genome.fa.s16.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  27  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7118827--7118900	29	2.5	29	78	14	80	47	12	13	27	1.78
7121425--7121513	27	3.1	27	72	12	88	59	8	10	21	1.57
7121425--7121536	58	1.9	58	85	0	152	57	7	9	25	1.57
7133297--7133344	24	2.0	24	84	8	62	22	14	29	33	1.94
7136934--7137022	29	3.1	28	79	9	83	37	31	5	25	1.79
7136948--7136994	21	2.1	23	88	7	71	36	29	6	27	1.82
7139333--7139463	64	2.1	64	94	1	228	28	7	9	54	1.61
7139465--7139542	28	2.7	30	78	11	90	46	10	14	29	1.77
7149038--7149484	222	2.0	222	98	0	867	31	25	15	27	1.96
7152812--7152846	16	2.2	16	100	0	70	22	17	17	42	1.88
7157468--7158884	132	10.8	132	89	2	1919	28	19	24	27	1.98
7158093--7158816	44	16.5	44	65	10	253	29	18	24	27	1.98
7165457--7165490	18	1.9	18	88	5	52	79	0	14	5	0.91
7167129--7167219	47	1.9	47	93	0	155	39	24	6	29	1.80
7183343--7183397	25	2.2	25	80	0	65	21	23	20	34	1.97
7189847--7189910	33	1.9	33	90	0	101	43	4	0	51	1.22
7191084--7191137	28	1.9	28	84	0	72	33	14	3	48	1.62
7199701--7199747	25	1.9	24	82	4	58	48	12	2	36	1.53
7206103--7206197	41	2.3	41	89	3	138	49	13	6	30	1.67
7209513--7209557	23	2.0	23	82	8	56	33	4	11	51	1.58
7210159--7210373	42	5.2	42	86	2	267	28	19	24	27	1.98
7213208--7213248	19	2.2	19	100	0	82	43	14	4	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7217346--7217384	15	2.6	15	79	0	51	2	53	0	43	1.14
7221947--7221986	20	2.0	20	90	0	62	27	10	12	50	1.72
7221932--7221998	34	1.9	35	90	3	109	31	8	13	46	1.74
7221926--7222002	14	5.0	15	71	20	52	33	9	14	42	1.77
7222624--7222662	18	2.2	18	100	0	78	46	10	0	43	1.37
7223297--7223323	13	2.1	13	100	0	54	55	14	7	22	1.64
7223696--7223753	22	2.7	21	82	10	80	44	18	3	32	1.67
7225388--7225427	19	2.1	19	90	0	62	47	5	45	2	1.38
7225886--7225938	14	3.6	14	76	18	54	71	1	26	0	0.96
7226931--7226981	23	2.2	23	89	6	77	41	19	11	27	1.86
7231933--7231971	5	7.8	5	83	11	53	79	2	0	17	0.84
7236920--7237197	144	1.9	143	83	3	353	36	20	20	22	1.95
7238641--7238810	45	3.8	45	84	0	216	25	14	25	34	1.94
7248491--7248567	33	2.3	33	80	10	86	33	20	22	23	1.97
7249068--7249271	101	2.0	101	99	0	399	31	4	23	40	1.76
7260115--7260271	37	4.2	37	88	0	188	34	25	19	21	1.96
7260912--7260959	25	2.0	23	84	8	60	64	14	0	20	1.28
7262265--7262331	19	3.3	19	67	25	55	70	1	23	4	1.14
7262263--7262335	24	3.2	24	74	18	93	71	1	23	4	1.11
7262252--7262340	43	2.1	43	97	0	169	69	2	22	5	1.20
7262747--7262788	20	2.1	20	86	0	57	59	0	9	30	1.29
7264724--7264760	15	2.6	14	87	8	56	45	10	5	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7272099--7272163	30	2.2	30	84	10	82	50	0	3	46	1.17
7272599--7272644	24	1.9	24	100	0	92	21	10	21	45	1.82
7272992--7273085	46	2.0	46	85	6	127	30	7	24	37	1.83
7274500--7274548	18	2.8	17	84	6	62	24	12	16	46	1.81
7277881--7277974	45	2.1	45	80	4	100	31	6	25	36	1.81
7278763--7278842	42	1.9	42	86	0	115	20	28	36	15	1.92
7278709--7278905	104	1.9	104	86	0	277	23	22	29	23	1.99
7285080--7285408	104	3.3	101	75	11	284	24	21	29	23	1.99
7285196--7285368	92	1.9	92	90	0	274	23	23	28	24	1.99
7294166--7294194	14	2.1	14	100	0	58	41	13	13	31	1.84
7294317--7294370	19	2.7	20	83	11	58	61	5	0	33	1.19
7294318--7294406	20	4.2	20	74	23	76	59	2	1	37	1.17
7294377--7294415	20	2.0	20	89	0	60	61	2	0	35	1.10
7296070--7296113	18	2.4	19	81	7	56	36	0	4	59	1.18
7297670--7297699	14	2.1	14	100	0	60	30	26	16	26	1.97
7300094--7300189	42	2.3	42	85	1	122	30	19	20	29	1.97
