genome.fa.s16.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  99  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30908352--30908399	26	1.9	25	84	16	64	45	0	2	52	1.12
30908514--30908702	61	3.1	59	66	17	154	43	2	6	47	1.42
30908567--30908618	15	3.6	15	80	12	56	44	0	1	53	1.11
30908440--30908739	120	2.5	122	89	7	452	43	3	4	49	1.39
30908696--30908737	15	2.7	16	82	14	52	45	0	2	52	1.13
30908687--30908728	15	2.9	15	82	10	52	47	0	0	52	1.00
30908671--30908948	151	1.8	151	96	0	511	47	3	3	46	1.35
30908834--30908868	18	2.0	17	88	5	52	45	0	0	54	0.99
30909104--30909139	16	2.2	16	100	0	72	38	36	0	25	1.56
30911185--30911246	18	3.4	18	86	4	90	27	17	3	51	1.61
30917989--30918107	60	2.0	60	96	0	220	36	16	8	37	1.79
30921447--30921648	101	2.0	101	85	0	269	27	13	21	36	1.92
30922335--30922491	42	3.7	41	76	15	135	31	21	18	28	1.97
30922340--30922513	85	2.0	85	82	4	208	30	23	18	27	1.98
30927712--30927764	21	2.5	21	75	3	52	37	41	1	18	1.62
30927819--30927888	26	2.8	25	86	6	88	34	42	4	18	1.70
30927773--30927965	108	1.8	103	90	5	305	43	29	1	25	1.64
30927926--30927965	22	1.9	20	85	10	53	40	37	0	22	1.54
30928056--30928088	14	2.3	15	94	5	59	36	33	0	30	1.58
30928700--30928899	41	4.9	41	87	4	278	32	26	22	19	1.97
30928936--30929087	40	3.8	40	76	6	132	23	22	19	35	1.96
30929076--30929101	12	2.2	12	100	0	52	46	30	15	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30934160--30934248	30	3.0	28	80	9	88	28	21	25	24	1.99
30934187--30934271	28	3.0	28	85	3	98	31	21	22	24	1.98
30934387--30934455	26	2.7	26	93	0	120	37	23	21	17	1.94
30934667--30934726	27	2.2	27	82	5	68	21	16	21	40	1.92
30934675--30934921	27	9.4	27	78	10	217	23	13	17	44	1.85
30934675--30934921	81	3.1	81	82	5	240	23	13	17	44	1.85
30934859--30934899	21	2.0	21	95	0	73	24	17	12	46	1.82
30938505--30938801	50	5.8	50	82	3	319	22	28	21	26	1.99
30946540--30946569	13	2.3	13	94	0	51	23	6	10	60	1.52
30947449--30947758	157	2.0	157	94	0	539	47	5	3	44	1.42
30947888--30947955	16	4.2	16	92	0	100	39	30	0	29	1.57
30950997--30951053	26	2.2	25	79	14	62	56	7	3	33	1.43
30957552--30957585	12	2.9	12	95	4	61	35	0	0	64	0.94
30957690--30957751	30	2.1	30	88	11	92	58	9	4	27	1.50
30963746--30963920	73	2.4	73	84	2	217	24	22	25	28	2.00
30963659--30964031	188	2.0	186	87	4	545	24	21	26	27	1.99
30963819--30964310	115	4.3	115	88	2	693	25	20	26	27	1.99
30963819--30964304	229	2.1	230	87	1	690	24	20	27	27	1.99
30964398--30964424	14	1.9	14	100	0	54	25	0	37	37	1.57
30964423--30964515	21	4.3	22	78	6	100	26	1	36	35	1.64
30964423--30964481	14	4.0	15	76	10	68	27	0	38	33	1.57
30965323--30965359	19	2.0	19	89	5	58	72	0	0	27	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30965294--30965503	101	2.0	104	82	6	259	50	12	10	26	1.72
30965216--30965724	252	2.0	252	87	6	728	47	12	12	26	1.79
30968467--30968507	21	2.0	21	90	0	64	19	29	21	29	1.98
30971556--30971603	22	2.2	22	100	0	96	20	16	16	45	1.85
30972884--30972966	42	2.0	42	83	9	107	43	3	0	53	1.18
30972938--30972983	20	2.4	19	85	3	56	47	2	0	50	1.13
30972955--30973017	20	3.2	20	81	4	65	44	11	0	44	1.39
30972981--30973290	9	35.9	9	68	17	158	46	18	1	33	1.61
30972968--30973028	20	3.1	20	83	6	72	49	14	0	36	1.44
30972989--30973243	25	10.6	25	70	14	101	47	18	1	31	1.60
30973043--30973107	34	1.9	34	90	0	103	50	18	0	30	1.47
30973180--30973290	16	6.7	16	75	10	50	45	19	1	33	1.61
30973160--30973277	41	2.9	40	82	5	112	45	20	2	31	1.64
30973157--30973286	66	2.0	66	89	3	199	45	20	2	31	1.64
30973223--30973286	25	2.5	26	82	5	87	43	20	1	34	1.61
