genome.fa.s16.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  95  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29704911--29705331	176	2.4	176	88	2	596	27	24	19	29	1.98
29704880--29705155	132	2.1	130	79	6	313	26	23	19	29	1.99
29705249--29705380	44	3.0	44	80	2	158	32	22	17	27	1.96
29705126--29705661	254	2.1	254	88	2	810	27	23	19	28	1.98
29705508--29712087	44	153.7	43	68	14	645	29	24	18	28	1.98
29705600--29705698	34	2.9	34	93	0	171	30	25	22	22	1.99
29705668--29713684	88	93.3	87	65	15	1473	28	24	18	28	1.98
29705254--29706213	420	2.3	423	85	5	1279	28	25	18	27	1.98
29706020--29706084	34	1.9	34	96	0	121	29	26	23	21	1.99
29705971--29706213	78	3.0	81	85	7	321	29	26	17	26	1.98
29705552--29706511	386	2.5	385	89	2	1429	28	25	18	27	1.98
29705998--29706809	298	2.7	288	80	8	901	28	24	18	28	1.98
29705785--29707379	684	2.3	682	91	1	2532	28	24	17	28	1.97
29706362--29707179	386	2.1	383	85	4	1064	29	24	17	28	1.97
29706704--29706768	34	1.9	34	96	0	121	29	26	23	21	1.99
29706624--29706858	122	1.9	122	89	3	366	29	24	19	26	1.98
29706142--29706900	298	2.5	297	82	3	751	28	24	18	28	1.98
29706680--29707310	298	2.1	292	81	8	702	30	24	16	28	1.97
29706474--29707969	386	3.9	386	71	12	1122	29	23	17	28	1.97
29707044--29708150	254	4.3	253	74	7	980	29	23	17	29	1.97
29706821--29707379	298	1.9	299	88	3	849	29	24	16	29	1.97
29706796--29707445	298	2.2	300	79	10	774	30	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29707598--29708264	297	2.2	297	87	3	966	29	23	18	28	1.97
29708154--29708219	34	1.9	35	84	9	91	30	25	18	25	1.98
29707896--29709056	220	5.3	220	72	11	744	29	23	17	29	1.97
29708831--29709329	254	2.0	254	90	1	786	28	23	19	29	1.98
29708809--29709420	254	2.4	254	81	4	594	29	23	18	28	1.98
29709588--29709654	34	2.0	34	84	0	89	31	17	22	28	1.97
29709842--29710079	78	2.9	81	86	7	313	30	26	18	25	1.98
29709818--29710678	122	6.8	122	68	14	375	29	23	19	27	1.98
29709630--29710333	386	1.8	386	89	1	1097	28	24	19	28	1.98
29709203--29710129	298	3.1	295	73	9	802	28	24	18	27	1.98
29709926--29710587	254	2.6	254	83	5	785	28	23	19	28	1.98
29709339--29710973	640	2.5	635	85	5	2091	28	23	19	28	1.98
29709794--29713298	684	5.1	675	81	7	3149	28	23	18	28	1.98
29709926--29710675	254	2.9	254	81	6	604	28	24	19	27	1.98
29710320--29711017	386	1.8	386	87	2	1035	29	23	19	28	1.98
29710648--29711315	298	2.2	298	86	1	937	28	23	17	29	1.97
29710868--29711691	386	2.2	382	83	4	1013	29	23	17	28	1.97
29711210--29711274	34	1.9	34	96	0	121	29	26	23	21	1.99
29711166--29711403	78	2.9	81	85	7	286	30	25	18	25	1.98
29711142--29711362	122	1.8	122	88	0	343	31	23	19	25	1.98
29710648--29711405	298	2.5	297	82	3	731	29	24	18	28	1.98
29709109--29711359	640	3.5	631	78	8	2026	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29711186--29711999	298	2.7	291	79	11	887	28	24	19	27	1.99
29710954--29711701	386	1.9	386	87	2	1090	29	23	18	28	1.98
29711894--29711958	34	1.9	34	90	0	103	27	23	26	23	2.00
29711839--29712085	78	3.0	82	81	10	297	30	27	17	24	1.97
29711814--29712041	122	1.9	122	89	3	361	29	27	19	24	1.98
29711244--29712089	298	2.8	297	82	5	770	29	24	19	26	1.98
29711870--29712524	298	2.2	287	78	10	713	29	23	18	28	1.97
29712213--29712315	44	2.3	44	88	4	154	37	22	16	23	1.93
29711560--29712378	386	2.1	386	87	3	1187	29	24	18	27	1.98
29712451--29712545	44	2.2	44	78	0	100	28	24	14	32	1.95
29712534--29712598	34	1.9	34	90	0	103	30	27	21	20	1.98
29711972--29712639	298	2.2	298	78	6	810	29	24	17	28	1.97
29712718--29713686	44	22.3	44	68	15	166	28	23	18	28	1.98
29712568--29713518	220	4.3	221	77	6	961	28	23	18	29	1.98