7309602--7309748	41	3.6	41	80	5	145	29	19	23	27	1.98
7317526--7317561	17	2.1	18	89	5	56	50	5	22	22	1.70
7324947--7325001	22	2.5	22	80	11	60	32	9	3	54	1.49
7327486--7327757	43	6.3	43	83	1	323	23	20	26	29	1.99
7329169--7329214	17	2.7	17	96	0	83	10	13	34	41	1.79
7335739--7335985	46	5.5	46	92	2	394	27	22	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7335739--7335985	91	2.7	91	92	1	408	27	22	16	34	1.95
7335739--7335985	137	1.8	134	91	2	404	27	22	16	34	1.95
7345683--7345766	41	2.0	41	100	0	168	25	21	16	36	1.94
7345915--7346024	46	2.5	46	89	4	163	27	25	13	33	1.93
7352572--7352613	12	3.7	12	81	12	61	47	0	4	47	1.23
7352569--7352618	22	2.3	22	96	0	91	46	0	4	50	1.20
7360617--7360668	22	2.4	22	83	6	61	23	21	25	30	1.99
7373068--7373138	29	2.6	26	79	12	88	29	25	18	26	1.98
7373204--7373282	22	3.5	22	75	3	77	21	31	24	22	1.98
7374396--7374594	100	2.0	100	94	0	353	39	19	9	32	1.84
7393812--7393861	22	2.3	22	79	6	57	56	12	16	16	1.68
7397214--7397254	22	1.9	21	85	5	55	19	2	4	73	1.13
7405084--7405253	54	3.1	54	82	0	205	28	24	27	20	1.99
7406888--7407024	74	1.9	73	89	3	213	34	24	2	37	1.71
7423021--7423180	42	3.8	42	78	0	167	24	14	18	42	1.88
7434057--7434091	17	2.1	17	88	0	52	25	11	8	54	1.64
7435268--7435438	47	3.6	47	92	3	256	45	10	19	25	1.82
7435268--7435459	47	4.1	47	86	4	145	45	9	20	23	1.80
7442229--7442289	28	2.2	28	93	0	104	31	21	16	31	1.95
7442229--7442303	28	2.7	28	85	4	80	33	18	16	32	1.93
7442530--7442571	22	1.9	22	85	9	59	30	2	23	42	1.67
7450937--7450987	12	4.1	12	72	18	50	45	1	1	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7450942--7450983	21	2.0	21	85	0	57	42	2	2	52	1.27
7453213--7453260	11	4.3	11	81	5	51	64	2	0	33	1.05
7466397--7466474	40	2.0	40	87	5	115	50	2	20	26	1.61
7468468--7468518	25	2.0	25	85	7	68	21	37	0	41	1.54
7469634--7469673	14	2.9	14	84	0	53	40	10	17	32	1.83
7479315--7479355	21	2.0	21	100	0	82	34	0	9	56	1.32
7479318--7479633	59	5.3	59	70	13	252	41	1	5	50	1.35
7479330--7479681	120	2.9	120	93	1	589	42	1	5	50	1.34
7479518--7479563	16	2.9	16	78	12	51	45	0	2	52	1.13
7479385--7479419	18	2.0	17	94	5	61	40	0	0	60	0.97
7479823--7479913	45	2.0	44	89	6	139	34	28	5	31	1.80
7479892--7479945	16	3.4	16	84	0	72	27	35	3	33	1.75
7483519--7483547	14	2.1	14	100	0	58	37	34	13	13	1.85
7484509--7484536	14	2.0	14	100	0	56	42	7	14	35	1.73
7485848--7485911	33	1.9	33	87	0	92	65	0	10	23	1.24
7488102--7488713	84	7.3	84	93	0	998	35	25	16	22	1.95
7490334--7490371	20	1.9	19	89	5	58	63	2	2	31	1.22
7491878--7491940	30	2.1	30	84	0	81	42	4	12	39	1.64
7494137--7494180	22	2.0	22	81	4	52	36	2	6	54	1.40
7500223--7500286	27	2.4	27	97	0	119	42	10	0	46	1.39
7500343--7500419	27	2.9	27	96	0	136	24	22	32	20	1.98
7500731--7500794	19	3.4	19	78	4	85	37	9	1	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7500807--7500957	82	1.8	82	100	0	302	43	9	5	41	1.60
7501026--7501121	19	5.2	19	81	5	124	50	0	12	37	1.41
7501026--7501121	37	2.6	37	96	0	174	50	0	12	37	1.41
7501796--7501858	26	2.4	26	94	2	108	49	0	9	41	1.35
7509820--7509936	43	2.6	44	77	10	112	53	3	5	36	1.42
7517778--7517870	46	2.0	46	97	0	177	44	3	21	31	1.68
7538982--7539125	61	2.3	61	81	1	162	25	18	29	26	1.98
7542441--7542472	14	2.3	14	94	0	55	31	6	18	43	1.75
7545515--7545851	27	12.5	27	80	2	320	19	16	20	42	1.89
7545515--7545851	81	4.2	80	81	7	362	19	16	20	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170