genome.fa.s16.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  121  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36968412--36968564	80	1.9	80	87	2	227	26	20	25	27	1.99
36968556--36968713	50	3.2	50	70	7	149	27	15	21	34	1.94
36968312--36968662	180	1.9	179	84	4	456	27	19	22	31	1.97
36968499--36968742	100	2.4	100	90	0	389	26	18	22	33	1.96
36968492--36968729	50	4.8	49	67	12	142	26	17	22	33	1.96
36969025--36969861	88	9.6	88	87	2	965	21	24	24	29	1.99
36969099--36969237	44	3.2	44	62	11	104	20	22	28	28	1.98
36969231--36969369	44	3.2	44	64	4	118	23	24	25	26	2.00
36969025--36969861	263	3.2	262	85	2	1056	21	24	24	29	1.99
36969463--36969592	44	2.9	45	65	8	113	20	22	25	31	1.98
36969626--36969762	43	3.2	42	66	17	118	23	21	24	29	1.99
36971044--36971079	6	5.7	6	87	12	54	13	13	0	72	1.13
36971034--36971082	7	7.3	7	82	17	68	16	16	0	67	1.24
36971043--36971079	13	2.8	13	100	0	74	13	13	0	72	1.11
36971034--36971082	20	2.5	19	90	6	71	16	16	0	67	1.24
36971917--36971961	14	3.1	14	80	6	54	4	17	0	77	0.92
36974617--36974646	15	2.0	15	93	0	51	50	6	20	23	1.71
36977420--36977547	64	2.0	64	96	0	238	40	21	15	21	1.91
36979013--36979037	13	1.9	13	100	0	50	64	8	0	28	1.22
36980085--36980189	29	3.6	29	85	5	133	46	8	25	19	1.78
36980143--36980231	28	3.1	28	77	4	90	41	8	24	24	1.84
36980597--36980623	5	5.4	5	100	0	54	18	0	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36987654--36987752	23	4.3	23	78	5	110	33	23	18	25	1.97
37006965--37007100	24	5.6	24	79	6	123	32	19	27	20	1.97
37006997--37007100	48	2.1	50	87	3	149	33	17	29	19	1.94
37011791--37011854	25	2.6	25	78	14	69	57	1	1	39	1.17
37012363--37012406	23	1.9	23	95	0	79	68	9	11	11	1.40
37016367--37016459	26	3.6	26	80	2	107	21	18	24	35	1.95
37023980--37024077	26	3.8	26	84	6	119	22	19	23	34	1.96
37029306--37029347	20	2.1	20	86	0	57	11	33	33	21	1.90
37046975--37047264	123	2.3	124	92	1	485	28	16	22	32	1.96
37049523--37049639	23	4.9	23	85	13	155	33	0	24	41	1.55
37049579--37050019	29	15.3	29	92	1	708	30	0	26	42	1.58
37049523--37049668	23	5.9	23	75	19	123	33	0	24	41	1.55
37049578--37050019	144	3.1	144	92	1	733	30	0	26	42	1.58
37050023--37050080	26	2.2	25	80	14	64	44	10	3	41	1.55
37052349--37052383	10	3.5	10	84	0	52	74	0	0	25	0.82
37052437--37052487	22	2.3	21	83	9	66	35	0	35	29	1.58
37052440--37052538	52	1.9	52	93	0	171	38	0	33	28	1.57
37052492--37052538	22	2.1	22	96	0	85	40	0	34	25	1.56
37058185--37058213	14	2.1	14	100	0	58	34	13	13	37	1.85
37061015--37061058	22	2.0	21	86	4	61	40	6	11	40	1.68
37062999--37063193	41	4.8	41	89	5	279	23	21	27	28	1.99
37062999--37063188	81	2.3	83	87	4	271	23	20	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37068167--37068374	43	4.9	43	81	2	231	24	15	30	29	1.96
37068528--37068570	22	2.0	22	95	0	77	41	23	20	13	1.88
37069179--37069230	18	2.7	20	74	17	56	59	0	3	36	1.16
37069320--37069359	20	2.0	20	90	0	62	55	10	5	30	1.54
37076763--37076796	16	2.2	15	89	5	50	44	0	0	55	0.99
37078368--37078394	3	9.0	3	100	0	54	66	0	33	0	0.92
37090139--37090401	51	5.2	51	88	4	345	32	15	23	28	1.95
37105976--37106009	17	2.1	16	88	5	50	8	0	17	73	1.08
37113710--37114101	46	8.6	46	93	0	619	32	15	20	30	1.94
37115362--37115551	49	3.9	48	84	5	222	28	13	24	33	1.94
37119399--37119928	46	11.6	46	94	0	859	32	15	21	30	1.94
37139412--37139460	26	2.0	24	84	8	62	61	2	0	36	1.08
37150488--37150557	16	4.2	17	71	25	51	50	0	27	22	1.50
37150853--37150889	9	4.1	9	92	0	65	29	10	13	45	1.77
37152214--37152269	29	1.9	29	88	0	85	39	5	17	37	1.73
