genome.fa.s16.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  155  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46102476--46102641	43	3.8	44	82	7	189	26	16	24	31	1.97
46105242--46105413	17	9.8	16	71	18	85	45	11	12	29	1.78
46105454--46105668	35	6.1	34	73	16	127	41	12	15	30	1.83
46105240--46105671	18	25.0	18	70	14	216	44	11	13	30	1.79
46105734--46105778	9	5.0	9	94	0	81	13	0	0	86	0.57
46105770--46105808	19	2.0	20	90	10	62	33	10	10	46	1.72
46105807--46105854	15	3.0	16	80	19	64	41	12	14	31	1.83
46105910--46105957	17	2.7	18	76	23	57	41	10	16	31	1.82
46106545--46106600	24	2.3	25	90	6	96	1	23	8	66	1.30
46106587--46106624	16	2.5	15	87	8	51	0	7	13	78	0.94
46107148--46107250	30	3.4	30	83	4	127	43	3	22	30	1.71
46107246--46107282	15	2.4	16	90	4	58	24	0	2	72	0.97
46107524--46107688	55	3.0	54	87	7	244	36	18	16	28	1.92
46107635--46107901	72	3.7	72	93	3	448	34	18	16	30	1.93
46107780--46108023	122	2.0	125	87	4	361	36	18	14	30	1.90
46107905--46109680	72	24.7	72	94	2	2950	33	18	16	31	1.93
46121585--46122014	17	25.0	16	68	17	93	44	11	13	29	1.79
46121583--46122014	18	25.0	18	71	15	218	44	11	13	30	1.79
46122077--46122124	21	2.3	21	82	10	64	14	0	4	81	0.84
46122077--46122121	9	5.0	9	91	0	63	15	0	2	82	0.77
46122115--46122153	20	1.9	21	94	5	71	30	10	12	46	1.75
46122152--46122199	15	3.0	16	80	19	64	41	12	14	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46122254--46122301	17	2.7	18	76	23	57	41	10	16	31	1.82
46122886--46122932	24	2.0	24	95	0	85	2	23	4	70	1.16
46123472--46123588	30	3.9	29	77	11	94	44	3	22	29	1.69
46123487--46123588	30	3.4	30	84	2	134	44	3	22	29	1.71
46123587--46123619	14	2.3	15	89	5	50	21	0	3	75	0.93
46123729--46123983	114	2.3	112	88	4	361	33	37	4	24	1.76
46125565--46125619	3	18.3	3	88	0	83	29	1	3	65	1.20
46125773--46125802	13	2.3	13	94	0	51	33	3	3	60	1.30
46125863--46125904	18	2.3	18	87	0	57	38	4	2	54	1.34
46128376--46128566	105	1.9	101	85	6	267	27	25	15	31	1.96
46131981--46132019	17	2.3	17	90	0	60	35	2	17	43	1.63
46133482--46133527	24	1.9	24	86	0	65	54	2	2	41	1.25
46133475--46133552	22	3.7	21	74	15	63	56	2	3	37	1.31
46133610--46133650	18	2.3	18	87	4	57	56	0	7	36	1.27
46138417--46138519	51	2.0	51	100	0	206	45	17	7	29	1.76
46138512--46138608	33	2.9	33	98	0	185	42	17	7	32	1.77
46138466--46138608	66	2.2	66	87	7	202	42	16	7	32	1.77
46141654--46141735	26	3.0	27	75	12	87	43	1	2	52	1.22
46141789--46141830	18	2.6	16	82	17	52	45	0	0	54	0.99
46141700--46141960	118	2.2	118	86	8	388	45	1	5	48	1.33
46141789--46141823	18	2.0	18	88	5	54	45	0	0	54	0.99
46141907--46141954	15	2.9	18	79	17	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46141920--46141960	15	2.7	15	82	17	50	48	0	2	48	1.14
46141896--46142209	156	2.0	156	96	0	585	48	5	3	42	1.43
46142062--46142096	18	2.0	17	88	5	52	45	0	0	54	0.99
46142332--46142367	16	2.2	16	100	0	72	38	36	0	25	1.56
46165622--46165743	23	5.3	23	86	3	174	29	23	21	25	1.99
46165622--46165743	46	2.7	46	93	0	199	29	23	21	25	1.99
46166808--46166847	21	1.9	21	89	0	62	42	12	2	42	1.56
46166807--46166857	21	2.3	23	80	10	61	39	11	3	45	1.59
46169766--46169864	40	2.5	40	79	4	114	30	26	17	26	1.97
46170037--46170089	19	2.7	19	72	13	54	52	11	0	35	1.37
46170775--46170840	10	6.3	10	76	15	62	3	16	3	77	1.02
46170862--46170886	13	1.9	13	100	0	50	24	0	0	76	0.80
46175083--46175667	99	5.9	99	91	0	929	29	21	24	24	1.99
46175136--46175694	50	11.3	51	62	12	205	29	20	24	25	1.99
46177244--46177275	15	2.0	17	88	11	50	34	0	9	56	1.32