29713421--29713643	122	1.8	122	90	1	358	30	25	20	24	1.99
29714860--29714888	15	1.9	15	100	0	58	27	27	13	31	1.94
29723603--29723880	50	5.8	49	73	13	188	27	21	21	29	1.98
29723496--29724015	189	2.8	187	85	2	695	29	20	19	30	1.97
29723494--29723953	44	9.9	44	70	13	183	28	21	20	30	1.98
29727301--29727418	43	2.8	43	88	1	166	27	32	17	22	1.97
29727448--29727526	41	1.9	42	84	7	108	35	21	13	29	1.92
29729349--29729375	5	5.4	5	100	0	54	18	0	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29729520--29729571	25	2.1	24	86	10	70	73	5	1	19	1.14
29731925--29732131	109	1.9	106	91	2	333	28	10	11	49	1.72
29731769--29732524	260	2.9	261	92	3	1241	28	13	13	44	1.81
29732186--29732396	109	1.9	108	89	2	325	27	10	12	48	1.74
29733082--29733152	14	4.9	14	77	14	65	35	42	0	22	1.54
29733097--29733145	7	6.9	7	76	4	53	32	46	0	20	1.51
29733108--29733169	22	2.9	22	82	2	63	37	45	0	17	1.49
29733128--29733180	21	2.5	22	81	9	65	39	39	0	20	1.53
29733168--29733209	14	2.9	14	82	6	57	35	35	0	28	1.58
29733164--29733210	15	3.3	15	82	8	62	40	31	0	27	1.57
29733382--29733432	15	3.5	15	76	12	61	33	45	0	21	1.52
29733762--29734298	114	4.7	113	85	3	682	26	24	22	26	2.00
29755465--29755504	19	2.1	19	86	9	55	67	0	0	32	0.91
29767748--29767809	20	3.1	20	73	0	70	37	19	30	12	1.89
29769656--29769824	37	4.6	37	84	0	203	28	16	19	35	1.94
29770485--29770519	13	2.7	13	100	0	70	57	8	8	25	1.57
29772828--29773119	50	5.9	50	85	3	340	27	22	28	21	1.99
29774949--29774993	22	2.0	22	82	0	54	64	8	6	20	1.44
29776683--29776725	21	2.1	20	83	12	52	13	6	4	74	1.19
29776842--29776876	15	2.3	15	95	0	61	22	0	11	65	1.24
29788740--29789732	217	4.6	217	91	0	1563	30	20	21	27	1.98
29788740--29789728	44	22.8	44	67	12	252	30	20	22	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29791057--29791137	30	2.8	30	77	7	78	30	2	4	61	1.30
29791107--29791143	18	2.1	18	94	0	65	32	2	5	59	1.34
29791342--29791384	21	2.1	20	83	12	52	13	6	4	74	1.19
29791501--29791535	15	2.3	15	100	0	70	20	0	14	65	1.26
29793036--29793106	36	2.0	36	83	5	90	22	5	7	64	1.39
29793632--29793664	12	2.6	13	90	9	59	75	6	0	18	1.00
29793634--29793664	6	5.0	6	96	4	53	80	3	0	16	0.83
29806338--29806542	85	2.5	82	88	5	331	51	16	6	25	1.69
29806615--29807046	159	2.7	155	81	5	508	32	14	15	37	1.87
29811603--29811639	9	4.0	9	89	3	56	21	2	8	67	1.29
29811661--29811706	18	2.6	18	82	6	58	34	2	2	60	1.21
29818033--29818062	5	5.8	5	96	4	51	20	3	0	76	0.92
29818193--29818231	20	2.0	19	90	5	60	64	0	0	35	0.94
29827492--29827677	40	4.7	40	86	7	227	26	27	22	24	2.00
29835456--29835641	40	4.7	40	88	4	250	26	27	21	24	1.99
29845731--29845924	98	2.0	97	86	3	273	48	2	3	45	1.31
29845855--29845919	26	2.5	25	78	11	69	46	1	1	50	1.20
29845895--29845927	16	2.0	17	88	5	50	54	0	0	45	0.99
29850533--29850719	51	3.7	50	78	5	169	31	24	17	27	1.97
29850533--29850719	101	1.8	101	85	5	261	31	24	17	27	1.97
29853207--29853261	26	2.1	26	86	6	76	18	7	20	54	1.66
29855668--29855810	72	2.0	72	92	0	241	28	17	18	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29859406--29859468	33	2.0	32	84	6	83	58	4	14	22	1.54
29860817--29860850	17	2.1	16	88	5	50	38	5	0	55	1.24
29861475--29861528	20	2.8	20	80	8	58	55	0	5	38	1.23
29861504--29861556	26	2.1	25	86	10	72	62	0	1	35	1.06
29865263--29865287	13	1.9	13	100	0	50	84	0	16	0	0.63
29866088--29866148	32	1.9	32	86	0	86	26	32	11	29	1.91
29867741--29867827	30	2.9	29	74	8	84	27	9	6	56	1.56
29868937--29868991	7	8.1	7	74	8	51	1	20	0	78	0.85
29869052--29869108	27	2.1	27	93	0	96	14	28	15	42	1.86
29870007--29870041	18	2.0	18	94	5	63	57	0	14	28	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170