genome.fa.s16.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  68  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20331641--20331701	25	2.3	25	76	15	61	44	14	8	32	1.75
20339720--20339764	22	2.0	22	87	8	65	13	17	6	62	1.52
20343001--20343045	20	2.4	19	82	10	58	53	4	2	40	1.33
20343059--20343092	18	1.9	18	88	5	52	50	0	8	41	1.34
20351106--20351156	26	2.0	26	100	0	102	39	21	19	19	1.93
20351330--20351470	27	5.3	27	82	3	162	18	18	21	41	1.90
20351330--20351470	53	2.7	51	84	5	167	18	18	21	41	1.90
20351675--20351709	17	2.0	18	88	5	54	22	40	25	11	1.88
20358877--20359046	27	6.3	26	81	6	178	17	16	22	44	1.87
20358877--20359046	81	2.1	80	85	5	236	17	16	22	44	1.87
20360812--20360862	24	2.1	25	85	3	68	41	0	1	56	1.10
20363526--20363646	63	1.9	63	93	0	206	42	0	28	28	1.61
20365703--20365749	20	2.3	20	81	0	58	23	12	34	29	1.92
20371336--20371392	26	2.2	26	87	3	78	52	10	12	24	1.70
20377008--20377185	27	6.6	27	82	3	196	26	14	28	30	1.95
20377005--20377185	82	2.2	81	82	2	220	27	14	27	30	1.95
20384888--20384948	27	2.3	26	78	16	70	52	8	8	31	1.60
20387091--20387144	7	7.6	7	77	4	54	20	0	29	50	1.49
20387269--20387338	26	2.7	26	100	0	140	30	12	17	40	1.87
20388393--20388444	22	2.3	23	80	6	61	17	38	3	40	1.68
20392116--20392290	43	4.1	43	88	0	251	26	17	29	26	1.98
20392454--20392488	8	4.2	8	85	7	52	68	8	0	22	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20392451--20392490	17	2.4	17	87	12	64	67	10	0	22	1.20
20393769--20393809	9	4.6	9	90	0	64	56	7	2	34	1.40
20406770--20406805	17	2.1	18	89	5	56	72	0	8	19	1.10
20414173--20414412	42	5.7	42	76	6	200	22	18	20	39	1.93
20414207--20414368	83	1.9	84	87	5	238	24	18	20	37	1.94
20416984--20417075	33	2.8	32	73	17	91	54	3	1	41	1.24
20430579--20430957	184	2.1	184	91	0	614	33	13	16	36	1.88
20432699--20432796	44	2.2	45	96	3	182	53	16	0	30	1.43
20433439--20433466	14	2.0	14	100	0	56	35	7	0	57	1.26
20433915--20433952	19	2.0	19	85	10	51	21	42	0	36	1.53
20438013--20438160	43	3.5	42	78	4	154	31	24	15	28	1.95
20441057--20441122	32	2.1	32	100	0	132	33	21	6	39	1.78
20442246--20442296	26	1.9	27	84	4	68	39	1	3	54	1.30
20442285--20442348	19	3.4	18	78	8	65	35	1	4	57	1.29
20442873--20442915	18	2.4	17	77	11	50	41	0	4	53	1.21
20442893--20442949	27	2.1	27	83	0	69	45	0	5	49	1.24
20442919--20442961	19	2.3	19	88	4	61	41	0	4	53	1.21
20449869--20449903	14	2.5	14	90	9	54	57	2	2	37	1.29
20451861--20451890	15	2.0	15	100	0	60	86	6	6	0	0.70
20458021--20458122	22	4.6	22	78	0	87	10	22	23	43	1.85
20463960--20464028	36	1.9	36	100	0	138	66	2	5	24	1.27
20463973--20464030	17	3.3	17	68	17	55	68	1	5	24	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20464911--20464968	22	2.6	22	81	7	64	41	17	5	36	1.72
20464940--20464991	19	2.9	17	84	15	70	32	19	9	38	1.84
20465429--20465816	131	2.9	131	83	3	503	26	26	18	28	1.98
20465808--20466079	89	3.1	89	81	3	289	26	23	21	28	1.99
20466167--20466280	44	2.6	44	77	6	115	34	19	16	29	1.94
20466385--20466509	44	2.9	44	81	2	146	27	24	19	29	1.98
20466218--20466646	225	1.9	225	83	6	559	29	20	18	31	1.96
20466638--20466676	19	2.1	19	85	4	53	33	15	10	41	1.81
20466657--20467111	44	10.2	44	77	5	353	28	22	17	31	1.97
20466656--20467108	178	2.6	178	85	1	604	28	22	17	31	1.97
20476954--20477246	50	5.7	50	83	4	320	25	22	27	23	1.99
20476954--20477189	101	2.3	103	85	5	298	25	23	29	22	1.99
20481455--20481480	6	4.3	6	100	0	52	80	0	0	19	0.71
20481634--20481693	29	2.1	29	100	0	120	23	20	16	40	1.91
20507095--20507147	23	2.4	22	76	20	56	9	18	1	69	1.25
20509686--20509715	10	3.0	10	90	0	51	20	3	20	56	1.56
