genome.fa.s16.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  167  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49609693--49609972	46	6.6	45	84	10	272	35	14	21	28	1.93
49609731--49609841	37	3.0	37	93	0	186	38	13	19	27	1.90
49620473--49620500	2	14.0	2	100	0	56	50	0	0	50	1.00
49625359--49625595	119	2.0	119	81	4	282	46	11	13	28	1.77
49633334--49633370	19	2.0	20	89	10	60	37	0	8	54	1.30
49644419--49644453	15	2.2	16	90	5	54	57	14	11	17	1.66
49661586--49661625	21	1.9	21	89	0	62	12	2	27	57	1.48
49665608--49665667	31	1.9	31	90	6	95	36	13	11	38	1.81
49668385--49668410	11	2.4	11	100	0	52	0	0	7	92	0.39
49673706--49673753	17	2.9	17	73	14	55	50	31	6	12	1.65
49673706--49673772	33	2.1	32	88	8	100	47	26	10	14	1.77
49675205--49675247	22	2.0	22	81	9	52	9	13	13	62	1.53
49677180--49677206	3	9.0	3	100	0	54	33	0	66	0	0.92
49690532--49690578	21	2.3	20	85	10	60	10	2	10	76	1.10
49690532--49690588	22	2.6	21	81	13	62	12	1	8	77	1.07
49690664--49690719	19	2.9	19	86	7	78	33	3	1	60	1.24
49694240--49694271	2	16.0	2	100	0	64	50	0	0	50	1.00
49696664--49696705	20	2.1	20	95	0	75	54	4	11	28	1.57
49700712--49700743	15	2.1	15	100	0	64	37	31	6	25	1.81
49700903--49700966	27	2.3	29	91	5	105	42	9	0	48	1.35
49701356--49701419	19	3.4	19	78	4	85	35	10	1	51	1.47
49701649--49701707	19	3.2	19	82	4	84	49	0	13	37	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49702350--49702402	27	2.0	26	92	3	88	33	0	9	56	1.32
49705301--49705408	15	7.2	15	67	12	78	44	7	22	25	1.79
49705294--49705408	30	3.8	30	96	0	185	46	6	21	25	1.76
49709233--49709274	21	2.0	21	90	4	68	52	4	0	42	1.22
49712918--49712958	17	2.5	17	88	4	57	53	7	4	34	1.50
49724765--49724881	58	2.0	58	100	0	234	40	15	13	30	1.86
49726001--49726028	3	9.3	3	100	0	56	67	0	0	32	0.91
49728704--49728757	28	1.9	28	92	0	90	12	12	3	70	1.30
49735496--49735582	34	2.5	35	81	7	97	27	21	20	29	1.98
49740357--49740490	42	3.2	42	89	2	189	44	10	30	14	1.78
49740547--49740875	76	4.3	76	96	0	604	23	6	27	41	1.80
49745512--49745554	22	2.0	22	90	0	68	48	6	27	16	1.71
49749179--49749241	30	2.1	30	90	0	99	26	3	12	57	1.51
49750786--49750820	10	3.4	10	92	4	52	25	0	0	74	0.82
49754581--49754704	62	2.0	62	96	0	230	46	9	13	29	1.75
49754586--49754686	34	3.1	34	65	21	90	47	8	12	30	1.72
49755818--49755842	2	12.5	2	100	0	50	48	0	0	52	1.00
49759959--49760003	24	1.9	23	86	4	63	57	6	4	31	1.44
49762262--49762297	3	12.0	3	87	0	54	36	2	33	27	1.72
49769800--49769833	14	2.4	14	90	0	50	35	0	0	64	0.94
49773012--49773069	17	3.5	17	72	13	66	58	5	3	32	1.37
49772997--49773067	33	2.2	33	94	0	124	56	4	2	36	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49774143--49774206	31	2.1	30	85	5	85	42	6	4	46	1.49
49798892--49798925	15	2.3	15	100	0	68	8	5	26	58	1.51
49800475--49800635	26	6.5	25	66	21	81	42	0	3	53	1.23
49800561--49800606	18	2.6	19	80	13	53	41	0	2	56	1.11
49800623--49800674	22	2.4	21	79	17	54	38	0	5	55	1.24
49800664--49800699	16	2.3	16	95	4	65	47	0	5	47	1.25
49800456--49800748	122	2.4	122	95	1	527	42	0	4	52	1.23
49800960--49800999	16	2.5	16	91	0	62	32	37	0	30	1.58
49804736--49804807	6	12.0	6	100	0	144	33	0	16	50	1.46
49809619--49809658	16	2.3	18	87	8	57	62	0	22	15	1.32
49813960--49814060	45	2.3	45	84	1	132	15	1	23	58	1.48
49813960--49814078	44	2.7	44	84	2	132	16	1	26	55	1.51
49813976--49814078	45	2.3	45	83	3	120	16	1	29	52	1.55
49816748--49816795	25	1.9	25	86	0	69	22	8	6	62	1.46
49840728--49840758	11	2.8	11	95	0	53	48	0	0	51	1.00
49843988--49844066	39	2.0	39	100	0	158	32	10	27	29	1.89
