genome.fa.s16.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  148  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44280330--44280558	116	2.0	116	92	0	386	20	9	19	51	1.74
44307593--44307636	20	2.2	20	84	8	54	68	0	6	25	1.14
44307584--44307740	28	6.0	26	68	15	67	66	2	3	27	1.19
44307586--44307760	9	19.7	9	70	16	98	65	2	4	27	1.24
44307707--44307758	26	1.9	28	88	7	81	67	3	3	25	1.25
44308120--44308281	68	2.4	68	97	0	315	35	11	27	25	1.91
44308315--44308365	19	2.6	20	79	14	61	27	1	3	66	1.20
44308426--44308638	18	11.8	17	71	19	121	30	3	1	64	1.18
44308434--44308499	8	7.8	8	74	17	53	27	1	3	68	1.13
44308426--44308638	17	11.8	16	68	20	77	30	3	1	64	1.18
44308549--44308606	11	5.3	11	85	0	62	29	5	0	65	1.14
44308541--44308607	20	3.2	21	78	12	59	31	4	0	64	1.14
44308426--44308638	9	23.4	9	68	21	92	30	3	1	64	1.18
44308461--44308715	130	2.0	131	98	1	496	33	4	0	62	1.15
44308581--44308643	26	2.4	26	84	7	74	26	4	0	68	1.10
44308529--44308691	17	8.9	17	68	20	55	34	4	0	61	1.16
44309640--44309683	17	2.5	17	85	7	52	54	13	0	31	1.39
44311951--44312144	98	2.0	98	94	0	343	37	22	10	29	1.87
44312363--44312435	22	3.4	21	77	15	62	58	4	8	28	1.45
44312372--44312438	26	2.8	25	73	26	65	59	4	7	28	1.44
44314173--44314906	44	16.8	44	70	14	251	26	23	20	29	1.99
44314109--44315071	217	4.4	218	88	0	1392	27	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44314109--44315071	435	2.2	434	92	1	1595	27	22	20	29	1.98
44326422--44326618	98	2.0	98	94	0	349	37	22	9	30	1.86
44326851--44326911	22	2.8	21	79	16	61	59	4	8	27	1.47
44328266--44328307	17	2.5	17	88	0	57	2	16	38	42	1.61
44329102--44329200	23	4.3	23	81	0	117	24	19	24	32	1.97
44337374--44337428	28	1.9	29	92	3	94	41	7	0	50	1.30
44337380--44337442	28	2.2	29	82	2	74	49	6	0	44	1.28
44341263--44341287	11	2.3	11	100	0	50	48	8	24	20	1.76
44361754--44361857	52	2.0	52	83	3	129	45	4	15	34	1.67
44364962--44365021	31	2.0	31	90	3	95	38	10	16	35	1.82
44371121--44371164	23	1.9	23	95	0	79	36	38	0	25	1.56
44371136--44371166	16	1.9	16	93	0	53	35	38	0	25	1.56
44375770--44375796	11	2.5	11	100	0	54	29	0	0	70	0.88
44379456--44379480	5	5.0	5	100	0	50	0	20	0	80	0.72
44381529--44381574	22	2.1	21	84	4	56	17	4	19	58	1.55
44381560--44381643	23	3.7	23	85	0	114	21	8	27	42	1.81
44386188--44386260	28	2.7	27	68	19	62	41	2	1	54	1.23
44386239--44386436	66	3.2	63	69	20	175	41	3	6	48	1.46
44386201--44386436	120	2.0	120	89	6	363	41	3	5	49	1.44
44386326--44386377	15	3.6	15	80	12	56	44	0	1	53	1.11
44386598--44386632	16	2.2	16	100	0	70	57	11	0	31	1.34
44386669--44386703	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44394155--44394195	21	2.0	21	90	0	64	31	26	9	31	1.89
44395015--44395066	27	1.9	27	84	0	68	53	9	21	15	1.70
44396098--44396180	41	2.0	41	100	0	166	24	9	26	39	1.86
44397503--44397553	3	16.3	3	76	15	50	35	1	3	58	1.28
44399109--44399208	44	2.2	44	91	1	155	20	19	20	41	1.91
44399188--44399236	6	7.8	6	86	11	64	18	16	16	48	1.81
44401447--44401590	33	4.5	33	73	13	129	45	12	21	20	1.84
44401402--44401588	96	2.0	95	83	7	236	45	13	20	20	1.84
44404206--44404287	21	3.8	23	73	12	84	39	23	20	17	1.92
44405431--44405471	13	3.2	13	93	3	66	4	24	4	65	1.32
44410798--44410852	24	2.3	25	78	15	62	45	0	0	54	0.99
44410813--44410852	14	2.9	14	84	0	53	45	0	0	55	0.99
44418404--44418428	11	2.3	11	100	0	50	64	0	0	36	0.94
44423816--44423863	20	2.5	20	89	3	71	70	2	2	25	1.09
44423816--44423883	19	3.5	20	84	9	79	69	1	1	27	1.06
44424190--44424266	20	3.7	21	76	13	72	35	0	0	64	0.93
