Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  170  of  170  ( 20315 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50848424--50848485
32
1.9
32
96
0
115
27
32
6
33
1.82
50858984--50859028
2
22.5
2
100
0
90
0
48
0
51
1.00
50862434--50862479
24
1.9
24
95
0
83
36
8
8
45
1.66
50862433--50862485
24
2.2
24
86
0
79
35
7
7
49
1.60
50870328--50870388
27
2.3
27
97
0
113
36
18
14
31
1.91
50871302--50871337
18
1.9
19
88
5
56
19
2
13
63
1.41
50873740--50873833
45
2.1
45
89
0
143
27
17
14
40
1.89
50873903--50873953
25
2.0
25
100
0
102
23
19
27
29
1.98
50878912--50878936
13
1.9
13
100
0
50
16
12
0
72
1.13
50885273--50885341
29
2.3
29
85
5
84
47
15
14
21
1.81
50887199--50887469
147
1.8
147
89
1
427
44
15
28
11
1.81
50889098--50889151
6
9.0
6
89
0
63
44
0
55
0
0.99
50889098--50889151
14
3.9
14
85
0
63
44
0
55
0
0.99
50889101--50889151
20
2.5
20
93
0
84
43
0
56
0
0.99
50897062--50897108
21
2.2
21
84
0
58
0
23
6
70
1.10
50898319--50898433
34
3.4
34
84
4
135
43
0
18
37
1.56
50898535--50898925
126
3.1
126
84
4
492
38
16
16
28
1.90
50898554--50898891
124
2.7
125
87
3
468
41
15
16
26
1.88
50902834--50903496
46
14.6
46
96
1
1144
33
15
22
28
1.95
50905900--50906019
51
2.4
51
88
0
177
35
15
22
27
1.94
50909685--50909717
13
2.4
14
90
5
50
48
0
3
48
1.17
50916454--50916480
12
2.2
12
100
0
54
51
14
25
7
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50933234--50933285
4
13.0
4
100
0
104
50
25
0
25
1.50
50933413--50933445
3
11.0
3
100
0
66
66
0
33
0
0.92
50944686--50944896
77
2.7
77
90
0
350
31
25
19
24
1.98
50954352--50954385
15
2.3
15
89
0
50
38
0
0
61
0.96
50954326--50954386
27
2.2
29
80
14
74
34
1
1
62
1.15
50957196--50957458
132
2.0
132
95
0
472
29
20
18
31
1.96
50966394--50966422
14
2.1
14
100
0
58
48
37
0
13
1.43
50970375--50970418
23
1.9
23
90
9
72
22
22
25
29
1.99
50971085--50971124
21
1.9
21
100
0
80
5
15
30
50
1.65
50971149--50971210
31
2.0
31
90
0
97
19
37
17
25
1.94
50971200--50971262
32
1.9
33
87
3
92
15
26
26
30
1.96
50972572--50986338
7
1959.3
7
95
3
24265
13
0
43
43
1.45
50973151--50973256
44
2.4
44
85
0
131
16
3
37
41
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170

The End!