46181266--46181325	20	3.0	20	97	0	111	30	23	15	31	1.95
46186861--46187456	99	6.0	99	91	1	935	29	20	24	25	1.99
46186914--46187472	50	11.3	50	63	9	239	29	20	24	25	1.99
46188215--46188262	12	4.0	11	84	13	51	4	10	4	81	0.97
46189110--46189141	15	2.0	17	88	11	50	34	0	9	56	1.32
46190611--46190682	36	2.0	36	83	5	92	44	0	25	30	1.54
46190882--46190991	23	5.0	22	80	5	118	19	20	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46190884--46190991	44	2.5	43	80	8	130	17	21	25	36	1.95
46191168--46191198	6	5.2	6	96	0	53	54	0	16	29	1.42
46192026--46192094	34	2.0	34	94	0	120	33	31	17	17	1.93
46194019--46194057	18	2.2	17	86	13	53	33	0	20	46	1.51
46194283--46194380	23	4.3	23	90	2	162	20	21	26	31	1.98
46194285--46194373	45	2.0	45	95	0	160	19	22	26	31	1.97
46198054--46198169	57	2.0	58	89	1	180	46	10	5	37	1.60
46200349--46200375	6	4.5	6	100	0	54	51	0	48	0	1.00
46205183--46205234	27	2.0	25	88	7	77	40	0	11	48	1.40
46205297--46205351	26	2.1	27	82	3	67	63	5	5	25	1.38
46206928--46206971	19	2.4	18	85	11	54	50	0	4	45	1.22
46207186--46207256	26	2.5	31	78	17	73	50	14	15	19	1.77
46209064--46209096	4	8.2	4	93	0	57	45	27	3	24	1.68
46214268--46214318	24	2.1	24	100	0	102	35	23	7	33	1.84
46217688--46217721	17	2.0	17	94	0	59	44	5	0	50	1.26
46217688--46217726	17	2.4	16	87	8	53	43	5	0	51	1.24
46217692--46217731	17	2.3	18	83	12	57	47	5	0	47	1.24
46217811--46217862	15	3.6	15	80	12	56	44	0	1	53	1.11
46217687--46217978	120	2.4	120	91	5	459	41	2	5	50	1.40
46217760--46217943	59	3.1	59	65	21	148	41	2	7	49	1.42
46217940--46217981	15	2.7	16	82	14	52	45	0	2	52	1.13
46217931--46217972	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46217915--46218228	154	2.0	156	95	1	569	46	5	3	44	1.41
46218081--46218115	18	2.0	17	88	5	52	45	0	0	54	0.99
46217916--46218151	75	3.1	75	65	16	203	46	2	3	47	1.34
46218348--46218386	16	2.4	16	86	0	51	28	33	2	35	1.71
46218361--46218417	16	3.6	16	95	0	87	33	36	0	29	1.58
46225430--46225472	17	2.4	18	80	7	52	48	2	2	46	1.27
46232649--46232699	15	3.5	15	81	13	70	60	0	9	29	1.28
46233948--46233989	8	4.9	8	86	13	57	80	2	2	14	0.90
46237514--46237551	20	1.9	19	89	5	58	36	7	7	47	1.62
46241238--46241282	21	2.1	21	95	0	81	33	8	35	22	1.85
46244802--46244842	21	2.0	21	90	0	64	19	29	21	29	1.98
46249868--46249898	5	6.2	5	100	0	62	61	0	0	38	0.96
46249893--46249954	30	2.1	31	82	11	76	38	0	8	53	1.31
46261905--46261945	20	2.0	20	85	4	55	48	12	19	19	1.80
46273612--46273662	21	2.5	20	72	12	50	47	17	5	29	1.71
46278263--46278448	93	2.0	93	100	0	372	25	8	29	36	1.86
46282776--46282834	25	2.3	25	82	8	66	30	0	3	66	1.08
46282799--46282856	26	2.3	26	82	11	75	27	1	1	68	1.08
46282800--46282855	25	2.2	26	87	6	78	25	1	1	71	1.05
46286351--46286376	2	13.0	2	100	0	52	50	0	0	50	1.00
46288159--46288209	15	3.3	15	81	8	57	52	13	1	31	1.51
46296434--46296500	28	2.4	28	94	0	116	34	22	11	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46297661--46297733	38	1.9	38	97	0	137	35	28	10	24	1.90
46298030--46298082	21	2.6	21	82	14	58	66	0	7	26	1.18
46299544--46299691	67	2.2	68	84	6	183	53	1	6	38	1.36
46299831--46299871	20	2.0	20	86	9	57	43	9	2	43	1.50
46312864--46312891	12	2.3	12	100	0	56	46	17	21	14	1.84
46313786--46313859	16	4.6	16	67	21	55	21	0	14	63	1.30
46315485--46315518	14	2.4	14	95	0	59	35	17	5	41	1.74
46316722--46316873	62	2.5	62	96	0	286	47	11	5	34	1.65
46322133--46322169	18	2.1	18	94	0	65	0	24	2	72	0.97
46343291--46343316	2	13.0	2	100	0	52	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170