genome.fa.s16.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  125  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38155727--38155784	25	2.4	24	75	18	57	8	39	1	50	1.43
38157779--38157805	7	3.9	7	100	0	54	0	11	0	88	0.50
38157780--38157816	16	2.4	16	86	8	51	5	13	0	81	0.86
38158246--38158278	17	1.9	17	93	0	57	12	18	0	69	1.18
38158415--38158460	23	2.0	23	83	8	58	39	0	4	56	1.19
38158682--38158733	21	2.5	21	80	0	59	36	32	1	28	1.69
38160831--38160871	17	2.3	18	87	4	57	80	2	0	17	0.82
38166849--38166889	22	1.9	22	90	5	66	46	2	12	39	1.54
38167117--38167155	19	2.0	19	85	14	53	51	0	0	48	1.00
38173422--38173508	45	1.9	45	92	0	147	34	22	16	26	1.95
38173510--38173701	51	3.8	50	78	4	208	29	28	18	23	1.98
38173517--38173704	101	1.9	101	88	5	290	29	28	18	23	1.97
38175914--38175952	16	2.3	18	82	13	55	51	0	7	41	1.31
38179408--38179467	30	2.0	30	96	0	111	25	3	15	56	1.54
38183802--38183858	27	2.2	25	81	6	60	47	1	1	49	1.22
38183945--38184000	18	2.9	19	73	26	55	48	0	0	51	1.00
38184010--38184049	13	3.0	13	86	13	55	52	0	2	45	1.14
38184999--38185039	20	2.0	21	86	13	59	46	2	0	51	1.14
38188234--38188267	17	2.0	17	100	0	68	47	11	11	29	1.76
38189616--38189665	19	2.6	19	83	0	64	36	0	6	58	1.23
38190611--38190641	13	2.4	13	100	0	62	22	19	12	45	1.84
38191398--38191441	6	7.3	6	100	0	88	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38206174--38206296	60	2.0	60	95	0	219	31	21	13	32	1.93
38208287--38208364	38	2.1	38	97	0	147	20	16	26	35	1.94
38209192--38209248	29	2.0	29	82	6	71	57	0	1	40	1.09
38211172--38211248	14	5.0	15	71	20	52	42	14	9	33	1.77
38211188--38211227	20	2.0	20	90	0	62	50	12	10	27	1.72
38211176--38211242	34	1.9	35	90	3	109	46	13	8	31	1.74
38212140--38212171	16	1.9	17	93	6	57	50	0	6	43	1.27
38215102--38215513	133	3.1	134	80	8	480	33	15	21	29	1.93
38215862--38215914	21	2.6	20	79	5	61	20	3	37	37	1.71
38217752--38217792	17	2.3	18	87	4	57	53	7	4	34	1.50
38220298--38220330	17	1.9	17	93	0	57	39	3	6	51	1.42
38220339--38220377	15	2.6	16	88	8	55	43	0	5	51	1.24
38220596--38220674	21	3.8	21	83	5	97	40	13	6	39	1.71
38220501--38220741	116	2.1	116	96	1	448	42	12	5	38	1.67
38220710--38220982	9	29.8	9	76	4	260	47	17	2	32	1.62
38220736--38220990	100	2.5	99	89	2	368	49	16	1	31	1.57
38237928--38237960	12	2.8	12	86	13	50	6	42	24	27	1.78
38240671--38240703	15	2.2	15	100	0	66	63	0	6	30	1.18
38243806--38244083	50	5.7	50	70	9	205	23	26	21	28	1.99
38243815--38244077	100	2.7	97	85	5	356	23	26	21	28	1.99
38258592--38258621	13	2.3	13	94	0	51	30	6	6	56	1.51
38261457--38261544	26	3.4	25	76	6	95	46	1	3	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38262164--38262215	10	5.7	9	80	10	52	59	1	1	36	1.19
38262161--38262220	19	3.2	19	72	11	52	53	1	1	43	1.20
38263757--38263798	16	2.6	16	85	11	50	30	0	4	64	1.14
38264717--38264742	10	2.6	10	100	0	52	7	0	0	92	0.39
38266502--38266536	18	2.0	17	88	5	52	14	5	2	77	1.07
38272270--38272385	29	4.0	29	75	10	112	41	21	23	13	1.89
38274106--38274166	30	2.1	29	82	8	72	29	26	3	40	1.72
38274605--38274654	26	2.0	24	84	7	64	56	0	0	44	0.99
38274609--38274647	16	2.4	16	86	0	51	56	0	0	43	0.99
38282588--38282622	14	2.6	14	95	4	63	62	0	0	37	0.95
38292901--38292952	25	2.1	25	96	0	95	30	19	19	30	1.96
38297190--38297262	25	3.0	23	83	13	85	36	19	12	31	1.88
38297218--38297623	69	5.9	69	87	4	554	45	19	9	24	1.81
38297228--38297623	139	2.9	138	88	4	570	45	19	9	24	1.81
38297484--38297579	23	4.3	23	64	15	67	43	18	10	27	1.82
38297524--38297621	22	4.2	24	66	21	73	45	20	10	23	1.81
