genome.fa.s16.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  92  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28919834--28919896	25	2.6	25	76	2	65	33	19	25	22	1.97
28920931--28920971	17	2.4	16	84	15	55	24	14	7	53	1.66
28923024--28923097	36	2.1	36	89	0	112	28	2	21	47	1.65
28928136--28928168	17	2.0	17	88	5	50	51	0	15	33	1.43
28928553--28928612	25	2.4	25	83	8	77	31	21	21	25	1.98
28932265--28932321	22	2.6	21	86	5	78	15	15	31	36	1.90
28932244--28932356	60	1.9	60	83	0	145	20	17	26	35	1.95
28942186--28942260	37	2.0	37	92	0	123	34	5	14	45	1.68
28942259--28942289	9	3.4	9	90	0	53	25	0	22	51	1.48
28942285--28942334	9	5.6	9	87	0	73	28	8	16	48	1.74
28942259--28942298	18	2.2	18	86	0	53	27	2	20	50	1.61
28942267--28942335	27	2.6	27	90	4	104	26	5	18	49	1.70
28943149--28943198	25	2.0	26	84	7	68	20	14	12	54	1.71
28944961--28945068	37	2.9	37	92	0	171	26	32	18	22	1.97
28945231--28945756	48	11.0	47	82	8	185	29	28	8	33	1.87
28945317--28945690	48	7.8	48	91	0	595	31	27	6	34	1.83
28945271--28945690	96	4.4	96	95	2	704	30	27	7	34	1.84
28945216--28945690	144	3.3	144	86	4	606	30	27	7	34	1.85
28950265--28950321	26	2.2	26	87	0	78	12	17	38	31	1.87
28950262--28950334	26	2.8	26	75	8	76	13	16	38	31	1.88
28952570--28952641	27	2.7	27	87	6	94	18	12	29	40	1.87
28955723--28955771	24	2.0	24	100	0	98	42	8	8	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28956010--28956039	14	2.2	14	94	5	53	33	6	0	60	1.23
28957231--28957284	22	2.4	22	93	3	90	33	7	11	48	1.67
28964790--28964908	27	4.4	27	87	2	159	42	18	17	21	1.89
28964886--28964941	27	2.1	27	86	6	78	33	17	17	30	1.94
28964787--28964908	54	2.3	54	88	4	176	43	18	17	21	1.88
28972722--28972825	45	2.3	45	93	0	181	18	21	22	38	1.93
28978157--28978209	27	2.0	27	92	0	88	32	1	13	52	1.51
28988975--28989065	44	2.1	44	81	4	103	50	10	6	31	1.63
28994098--28994149	24	2.1	25	85	3	70	1	17	3	76	1.02
28994117--28994164	13	3.5	13	83	8	60	0	18	0	81	0.70
28994107--28994170	7	8.7	7	73	21	51	0	17	3	79	0.85
28994138--28994170	16	2.1	16	94	0	57	0	18	3	78	0.87
28995244--28995272	13	2.1	14	93	6	51	58	27	0	13	1.36
29000850--29000892	10	4.0	10	77	16	50	0	16	0	83	0.64
29000841--29000889	23	2.1	23	88	0	71	2	18	2	77	0.96
29000859--29000892	9	3.7	9	92	4	50	0	17	0	82	0.67
29003260--29003290	9	3.4	9	90	0	53	25	12	22	38	1.90
29003583--29003642	30	2.0	31	86	3	86	20	40	0	40	1.52
29006329--29006374	3	15.3	3	100	0	92	32	0	0	67	0.91
29021743--29021889	42	3.5	42	92	0	231	24	21	21	32	1.98
29022213--29022283	21	3.4	21	86	7	99	2	43	19	33	1.66
29027676--29027903	16	13.6	17	72	12	136	32	0	19	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29027760--29027841	42	1.9	43	80	11	98	32	2	20	43	1.65
29027711--29027903	9	22.9	9	76	12	153	32	1	20	46	1.58
29027938--29028038	37	2.7	37	90	1	157	35	6	8	48	1.61
29028019--29028112	19	5.1	18	72	13	75	39	2	9	48	1.48
29028089--29028169	35	2.3	36	87	4	121	35	4	8	50	1.55
29028203--29028241	20	2.0	20	100	0	78	43	5	5	46	1.48
29027887--29028423	287	1.9	288	94	4	951	37	4	9	48	1.56
29028225--29028423	37	5.5	37	74	12	169	38	5	9	46	1.59
29028312--29028351	17	2.4	17	87	4	55	40	0	15	45	1.46
29028405--29028443	20	2.0	20	100	0	78	43	5	5	46	1.48
29027977--29028629	202	3.4	195	81	11	669	38	4	9	47	1.57
29028425--29028560	37	3.8	36	89	3	202	36	5	10	47	1.62
29027975--29028141	56	3.0	57	85	4	234	37	4	9	48	1.57
29028425--29028560	72	1.9	72	93	0	236	36	5	10	47	1.62
29028496--29028629	56	2.4	56	88	3	198	38	4	8	48	1.53
29031096--29031139	19	2.2	20	88	4	63	27	2	43	27	1.67