30980273--30980390	57	2.1	57	93	3	202	25	28	13	32	1.94
30986784--30986825	21	2.0	20	86	4	57	14	7	26	52	1.67
30987122--30987165	22	2.0	22	81	4	52	4	27	2	65	1.23
30997635--30997712	29	2.7	29	82	9	79	41	0	3	55	1.18
30997671--30997718	14	3.1	17	72	22	52	37	0	4	58	1.18
30997663--30997718	29	1.9	29	89	7	87	39	0	3	57	1.16
31004149--31004203	23	2.4	23	77	14	60	58	5	1	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31009649--31009764	45	2.6	45	81	0	133	25	16	25	32	1.96
31011349--31011403	22	2.6	21	73	18	51	32	3	21	41	1.71
31012068--31012120	23	2.3	23	93	0	88	45	3	9	41	1.54
31012076--31012122	23	2.0	23	100	0	94	44	4	8	42	1.54
31012940--31012970	14	2.2	14	100	0	62	32	12	0	54	1.38
31013293--31013327	18	1.9	18	94	0	61	37	17	37	8	1.80
31013879--31013938	14	4.4	14	78	4	59	46	35	0	18	1.49
31013887--31013938	7	7.6	7	76	4	52	46	36	0	17	1.48
31013888--31013938	20	2.5	20	80	3	57	47	37	0	15	1.46
31014101--31014147	21	2.2	21	88	0	67	48	36	0	14	1.44
31014109--31014152	14	3.1	14	80	0	52	50	31	0	18	1.47
31014568--31014679	40	2.8	40	78	5	127	25	24	20	29	1.99
31014737--31014854	40	3.0	40	83	0	146	28	22	16	31	1.96
31014303--31014833	151	3.5	155	79	5	610	29	23	16	31	1.96
31015139--31015185	24	2.0	24	86	0	67	46	23	0	29	1.52
31019196--31019243	22	2.3	21	85	7	62	27	4	8	60	1.44
31020772--31020804	5	6.6	5	90	10	50	15	3	0	81	0.80
31028403--31028446	18	2.4	18	88	3	61	54	0	2	43	1.12
31032774--31032830	26	2.2	26	90	0	87	21	12	29	36	1.90
31035802--31035831	14	2.2	14	94	5	53	33	0	16	50	1.46
31041451--31041479	12	2.4	12	100	0	58	6	24	41	27	1.80
31047821--31047863	19	2.2	20	87	4	61	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31051212--31051290	27	2.9	27	76	10	81	27	25	17	29	1.98
31052076--31052137	3	21.0	3	83	3	81	70	0	29	0	0.87
31054116--31054146	9	3.3	9	95	4	53	41	0	0	58	0.98
31059565--31059752	27	6.9	27	81	4	191	21	16	19	42	1.89
31059563--31059765	82	2.5	81	82	5	230	22	16	18	42	1.89
31067633--31067918	43	6.7	42	82	3	331	26	29	18	25	1.98
31067633--31067920	128	2.2	129	84	3	368	27	29	18	25	1.98
31072698--31072767	21	3.3	21	73	13	63	35	34	0	30	1.58
31072685--31072799	14	8.1	15	74	15	57	37	33	0	29	1.58
31072974--31073015	21	2.0	20	86	4	57	50	30	0	19	1.48
31073324--31073569	41	6.0	41	93	0	402	31	27	20	20	1.98
31073611--31073726	40	2.9	39	87	7	164	24	23	20	31	1.98
31074010--31074048	14	2.8	14	84	0	51	35	12	23	28	1.91
31074613--31074720	39	2.8	37	73	23	96	57	0	0	42	0.98
31077508--31077543	18	2.1	17	94	5	63	33	0	2	63	1.08
31078197--31078243	10	4.6	10	80	12	51	27	6	4	61	1.39
31082312--31082380	27	2.6	27	83	4	77	40	15	23	20	1.91
31086913--31086976	3	21.3	3	86	0	92	3	29	0	67	1.06
31092389--31092467	39	2.0	39	100	0	158	54	15	7	22	1.66
31094267--31094318	15	3.2	15	73	19	50	44	0	1	53	1.11
31094351--31094387	16	2.3	16	86	13	58	40	0	0	59	0.97
31094399--31094440	20	2.0	22	86	9	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31095068--31095095	14	2.0	14	100	0	56	50	0	21	28	1.49
31104553--31104594	14	3.1	13	78	21	50	59	4	0	35	1.19
31104561--31104598	16	2.4	16	82	4	51	60	5	0	34	1.19
31104795--31104841	16	2.8	16	78	12	51	59	4	4	31	1.36
31104858--31104919	3	20.7	3	89	0	70	59	3	6	30	1.38
31106274--31106434	50	3.2	49	75	5	153	24	21	22	31	1.98
31106532--31106654	44	2.8	44	87	2	176	26	22	21	28	1.99
31107101--31107347	120	2.0	125	87	7	360	27	23	17	31	1.97
31108564--31108614	8	7.0	7	82	13	59	13	15	0	70	1.17
31108564--31108615	7	7.0	8	82	14	51	13	15	0	71	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170