49853847--49853897	18	2.7	19	76	14	52	50	13	3	31	1.60
49871233--49871395	81	2.0	80	82	3	193	36	22	14	25	1.93
49874667--49874716	22	2.3	22	82	0	64	62	8	0	30	1.24
49874699--49874742	18	2.3	19	84	11	63	54	4	0	40	1.21
49874700--49874747	18	2.7	18	87	6	62	54	4	0	41	1.20
49874753--49874808	10	5.5	10	76	14	53	67	1	3	26	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49874752--49874808	21	2.8	20	76	19	64	66	1	3	28	1.18
49886369--49886420	19	2.9	17	81	10	61	38	13	15	32	1.86
49888705--49888733	6	4.8	6	100	0	58	86	0	0	13	0.58
49892382--49892414	9	3.7	9	91	0	57	45	21	9	24	1.80
49895852--49895945	3	31.7	3	72	10	77	60	5	2	31	1.31
49897635--49898066	88	4.9	88	91	2	681	25	25	23	26	2.00
49906401--49906458	19	3.2	19	83	9	68	36	0	1	62	1.06
49913573--49913639	24	2.8	24	69	15	66	17	8	43	29	1.80
49917666--49917716	21	2.4	21	83	3	66	33	0	1	64	1.05
49919900--49919940	6	6.8	6	91	0	55	36	2	43	17	1.62
49920338--49920501	69	2.4	69	89	1	247	30	15	17	36	1.91
49920408--49921048	342	1.9	333	84	4	847	26	19	23	31	1.98
49924914--49925181	135	2.0	135	86	5	373	32	5	29	32	1.82
49925167--49925209	4	10.8	4	84	0	59	27	4	23	44	1.73
49925167--49925209	16	2.7	16	92	0	77	27	4	23	44	1.73
49928603--49928672	3	23.0	3	81	18	83	67	1	2	28	1.14
49928691--49928758	26	2.5	26	76	9	66	72	2	5	19	1.19
49933101--49933222	23	5.3	23	89	0	199	30	27	21	21	1.98
49933101--49933222	46	2.7	46	97	0	226	30	27	21	21	1.98
49933448--49933486	18	2.2	17	86	13	53	46	20	0	33	1.51
49934901--49934959	29	2.1	28	96	3	109	37	6	18	37	1.78
49938319--49938402	42	2.0	43	90	2	134	34	20	9	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49943234--49943305	36	2.0	36	100	0	144	33	5	19	41	1.75
49953270--49953302	16	2.1	16	100	0	66	36	18	6	39	1.75
49957441--49957510	29	2.4	28	86	6	88	45	2	14	37	1.59
49971998--49972071	18	4.1	18	83	0	103	31	12	24	32	1.92
49971979--49972067	36	2.5	36	88	0	124	32	12	23	31	1.92
49982004--49982033	15	2.0	15	93	0	51	43	6	0	50	1.28
49983547--49983586	18	2.3	18	87	12	57	55	2	10	32	1.47
49992144--49992185	22	1.9	22	85	9	59	47	0	0	52	1.00
49995234--49995278	23	2.0	23	91	4	74	46	17	4	31	1.68
49995267--49995297	16	1.9	16	93	0	53	38	12	9	38	1.77
49997828--49997854	11	2.5	11	100	0	54	51	0	0	48	1.00
50004067--50004091	13	1.9	13	100	0	50	60	16	8	16	1.58
50010957--50010999	13	3.4	13	81	12	54	58	4	0	37	1.19
50011424--50011525	30	3.4	30	86	2	134	29	21	3	45	1.70
50012844--50012892	16	3.0	16	80	16	64	32	14	12	40	1.83
50012891--50012928	19	2.0	20	94	5	69	42	13	10	34	1.78
50012920--50012970	1	51.0	1	80	0	57	90	0	0	9	0.46
50012920--50012969	9	5.9	9	90	9	79	90	0	0	10	0.47
50012920--50012967	25	2.0	25	95	4	89	89	0	0	10	0.48
50013035--50013468	18	25.0	18	69	16	202	30	13	11	44	1.79
50013035--50013468	17	25.0	17	70	13	190	30	13	11	44	1.79
50013035--50013178	55	2.6	54	79	5	166	29	13	11	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50013048--50013189	73	2.0	72	80	9	164	30	14	11	43	1.81
50013278--50013470	91	2.2	89	82	6	232	32	12	11	43	1.79
50025019--50025095	35	2.1	37	95	4	140	38	15	19	25	1.91
50025266--50025947	72	9.4	72	89	3	1014	30	15	19	34	1.93
50025266--50025947	217	3.1	215	90	2	1062	30	15	19	34	1.93
50025266--50025947	145	4.7	144	93	1	1098	30	15	19	34	1.93
50025892--50026157	54	5.0	55	87	9	378	27	16	18	37	1.92
50026427--50026528	30	3.4	30	86	2	134	29	21	3	45	1.70
50027834--50027881	16	3.0	16	85	11	71	33	14	12	39	1.84
50027880--50027917	19	2.0	20	94	5	69	42	13	10	34	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170