genome.fa.s16.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  116  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35706148--35706191	22	2.0	22	100	0	88	50	13	13	22	1.77
35711907--35711971	9	6.9	9	73	15	51	67	1	4	26	1.18
35711881--35711924	22	2.0	23	82	13	56	50	2	0	47	1.13
35719536--35719742	106	2.0	106	94	0	360	34	15	16	32	1.91
35724679--35724745	27	2.5	27	95	0	116	31	22	32	13	1.92
35724741--35725128	19	19.6	19	67	24	159	31	0	14	52	1.46
35724815--35724904	21	4.1	21	79	20	112	31	0	13	55	1.38
35724824--35725128	27	12.0	27	69	21	189	32	0	14	52	1.47
35725066--35725117	8	6.1	8	80	12	59	38	0	11	50	1.39
35724744--35725196	202	2.3	202	95	1	822	31	0	14	52	1.47
35729056--35729105	24	2.1	24	96	0	91	44	14	10	32	1.78
35730705--35730813	35	3.1	35	98	0	209	30	7	13	48	1.70
35732065--35732146	29	2.8	29	79	0	83	17	23	14	45	1.85
35732107--35732215	29	3.8	29	81	4	130	21	24	11	42	1.86
35732044--35732215	87	2.0	86	80	5	195	20	25	12	41	1.88
35734226--35734336	19	5.8	19	86	0	159	40	8	12	38	1.73
35734233--35734336	38	2.7	38	93	0	181	41	7	11	39	1.70
35734226--35734362	19	6.9	21	82	7	96	39	7	13	39	1.73
35741252--35741277	8	3.2	8	100	0	52	0	23	0	76	0.78
35744622--35744651	2	15.0	2	92	0	51	0	46	0	53	1.00
35753397--35753429	15	2.2	15	94	0	57	21	9	27	42	1.83
35755089--35755132	15	3.1	15	77	12	56	27	4	2	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35755088--35755135	14	3.4	14	76	21	55	25	4	2	68	1.18
35758489--35758521	16	2.1	16	100	0	66	63	6	0	30	1.18
35761832--35761987	33	4.6	33	69	19	99	31	27	21	19	1.97
35764942--35765078	69	2.0	69	94	0	238	27	10	22	40	1.86
35770686--35770722	3	12.3	3	100	0	74	35	32	0	32	1.58
35772850--35772939	40	2.2	40	80	5	101	33	22	24	20	1.97
35772977--35773324	113	3.1	111	86	4	471	27	24	22	26	2.00
35773428--35773525	41	2.4	42	81	3	101	21	24	29	24	1.99
35773449--35773528	41	2.0	41	85	5	108	20	22	32	25	1.98
35775630--35775660	16	1.9	16	93	0	53	35	25	6	32	1.82
35776704--35776739	2	17.5	2	88	5	54	50	2	0	47	1.15
35778196--35778253	9	6.6	9	75	18	50	50	20	0	29	1.49
35778202--35778266	13	5.3	13	74	17	59	47	21	0	30	1.51
35778348--35778408	19	3.4	18	70	21	56	49	19	1	29	1.58
35778321--35778428	26	4.1	26	73	21	82	48	19	1	30	1.60
35778365--35778424	16	3.6	16	69	20	50	50	21	0	28	1.49
35778358--35778418	19	3.4	19	68	21	58	49	19	1	29	1.58
35778181--35778425	35	6.8	35	68	20	157	44	18	1	34	1.60
35778399--35778526	60	2.2	59	89	1	193	46	17	3	33	1.64
35783995--35784166	87	2.0	86	87	5	249	40	17	30	12	1.86
35784144--35784183	21	1.9	21	89	0	62	32	17	42	7	1.77
35784507--35784915	42	9.6	42	77	5	331	25	21	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35785165--35785203	21	1.9	20	89	5	60	43	0	2	53	1.14
35786655--35786721	29	2.2	30	81	7	73	32	1	11	53	1.47
35789456--35789505	21	2.3	21	86	10	66	52	0	2	46	1.12
35790907--35790944	20	1.9	20	94	0	67	21	15	7	55	1.66
35791089--35791145	20	3.0	19	72	7	53	33	0	1	64	1.04
35791624--35791663	7	5.7	7	100	0	80	42	0	0	57	0.98
35798027--35798065	19	2.0	19	85	5	51	64	5	0	30	1.15
35801007--35801057	25	2.0	25	84	0	66	11	7	1	78	1.04
35801431--35801501	6	11.8	6	74	16	51	4	18	1	76	1.03
35801432--35801501	27	2.6	27	78	14	74	4	18	1	75	1.04
35803337--35803527	50	3.8	50	85	1	240	21	29	23	25	1.99
35803864--35803920	30	1.9	29	82	10	71	31	24	3	40	1.72
35804723--35804860	63	2.2	64	84	1	170	29	26	21	21	1.99
35806257--35806292	16	2.2	17	90	5	56	25	13	0	61	1.33
35822855--35822885	15	2.1	15	93	0	53	32	22	12	32	1.92
35822946--35823004	20	2.9	21	80	7	59	47	23	8	20	1.77
