--43494369	29	4.6	29	71	11	82	31	21	6	39	1.79
43494254--43494314	32	1.9	32	86	0	86	31	21	1	45	1.61
43494874--43494908	18	1.9	18	94	0	61	74	2	22	0	0.95
43495010--43495050	18	2.3	18	86	0	55	36	51	12	0	1.40
43495230--43495264	15	2.3	15	95	0	61	85	5	8	0	0.73
43495714--43496069	18	19.9	18	70	11	205	30	11	10	46	1.75
43495711--43496126	35	11.7	34	70	14	145	31	12	10	45	1.75
43495804--43496101	36	8.4	36	72	9	150	30	12	10	46	1.74
43495983--43496023	20	2.0	20	86	9	57	43	7	9	39	1.65
43495713--43496127	18	23.4	17	69	14	128	32	12	10	45	1.75
43504421--43504456	18	2.0	18	100	0	72	33	5	44	16	1.71
43507026--43507093	15	4.5	15	75	15	59	83	7	7	1	0.86
43507026--43507094	22	3.2	21	78	11	68	84	7	7	1	0.85
43507030--43507100	23	3.0	22	78	17	72	80	8	8	2	1.00
43507026--43507065	17	2.4	17	88	12	57	85	10	2	2	0.80
43507028--43507072	12	3.9	12	78	18	51	84	11	2	2	0.80
43507813--43508472	75	8.7	73	81	8	596	28	15	20	36	1.92
43508220--43508499	70	3.8	73	80	7	273	27	14	21	36	1.92
43507889--43508472	305	1.9	303	83	8	763	27	15	20	37	1.92
43515497--43515589	25	3.6	25	74	8	80	17	22	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43523354--43523422	3	23.0	3	84	0	93	60	2	4	31	1.31
43525027--43525281	44	5.8	44	72	9	162	28	25	19	27	1.98
43525289--43525724	131	3.3	131	92	1	696	23	23	20	31	1.98
43526953--43526986	7	5.0	7	92	7	61	14	14	0	70	1.17
43526953--43526982	13	2.3	13	100	0	60	13	13	0	73	1.10
43527862--43527981	50	2.5	49	78	12	115	11	12	7	68	1.39
43527978--43528017	16	2.4	17	83	4	55	12	0	10	77	0.99
43533235--43533303	3	23.7	3	76	5	70	59	1	4	34	1.26
43535484--43535528	18	2.5	18	82	10	56	62	4	4	28	1.34
43535792--43535835	19	2.2	20	84	4	54	52	6	2	38	1.41
43535899--43535954	27	2.1	27	100	0	112	51	7	0	41	1.29
43539581--43539633	14	3.6	14	82	5	52	18	11	1	67	1.30
43541284--43541318	18	2.0	17	88	5	52	62	0	0	37	0.95
43541287--43541324	11	3.6	11	79	13	53	68	0	0	31	0.90
43541287--43541353	23	3.0	21	78	19	66	64	0	1	34	1.03
43545973--43546229	127	2.0	128	91	3	419	38	14	14	33	1.85
43546102--43546847	156	4.8	156	89	2	1056	39	14	14	31	1.86
43546102--43547293	312	3.9	309	83	6	1561	39	14	14	32	1.86
43546726--43546981	134	1.9	134	87	0	377	39	14	12	33	1.85
43546860--43547296	156	2.8	156	88	2	644	39	14	13	32	1.86
43547306--43547740	157	2.8	157	90	0	658	38	15	15	30	1.89
43546414--43548415	446	4.5	446	97	0	3396	37	15	15	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43547631--43547873	134	1.8	133	90	0	396	37	14	13	33	1.86
43547765--43548187	157	2.7	157	90	1	636	38	15	15	30	1.89
43548288--43548537	122	2.0	122	88	1	367	35	16	17	31	1.92
43548023--43549292	448	3.0	407	89	7	1716	37	15	15	31	1.89
43548612--43549047	157	2.8	157	90	1	651	38	15	15	30	1.89
43547908--43549340	291	5.0	289	71	16	1149	37	15	15	31	1.89
43548436--43549471	448	2.3	448	97	0	1925	38	15	15	31	1.89
43549060--43549471	157	2.6	156	89	0	608	38	14	15	31	1.88
43551896--43552680	156	5.0	156	87	2	1110	38	15	15	30	1.88
43551896--43553972	312	6.6	313	88	3	2886	38	14	15	31	1.89
43552506--43552857	177	2.0	177	89	1	535	39	15	15	30	1.88
43552683--43553972	156	8.3	155	90	2	1904	37	14	16	31	1.88
43551896--43553972	468	4.4	468	87	4	2943	38	14	15	31	1.89
43559233--43559274	18	2.4	17	84	11	50	40	19	0	40	1.51
43559636--43559741	34	3.0	33	78	15	113	33	17	17	30	1.94
43559665--43559739	38	2.0	38	91	0	123	34	18	17	29	1.94
43560741--43560787	21	2.2	22	92	3	78	21	38	19	21	1.94
43568193--43568260	29	2.3	29	80	7	75	41	19	16	23	1.90
43568452--43568492	20	2.0	20	85	4	55	65	4	0	29	1.13
43568738--43569076	168	2.0	168	90	1	536	36	4	9	48	1.57
43569950--43569999	27	2.0	26	88	11	77	52	0	2	46	1.12
43570610--43570647	20	1.9	20	89	10	60	52	2	0	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43570933--43570987	29	2.0	29	92	7	96	27	9	10	52	1.66
43573041--43573080	16	2.5	16	87	0	53	52	5	5	37	1.45
43573055--43573092	16	2.4	16	86	8	51	57	2	0	39	1.12
43577792--43577853	18	3.3	18	75	24	58	29	1	3	66	1.17
43581404--43581443	20	2.0	20	90	9	64	60	5	2	32	1.32
43585859--43585899	21	2.0	21	85	0	55	29	2	2	65	1.18
43586440--43586636	98	2.0	98	94	0	349	27	9	24	38	1.86
43587128--43587253	51	2.4	50	80	12	121	58	1	4	34	1.29
43587128--43587253	53	2.4	51	79	10	130	58	1	4	34	1.29
43588546--43588596	24	2.2	24	86	6	70	49	0	5	45	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170