29032166--29032256	21	4.3	21	72	10	78	46	42	1	9	1.44
29032164--29032260	7	13.9	7	72	0	50	46	43	1	9	1.42
29032166--29032267	21	4.9	21	69	9	64	49	40	0	9	1.43
29033208--29033540	113	2.9	113	82	7	379	27	24	22	25	2.00
29033527--29033645	40	3.0	40	81	13	124	17	21	23	37	1.94
29040745--29040796	25	2.1	25	96	0	95	21	26	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29041131--29041207	14	5.0	15	72	20	61	44	14	7	33	1.74
29041147--29041186	20	2.0	20	90	0	62	50	12	10	27	1.72
29041135--29041201	34	1.9	35	93	3	118	47	13	7	31	1.70
29045284--29045313	15	2.0	15	100	0	60	40	6	20	33	1.78
29051632--29051664	12	2.6	13	90	9	59	30	6	0	63	1.18
29052722--29052770	20	2.5	18	78	18	53	18	16	10	55	1.69
29056324--29056363	13	3.2	12	83	16	55	82	5	12	0	0.82
29056309--29056363	17	3.2	17	78	16	60	80	3	14	1	0.94
29057245--29057511	143	1.9	143	91	0	435	28	20	22	28	1.98
29057567--29057596	14	2.1	14	100	0	60	20	23	40	16	1.91
29059245--29059269	12	2.1	12	100	0	50	24	0	0	76	0.80
29060010--29060128	33	3.6	33	82	6	152	40	8	9	42	1.67
29060003--29060128	65	1.9	65	95	0	225	39	7	10	42	1.68
29062477--29062642	85	2.0	85	84	5	221	38	18	9	34	1.82
29062829--29062932	29	3.6	28	77	11	95	66	0	2	29	1.13
29063129--29063172	20	2.3	20	84	7	65	27	11	2	59	1.44
29063265--29063308	19	2.3	19	84	7	54	25	9	2	63	1.35
29063468--29063638	87	2.0	86	82	5	211	33	9	19	37	1.84
29064392--29064443	9	5.8	9	90	0	77	42	21	11	25	1.86
29069200--29069376	84	2.1	84	87	2	248	55	1	18	25	1.49
29069377--29069594	84	2.6	84	87	0	301	23	16	3	55	1.57
29069628--29069679	2	26.0	2	100	0	104	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29070724--29070813	23	4.0	23	75	7	87	21	18	20	40	1.92
29075768--29075817	26	1.9	26	95	0	91	32	24	20	24	1.98
29083249--29083316	26	2.6	26	83	0	82	36	23	20	19	1.95
29084936--29084995	30	2.0	31	86	3	86	40	0	40	20	1.52
29085209--29085245	9	4.1	9	89	0	56	29	8	16	45	1.76
29085297--29085327	9	3.4	9	90	0	53	38	22	12	25	1.90
29086986--29087023	19	2.0	19	85	10	51	42	0	15	42	1.47
29088303--29088344	19	2.2	19	83	8	50	38	4	0	57	1.20
29092676--29092732	30	1.9	30	96	0	105	19	15	24	40	1.90
29094964--29095066	31	3.4	30	68	5	82	34	10	25	29	1.89
29097257--29097688	88	4.9	88	91	0	659	32	21	26	19	1.97
29097265--29097688	44	9.6	44	83	0	524	32	21	26	19	1.97
29097683--29098096	88	4.7	88	93	0	677	26	22	27	23	2.00
29097753--29098067	44	7.2	44	65	14	166	23	23	27	25	2.00
29099071--29099110	17	2.3	18	87	12	57	20	2	2	75	1.04
29099463--29099504	19	2.2	19	83	8	50	38	4	0	57	1.20
29102151--29102219	23	3.0	23	89	0	102	21	20	20	37	1.94
29102196--29102243	21	2.3	21	81	0	60	18	25	18	37	1.94
29109579--29109861	45	6.3	45	77	5	234	24	20	15	40	1.90
29109608--29109861	45	5.7	44	78	6	242	24	19	14	41	1.89
29117038--29117099	24	2.5	25	82	7	65	33	8	8	50	1.61
29117513--29117545	12	2.8	12	90	9	50	15	9	0	75	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29118608--29118667	30	2.0	30	87	6	86	38	13	1	46	1.53
29118694--29118732	20	2.0	20	85	10	53	23	2	7	66	1.30
29122213--29122255	19	2.3	19	88	8	61	25	20	6	46	1.76
29130371--29130668	44	6.8	43	65	4	130	27	24	25	22	2.00
29130298--29130737	87	5.0	87	88	0	619	29	22	24	22	1.99
29130329--29130737	175	2.3	174	89	1	604	29	22	24	23	1.99
29132355--29132414	30	2.0	30	83	6	77	36	13	3	46	1.60
29133883--29133957	36	2.1	36	85	5	98	30	10	21	37	1.87
29134249--29134407	79	2.0	79	98	0	309	23	18	22	35	1.95
29134702--29134748	17	2.7	18	87	6	62	34	6	14	44	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170