20509698--20509728	15	2.0	16	93	6	55	25	3	12	58	1.50
20512130--20512188	31	1.9	31	89	0	91	32	8	13	45	1.74
20516683--20517017	27	12.6	27	79	6	305	38	18	16	26	1.91
20516881--20516973	48	1.9	48	80	8	109	37	18	19	24	1.94
20516828--20517017	102	1.9	102	87	2	283	38	19	16	24	1.92
20516691--20517029	129	2.6	129	83	7	346	38	18	17	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20525444--20525485	15	2.7	16	85	14	61	71	0	28	0	0.86
20525446--20525487	21	2.0	21	86	13	61	73	0	26	0	0.83
20544538--20544714	45	4.0	45	91	2	252	22	16	27	33	1.96
20545012--20545057	21	2.1	22	88	4	67	43	0	10	45	1.39
20553515--20553554	22	1.9	22	90	10	66	20	10	15	55	1.68
20561643--20561822	51	3.6	50	81	6	184	26	17	26	29	1.98
20568065--20568123	11	5.2	11	75	20	50	42	0	35	22	1.54
20571468--20571649	51	3.6	50	75	10	149	22	14	29	33	1.94
20576242--20576528	50	5.6	50	86	3	351	26	20	29	23	1.99
20577078--20577115	16	2.4	16	100	0	76	47	10	21	21	1.80
20586982--20587024	21	2.2	20	83	8	52	13	32	6	46	1.71
20593782--20593819	11	3.3	12	85	7	53	36	2	0	60	1.11
20593782--20593881	9	9.9	10	74	18	66	40	2	1	57	1.17
20593773--20593916	40	3.5	41	81	10	150	36	2	1	59	1.18
20596144--20596168	3	8.3	3	100	0	50	36	0	0	64	0.94
20603865--20603893	13	2.2	13	100	0	58	13	27	20	37	1.91
20604959--20605000	21	2.0	21	100	0	84	19	19	19	42	1.89
20606360--20606407	6	7.8	6	83	2	51	47	4	29	18	1.67
20606407--20606507	50	2.0	50	92	0	166	44	10	17	26	1.82
20613793--20613869	13	5.4	13	71	19	55	37	2	41	18	1.64
20615994--20616028	18	2.0	18	88	5	54	31	11	5	51	1.61
20617801--20617944	20	7.2	20	67	6	94	18	29	18	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20617801--20617955	40	3.9	40	87	0	220	18	29	17	34	1.94
20622632--20622710	27	2.9	27	82	1	95	21	20	29	29	1.98
20624706--20624803	50	2.0	50	95	0	178	30	12	34	22	1.91
20631662--20631927	137	1.9	137	84	3	356	33	29	18	18	1.95
20635076--20635259	40	4.6	40	82	6	196	23	20	27	28	1.99
20635076--20635256	80	2.3	81	83	9	221	23	20	27	27	1.99
20635157--20635306	40	3.8	38	80	10	131	25	22	28	24	1.99
20652080--20652147	35	1.9	35	85	5	93	42	1	0	55	1.08
20652071--20652203	15	9.2	15	64	19	59	42	2	0	54	1.12
20652071--20652241	58	3.0	58	95	2	301	42	3	0	54	1.17
20652497--20652673	7	25.0	7	67	17	62	35	42	2	19	1.66
20652900--20652932	14	2.3	15	94	5	59	36	33	0	30	1.58
20653284--20653327	20	2.3	19	80	7	52	61	6	6	25	1.46
20653335--20653643	41	7.7	40	77	8	290	30	28	19	21	1.98
20653335--20653643	82	3.9	82	76	9	321	30	28	19	21	1.98
20653508--20653556	17	2.9	17	90	0	80	44	28	10	16	1.80
20653335--20653638	116	2.5	117	83	6	362	30	28	19	22	1.98
20656195--20656240	23	2.0	23	91	0	74	28	4	23	43	1.73
20658649--20658870	48	4.8	48	78	10	207	18	4	33	43	1.71
20658647--20658870	93	2.4	92	86	5	310	17	4	33	43	1.71
20658716--20658870	22	6.8	23	79	7	138	17	5	34	42	1.71
20661047--20661085	14	2.7	15	84	8	53	35	0	25	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20670154--20670190	20	1.9	18	89	10	56	24	21	16	37	1.93
20670978--20671039	26	2.4	26	77	0	70	37	9	14	38	1.79
20678667--20678730	30	2.2	30	94	2	112	31	0	45	23	1.53
20678667--20678722	16	3.7	16	72	18	57	30	0	46	23	1.53
20684106--20684148	19	2.2	19	83	8	50	48	13	2	34	1.56
20687164--20687356	51	3.9	49	80	5	208	23	15	29	32	1.95
20687170--20687354	101	1.8	102	85	3	266	24	15	28	31	1.96
20687358--20687448	45	2.0	45	91	0	146	26	17	23	32	1.96
20695975--20696021	24	2.0	24	100	0	94	36	12	21	29	1.91
20696302--20697454	44	25.8	44	71	9	498	31	19	21	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170