genome.fa.s16.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  23  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6075960--6076025	29	2.3	29	81	5	80	57	1	0	40	1.08
6075989--6076025	16	2.3	17	86	13	60	62	0	0	37	0.96
6076045--6076115	15	4.6	15	72	16	56	49	1	1	47	1.18
6079337--6079385	22	2.2	22	77	0	53	65	14	12	8	1.47
6089807--6089871	32	2.0	32	100	0	130	27	18	15	38	1.91
6095607--6095647	3	13.7	3	89	0	64	60	0	0	39	0.96
6095904--6095947	20	2.2	20	84	12	54	72	4	0	22	1.02
6108402--6108470	33	2.1	33	100	0	138	36	23	17	23	1.95
6119509--6119556	21	2.3	21	100	0	96	22	29	4	43	1.72
6132877--6133020	72	2.0	72	89	2	218	41	15	15	27	1.87
6136976--6137001	13	2.0	13	100	0	52	84	0	0	15	0.62
6151166--6151688	260	2.0	260	99	0	1028	31	11	22	35	1.89
6155679--6155707	2	14.5	2	100	0	58	48	0	51	0	1.00
6156899--6156929	16	1.9	16	93	0	53	32	3	9	54	1.49
6156948--6156987	21	1.9	21	84	0	53	45	5	5	45	1.47
6157130--6157182	28	2.0	26	81	7	61	35	5	3	54	1.42
6157716--6157830	34	3.5	34	83	4	139	42	0	14	42	1.46
6157913--6158439	126	4.2	126	87	1	696	37	15	17	28	1.91
6157913--6158439	253	2.1	252	87	0	739	37	15	17	28	1.91
6160390--6160446	21	2.7	21	83	0	87	15	28	17	38	1.91
6160317--6160461	42	3.5	42	80	5	159	15	23	17	43	1.87
6164698--6164743	18	2.6	18	89	0	65	43	8	23	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6167214--6167246	14	2.4	14	89	0	57	27	21	6	45	1.75
6167746--6167815	22	3.1	22	76	11	79	42	1	0	55	1.08
6167781--6167815	11	3.2	11	87	0	52	45	0	0	54	0.99
6176798--6177524	362	2.0	363	98	0	1420	36	23	14	25	1.93
6189364--6189405	13	3.5	13	75	18	54	38	0	11	50	1.40
6189361--6189405	23	2.0	23	100	0	90	40	0	11	48	1.39
6197759--6197785	13	2.1	13	100	0	54	22	14	29	33	1.94
6200338--6200363	12	2.2	12	100	0	52	34	7	30	26	1.85
6210088--6210135	25	1.9	25	86	0	69	16	27	27	29	1.97
6212529--6212613	27	3.0	29	88	8	129	15	22	35	27	1.94
6219944--6219994	26	2.0	26	96	0	93	11	23	35	29	1.90
6219866--6220228	103	3.6	104	93	3	591	19	20	30	30	1.97
6235594--6235626	7	4.6	7	92	7	57	72	0	27	0	0.85
6241982--6242040	31	1.9	31	92	0	100	27	13	6	52	1.65
6245789--6245839	3	17.3	3	95	4	95	31	0	0	68	0.90
6257901--6258050	45	3.3	46	69	10	137	32	20	22	25	1.98
6257927--6258076	44	3.3	45	70	10	126	35	16	24	24	1.95
6257903--6258076	92	1.9	89	92	3	294	32	18	23	25	1.97
6259436--6259460	9	2.8	9	100	0	50	0	12	0	88	0.53
6266498--6266533	14	2.6	14	95	0	63	44	16	11	27	1.82
6266891--6266984	3	30.7	3	78	14	86	65	2	5	26	1.25
6283490--6283670	30	6.1	30	85	8	262	37	11	16	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6283484--6283663	59	3.0	59	99	0	351	38	11	15	35	1.83
6291103--6291135	18	1.9	17	88	11	50	48	0	21	30	1.50
6296871--6296901	12	2.6	12	94	0	53	25	38	25	9	1.86
6297927--6298002	21	3.6	21	83	5	91	35	25	22	17	1.95
6298344--6298383	16	2.5	16	84	11	55	25	22	0	52	1.47
6298800--6298855	5	11.2	5	100	0	112	60	0	0	39	0.97
6303015--6303072	29	2.0	29	80	12	66	41	27	1	29	1.66
6303630--6303702	33	2.2	33	85	9	96	54	6	0	38	1.27
6310705--6310742	18	2.0	20	90	10	62	76	5	0	18	0.97
6310789--6310824	15	2.4	15	90	0	54	36	38	8	16	1.79
6327799--6327831	17	2.0	17	88	5	50	45	21	0	33	1.52
6328575--6328752	40	4.4	41	75	11	134	32	26	15	25	1.96
6331555--6331601	9	5.2	9	89	0	76	27	10	23	38	1.88
6331555--6331601	18	2.6	18	100	0	94	27	10	23	38	1.88
6331656--6331692	9	4.1	9	89	0	56	45	10	10	32	1.74
6331728--6331769	21	2.0	21	86	9	59	21	33	2	42	1.66