38298431--38298580	41	3.7	41	89	1	212	34	26	19	19	1.96
38298431--38298580	81	1.8	82	85	1	212	34	26	19	19	1.96
38299422--38299474	26	2.0	26	88	7	79	45	7	0	47	1.31
38306248--38306330	29	2.9	29	88	0	130	34	26	10	27	1.90
38317277--38317412	70	1.9	70	95	0	245	59	9	13	17	1.60
38321337--38321362	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38323099--38323148	19	2.6	19	84	9	57	26	2	24	48	1.62
38326794--38327590	402	2.0	402	92	3	1350	40	15	19	25	1.91
38328016--38328045	15	1.9	16	93	6	53	10	40	0	50	1.36
38337064--38337148	35	2.4	35	92	0	134	62	11	7	18	1.51
38337739--38337788	17	2.7	20	78	18	70	10	0	44	46	1.37
38342369--38342418	17	2.7	20	78	18	70	10	0	44	46	1.37
38353650--38353732	34	2.5	34	78	7	82	39	4	15	39	1.69
38353984--38354087	41	2.5	41	92	3	165	26	19	30	23	1.98
38363930--38364005	20	3.8	20	89	0	116	51	0	27	21	1.48
38363934--38364021	40	2.2	40	83	0	104	53	0	25	21	1.46
38366920--38366954	16	2.2	16	90	10	54	74	2	5	17	1.14
38368131--38368413	142	2.0	142	93	0	485	39	14	12	34	1.83
38369829--38369884	7	8.0	7	81	15	71	32	10	0	57	1.33
38369827--38369883	28	2.0	28	86	6	80	35	10	0	54	1.35
38372195--38372300	51	2.1	52	96	1	196	36	19	24	18	1.94
38378350--38378426	40	1.9	40	94	0	136	36	16	20	25	1.94
38390519--38390577	17	3.5	17	72	22	54	76	6	16	0	1.00
38395506--38395554	22	2.3	21	80	13	55	18	10	8	63	1.50
38396889--38396939	17	3.3	15	75	19	52	35	0	1	62	1.06
38398514--38398586	30	2.4	30	76	0	83	45	5	20	28	1.73
38398640--38398979	156	2.2	155	83	1	448	32	13	21	32	1.92
38401975--38402200	59	3.8	59	89	1	346	51	8	5	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38404497--38404602	40	2.7	40	76	2	115	20	25	31	22	1.98
38406757--38406833	34	2.3	34	79	4	84	15	9	23	51	1.71
38406676--38406961	107	2.7	107	92	0	464	25	7	23	44	1.79
38406878--38406936	23	2.6	22	86	13	84	18	8	20	52	1.71
38408111--38408199	37	2.4	37	92	0	151	42	14	7	34	1.75
38408414--38408479	33	2.0	33	96	0	123	42	16	6	34	1.73
38409431--38409509	24	3.3	24	98	0	149	13	21	36	27	1.92
38410053--38410079	11	2.5	11	100	0	54	22	7	18	51	1.70
38411504--38411542	16	2.5	15	84	12	51	41	0	0	58	0.98
38411691--38411879	59	3.2	58	67	11	166	42	2	4	50	1.35
38411680--38411977	120	2.5	120	93	1	490	42	2	5	50	1.37
38411801--38411835	18	2.0	17	88	5	52	45	0	0	54	0.99
38416332--38416468	60	2.3	60	90	0	211	24	15	32	27	1.95
38424995--38425051	29	2.0	29	85	0	78	26	12	28	33	1.92
38432468--38432527	18	3.4	17	79	9	57	31	3	3	61	1.28
38432925--38432954	8	3.9	8	95	4	53	86	0	0	13	0.57
38432968--38433004	7	5.6	7	90	6	51	81	0	0	18	0.70
38432968--38433001	13	2.5	13	85	4	50	79	0	0	20	0.73
38433514--38433551	20	2.0	20	89	5	60	39	0	0	60	0.97
38438473--38438502	15	1.9	16	93	6	53	26	0	0	73	0.84
38438596--38438682	41	2.1	42	81	12	110	32	1	4	62	1.23
38441889--38441928	20	2.0	20	100	0	80	25	30	10	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38448429--38448509	2	40.5	2	100	0	162	50	49	0	0	1.00
38450145--38450200	21	2.7	21	75	10	69	55	3	3	37	1.35
38450202--38450257	20	2.6	22	83	8	62	37	0	0	62	0.95
38450216--38450274	10	6.0	10	75	9	50	42	0	0	57	0.98
38450216--38450292	40	1.9	40	86	5	111	38	0	0	61	0.96
38450786--38450960	69	2.5	68	83	5	201	44	26	5	23	1.75
38456443--38456544	25	4.2	25	77	12	88	36	22	24	16	1.94
38459062--38459148	23	3.7	23	80	4	95	36	16	13	33	1.88
38465172--38465222	25	2.0	25	84	0	66	27	19	23	29	1.98
38466423--38466501	41	1.9	41	86	0	113	30	29	16	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170