44424207--44424267	26	2.2	28	82	8	81	34	0	0	65	0.93
44425847--44426224	125	3.0	125	90	1	571	31	14	21	32	1.94
44429312--44429379	17	3.8	17	71	16	57	48	1	5	44	1.36
44429447--44429886	23	19.8	23	79	10	461	26	0	25	47	1.54
44429447--44429890	44	10.0	44	86	5	535	26	0	26	47	1.54
44429447--44429841	111	3.6	110	89	3	571	26	0	26	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44429447--44429886	155	2.8	154	88	4	629	26	0	25	47	1.54
44431010--44431034	7	3.6	7	100	0	50	60	12	0	28	1.32
44432133--44432163	12	2.6	12	94	0	53	54	0	0	45	0.99
44432137--44432175	11	3.5	11	82	10	53	58	0	0	41	0.98
44438445--44438678	125	1.9	125	91	0	387	35	20	13	30	1.91
44440500--44441037	296	1.8	291	82	7	683	27	13	17	42	1.86
44444442--44444469	13	2.2	13	100	0	56	21	0	32	46	1.52
44450870--44450957	45	2.0	45	88	4	133	40	5	5	47	1.51
44455417--44455446	15	1.9	16	93	6	53	73	6	0	20	1.05
44455727--44455788	30	2.1	30	87	6	90	20	35	0	43	1.53
44456944--44457008	27	2.4	28	73	14	64	38	9	3	49	1.51
44458655--44458690	15	2.4	15	90	0	54	75	0	0	25	0.81
44463216--44463258	20	2.0	22	86	8	63	30	0	6	62	1.21
44463501--44463564	32	2.0	32	81	3	76	31	1	4	62	1.25
44466592--44466671	26	3.1	26	72	12	67	21	22	18	37	1.94
44467019--44467049	15	2.0	16	93	6	55	41	12	0	45	1.42
44468718--44468749	16	2.0	16	93	0	55	25	15	0	59	1.36
44468977--44469167	51	3.8	51	79	8	237	30	28	17	24	1.97
44468970--44469155	102	1.8	102	89	3	286	30	27	17	24	1.97
44485633--44485673	20	2.0	20	100	0	82	43	4	41	9	1.59
44486540--44486584	20	2.2	20	88	11	65	68	0	31	0	0.89
44486518--44486583	14	4.6	14	78	14	64	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44486518--44486585	34	2.0	33	86	8	93	69	0	30	0	0.89
44486770--44486826	19	2.9	19	86	2	78	35	0	12	52	1.39
44486745--44486979	83	2.8	83	73	14	219	31	0	11	55	1.42
44486871--44486937	19	3.4	19	80	11	89	29	1	13	55	1.47
44486746--44486979	42	5.5	40	72	20	172	31	0	11	55	1.42
44486880--44487006	27	5.1	26	76	19	137	33	0	11	54	1.43
44486880--44487059	48	3.7	49	82	7	217	31	0	13	53	1.44
44487052--44487148	33	3.1	33	67	24	84	32	0	11	55	1.35
44487047--44487168	60	2.0	60	87	3	174	30	0	13	54	1.45
44487202--44487283	38	2.2	38	97	0	155	54	3	2	39	1.31
44487320--44487361	16	2.7	15	85	7	57	38	2	2	57	1.25
44488985--44489034	12	4.2	12	89	0	73	36	38	26	0	1.57
44488985--44489038	18	3.0	18	94	0	90	35	40	24	0	1.55
44488988--44489038	6	8.5	6	91	0	66	35	43	21	0	1.53
44492361--44492403	22	2.0	21	90	4	68	0	34	2	62	1.08
44492374--44492408	18	1.9	18	88	0	52	0	40	2	57	1.14
44492475--44492550	27	2.8	28	90	4	113	19	38	25	17	1.93
44495457--44495482	13	2.0	13	100	0	52	30	23	23	23	1.99
44501890--44501940	18	2.8	18	87	0	75	27	21	15	35	1.94
44508069--44508110	20	2.0	22	86	13	61	59	4	0	35	1.19
44508083--44508145	29	2.1	30	85	2	83	66	0	1	31	1.01
44508083--44508155	29	2.5	31	72	14	75	61	0	1	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44508562--44508613	24	2.2	24	89	0	77	53	7	1	36	1.41
44519477--44519510	11	3.1	11	100	0	68	44	8	11	35	1.72
44519765--44519802	18	2.1	18	95	0	67	50	21	5	23	1.69
44520398--44520431	16	2.1	16	94	0	59	52	0	35	11	1.38
44530000--44530107	3	36.0	3	85	3	92	33	8	1	56	1.40
44534398--44534443	17	2.8	18	84	15	64	28	41	30	0	1.56
44534773--44534843	24	3.0	23	76	14	72	42	21	32	4	1.72
44534779--44534926	66	2.2	66	83	2	181	39	23	31	4	1.75
44534932--44534992	30	2.0	30	83	0	77	36	21	32	9	1.86
44535034--44535082	24	2.0	24	84	0	62	32	26	30	10	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170