37153225--37153251	14	1.9	14	100	0	54	59	3	0	37	1.15
37154412--37154457	20	2.2	21	92	3	76	63	4	10	21	1.44
37154525--37154553	5	5.8	5	100	0	58	82	0	17	0	0.66
37156387--37156438	24	2.2	24	89	0	77	55	9	1	32	1.43
37158356--37158407	24	2.2	24	89	0	77	55	9	1	32	1.43
37164044--37164120	29	2.7	27	74	16	68	9	7	14	68	1.37
37168192--37168299	43	2.6	41	77	18	109	28	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37173733--37173817	42	2.0	42	93	2	143	41	23	8	27	1.83
37203493--37203546	22	2.3	24	78	15	60	35	3	7	53	1.47
37209529--37209562	18	1.9	18	88	5	52	20	29	38	11	1.88
37215918--37215969	22	2.5	22	84	12	65	61	1	0	36	1.07
37215922--37216019	21	4.9	20	70	21	55	62	5	0	32	1.17
37215992--37216021	11	2.6	11	94	5	51	73	0	0	26	0.84
37218835--37218863	3	9.7	3	100	0	58	31	0	0	68	0.89
37219552--37219637	44	2.0	44	92	0	145	40	11	17	30	1.85
37220676--37220721	19	2.5	19	80	20	53	60	4	0	34	1.16
37220676--37220759	23	3.9	22	74	11	68	55	2	0	41	1.12
37227028--37227086	26	2.3	25	80	8	64	45	13	11	28	1.79
37234058--37234102	17	2.7	18	73	13	51	8	17	4	68	1.32
37235302--37235351	14	3.7	14	70	20	52	38	14	4	44	1.63
37235307--37235363	26	2.2	26	100	0	114	38	12	7	42	1.70
37262747--37262798	24	2.2	24	96	0	95	28	3	46	21	1.69
37268440--37268733	45	6.7	45	78	6	282	26	25	19	29	1.98
37268430--37268733	87	3.5	86	78	8	308	26	25	18	29	1.98
37268440--37268679	132	1.8	132	92	0	408	26	25	19	28	1.99
37269930--37269954	9	2.8	9	100	0	50	8	0	8	84	0.79
37273247--37273291	19	2.3	20	85	7	58	37	11	24	26	1.89
37275249--37275294	11	4.2	11	78	10	58	17	32	2	47	1.60
37275272--37275370	50	2.0	50	88	6	146	25	26	2	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37275247--37275357	11	10.6	10	69	25	54	22	28	1	46	1.62
37279059--37279200	57	2.4	59	87	11	202	28	21	27	23	1.99
37279327--37279452	66	1.9	66	96	0	234	19	17	36	26	1.94
37280239--37280280	18	2.3	18	87	0	57	19	28	7	45	1.76
37281310--37281383	38	2.0	38	86	7	107	32	4	0	63	1.13
37284105--37284137	7	4.6	7	96	3	57	42	30	12	15	1.83
37285503--37285536	17	1.9	18	88	5	52	32	0	8	58	1.29
37285502--37285544	18	2.4	17	80	7	50	30	0	9	60	1.28
37292691--37292719	12	2.3	13	94	5	51	65	6	6	20	1.40
37293231--37293303	34	2.2	33	80	14	78	16	23	49	10	1.77
37296830--37296887	30	1.9	30	89	0	89	41	3	24	31	1.71
37297099--37297130	13	2.5	13	94	0	55	31	0	12	56	1.37
37297225--37297466	50	4.7	50	86	4	297	26	24	29	19	1.99
37297225--37297474	100	2.4	103	88	6	364	26	24	29	20	1.99
37301072--37301129	30	1.9	30	89	0	89	41	3	24	31	1.71
37301341--37301372	13	2.5	13	94	0	55	31	0	12	56	1.37
37301467--37301708	50	4.7	50	86	4	297	26	24	29	19	1.99
37301467--37301716	100	2.4	103	88	6	364	26	24	29	20	1.99
37306252--37306285	17	2.1	17	88	5	52	26	32	0	41	1.56
37310195--37310327	41	3.2	41	77	4	160	18	22	21	38	1.93
37310172--37310367	82	2.4	82	93	1	322	17	21	20	39	1.92
37310215--37310351	41	3.3	41	79	4	159	16	20	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37310237--37310367	41	3.2	41	76	10	151	17	24	19	38	1.93
37311500--37311536	10	3.7	10	92	0	65	43	0	13	43	1.44
37311604--37311655	27	1.9	27	88	0	77	40	0	9	50	1.35
37314165--37314235	29	2.4	29	95	0	133	42	12	7	38	1.70
37314483--37314617	9	15.2	9	73	11	91	47	18	2	31	1.61
37314513--37314567	25	2.2	25	86	0	74	47	20	1	30	1.60
37314532--37314983	9	50.4	9	66	23	79	49	11	2	36	1.54
37314630--37315169	31	17.7	31	77	16	467	47	11	2	38	1.54
37314583--37314922	142	2.4	139	85	10	505	49	10	2	37	1.52
37314886--37314983	22	4.6	22	69	21	75	50	11	2	36	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170