6333322--6333369	22	2.2	22	92	7	80	70	6	0	22	1.09
6334762--6334852	42	2.2	42	88	4	130	29	27	18	24	1.98
6334949--6335100	43	3.5	43	84	1	198	26	30	15	27	1.96
6338679--6338742	22	3.0	21	79	6	65	68	7	1	21	1.23
6338896--6339332	5	87.6	5	98	1	835	40	0	0	59	0.97
6341969--6342019	15	3.5	15	74	15	52	37	31	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6342003--6342062	7	8.6	7	78	7	59	33	48	1	16	1.56
6341995--6342071	14	5.5	14	78	9	50	32	46	1	19	1.58
6342579--6342702	41	3.0	41	80	6	153	30	25	20	22	1.98
6342729--6342839	40	2.8	40	80	9	120	16	21	23	38	1.92
6343961--6344007	21	2.2	21	92	0	76	70	6	10	12	1.33
6344001--6344085	39	2.2	40	79	10	95	56	7	14	22	1.62
6344098--6344154	20	2.8	20	81	2	69	57	14	17	10	1.64
6344096--6344174	21	3.9	21	78	8	74	59	10	16	13	1.60
6345089--6345134	17	2.8	17	75	15	51	60	4	2	32	1.28
6347398--6347453	18	3.1	18	80	10	69	10	5	44	39	1.62
6350318--6350415	30	3.2	30	71	7	81	32	6	8	53	1.55
6350555--6350592	20	1.9	20	88	0	58	73	0	18	7	1.06
6352283--6353131	114	7.4	114	92	1	1362	34	19	20	25	1.96
6352283--6353131	229	3.7	229	93	0	1382	34	19	20	25	1.96
6353840--6353882	21	2.0	22	86	4	61	25	2	23	48	1.62
6354148--6354181	15	2.2	16	89	5	52	58	0	2	38	1.13
6354382--6354419	20	1.9	20	94	0	67	34	0	7	57	1.28
6354939--6354978	12	3.2	12	85	3	53	15	47	2	35	1.58
6355081--6355126	16	2.9	16	96	0	83	10	45	13	30	1.77
6356098--6356156	26	2.3	26	96	0	109	38	15	3	42	1.63
6356881--6357115	42	5.6	41	79	7	195	29	19	25	26	1.98
6358808--6358845	15	2.5	15	91	0	58	34	7	0	57	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6362216--6362256	19	2.2	18	86	4	55	34	17	0	48	1.47
6362693--6362723	10	3.2	10	90	9	55	9	19	0	70	1.14
6369457--6369489	14	2.3	15	85	15	52	57	0	0	42	0.98
6382631--6382666	11	3.2	11	88	7	54	50	0	2	47	1.15
6382626--6382684	22	2.7	22	86	5	75	55	1	1	40	1.20
6387425--6387565	42	3.3	44	76	5	153	27	18	25	28	1.98
6390522--6390561	17	2.4	17	86	0	53	52	2	5	40	1.37
6393905--6394063	42	3.8	40	74	9	120	30	28	17	23	1.97
6408325--6408421	31	3.1	31	88	2	140	36	14	8	41	1.76
6409261--6409305	23	1.9	24	86	4	65	44	0	2	53	1.13
6413307--6413347	16	2.5	17	92	4	66	36	34	4	24	1.77
6414250--6414283	16	2.1	16	94	0	59	41	0	8	50	1.34
6417348--6417406	24	2.5	24	88	0	91	44	0	25	30	1.55
6417444--6417505	30	2.1	29	93	3	106	37	6	8	48	1.59
6417476--6417552	37	2.1	37	92	0	127	32	3	15	48	1.64
6417486--6417546	17	3.4	17	68	12	50	31	1	14	52	1.52
6417553--6417689	9	14.6	9	87	6	175	21	8	32	37	1.83
6417795--6417860	29	2.3	27	78	16	71	28	12	27	31	1.92
6418906--6418965	22	2.7	23	86	5	86	8	36	10	45	1.68
6421985--6422029	15	2.9	16	80	9	58	44	0	2	53	1.13
6421943--6422359	120	3.5	120	92	1	694	43	1	5	48	1.36
6422154--6422347	66	3.1	67	63	29	154	42	2	6	48	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6422216--6422267	15	3.6	15	80	12	56	44	0	1	53	1.11
6422134--6422812	218	3.0	218	86	10	945	41	1	5	51	1.36
6422254--6422457	98	2.1	99	96	0	374	40	0	6	51	1.34
6422434--6422485	15	3.6	15	80	12	56	44	0	1	53	1.11
6422353--6422836	119	4.1	120	96	1	881	41	1	5	51	1.34
6421973--6422836	337	2.5	350	88	7	1294	42	1	5	50	1.34
6422553--6422604	15	3.6	15	80	12	56	44	0	1	53	1.11
6422353--6422836	239	2.0	235	95	2	871	41	1	5	51	1.34
6422798--6422839	15	2.7	16	82	14	52	45	0	2	52	1.13
6422770--6422830	15	4.2	15	75	12	56	47	0	1	50	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170