35826270--35826328	11	5.4	11	77	0	55	15	3	15	66	1.39
35833561--35833595	18	1.9	18	94	0	61	25	31	8	34	1.86
35834006--35834104	44	2.2	44	89	3	146	40	0	12	47	1.41
35834018--35834104	44	2.0	45	93	2	149	39	0	12	48	1.41
35834072--35834234	25	6.7	25	76	12	169	44	1	13	40	1.52
35834230--35835023	29	31.0	23	69	23	252	45	26	0	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35834250--35834945	29	25.4	29	76	17	613	45	27	0	27	1.56
35834334--35834410	22	3.5	22	77	22	97	46	25	1	25	1.60
35834317--35834481	45	3.6	45	85	8	219	45	27	0	26	1.58
35834256--35834497	23	10.0	23	73	17	179	46	27	0	26	1.56
35834643--35834698	21	2.6	22	91	2	96	48	25	0	26	1.52
35834451--35834990	182	3.2	168	79	16	605	45	27	0	27	1.56
35834538--35834945	153	2.6	155	91	5	626	45	26	0	27	1.56
35834792--35834837	22	2.2	20	88	11	67	45	28	0	26	1.54
35834686--35834915	52	4.3	49	80	13	217	45	26	0	27	1.57
35835020--35835257	116	2.1	116	96	0	440	37	10	9	42	1.71
35835233--35835274	17	2.4	18	80	4	50	42	9	2	45	1.49
35838227--35838578	127	2.8	126	91	1	564	33	21	15	29	1.94
35838713--35838758	21	2.2	21	100	0	92	32	32	6	28	1.83
35839770--35839878	41	2.7	41	92	0	182	22	28	20	28	1.99
35839769--35839955	41	4.6	40	86	7	177	24	27	19	28	1.98
35852885--35853318	69	6.3	69	79	3	363	19	20	22	37	1.95
35852882--35853318	138	3.2	137	78	1	462	19	21	21	37	1.95
35861548--35861580	4	8.5	4	86	6	50	45	0	0	54	0.99
35865716--35865807	19	4.8	19	91	0	157	35	9	15	39	1.80
35865716--35865832	38	3.0	38	91	5	180	36	8	15	39	1.78
35872193--35872362	44	3.8	45	84	3	218	29	15	23	31	1.95
35872367--35872680	167	1.9	168	85	0	432	27	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35872420--35872742	167	1.9	166	81	5	391	28	18	25	27	1.98
35872835--35873094	50	5.2	50	63	4	137	32	20	21	26	1.97
35872685--35873094	100	4.1	100	86	1	500	32	20	20	26	1.97
35882269--35882360	19	4.8	19	97	0	166	36	8	16	38	1.79
35882269--35882383	57	1.9	59	89	6	180	36	7	15	40	1.77
35891870--35892123	90	2.8	90	78	3	278	29	7	11	50	1.66
35896062--35896136	30	2.5	30	95	0	141	26	38	16	18	1.91
35896211--35896325	51	2.3	51	96	0	212	27	30	0	41	1.56
35896326--35896391	10	6.5	10	75	3	60	34	0	0	65	0.93
35896327--35896391	31	2.1	31	100	0	130	33	0	0	66	0.92
35898590--35898658	25	2.7	25	88	2	111	46	1	11	40	1.49
35898654--35898903	18	15.5	18	66	22	155	48	24	0	27	1.55
35898715--35898797	29	2.9	29	87	0	121	45	24	0	30	1.53
35898744--35898936	47	4.1	47	92	1	316	47	25	0	26	1.56
35898837--35899087	29	8.8	29	78	13	263	45	28	0	25	1.59
35898899--35899087	64	3.0	64	85	9	291	44	29	0	24	1.58
35898884--35899141	58	4.4	58	83	8	292	44	28	0	26	1.57
35899070--35899146	18	4.3	19	74	9	74	45	23	0	31	1.53
35899035--35899146	47	2.3	47	89	9	161	44	25	0	29	1.54
35899142--35899305	55	3.0	55	86	6	199	40	10	5	43	1.62
35899178--35899443	65	4.2	62	76	14	278	39	9	5	46	1.58
35899233--35899267	18	1.9	18	88	0	52	34	8	2	54	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35899234--35899333	28	3.2	28	67	24	74	39	8	4	49	1.51
35899289--35899380	10	9.7	10	68	15	61	35	7	3	53	1.46
35899233--35899443	65	3.2	66	86	4	295	38	8	4	47	1.55
35899289--35899380	18	4.8	18	72	8	67	35	7	3	53	1.46
35899419--35899443	10	2.5	10	100	0	50	44	8	0	48	1.32
35902551--35902896	124	2.8	124	93	0	586	32	20	16	30	1.94
35905854--35906139	64	4.7	61	71	18	181	36	7	1	54	1.38
35905861--35905943	27	3.0	27	72	19	71	38	7	1	53	1.37
35905861--35906221	57	6.3	56	68	16	186	36	7	1	54	1.40
35905886--35906102	112	1.9	111	79	9	235	36	7	1	54	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170