genome.fa.s16.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  161  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47796805--47796829	12	2.1	12	100	0	50	24	36	24	16	1.94
47796995--47797063	9	7.7	9	83	0	84	43	21	7	27	1.79
47796995--47797063	27	2.6	27	83	0	93	43	21	7	27	1.79
47797168--47797211	18	2.4	18	88	0	61	13	2	43	40	1.57
47798442--47798484	13	3.3	13	80	0	50	32	2	13	51	1.54
47813558--47813594	6	6.2	6	96	0	65	35	32	18	13	1.90
47820787--47820816	2	15.0	2	100	0	60	50	0	50	0	1.00
47822105--47822232	62	2.0	63	84	1	168	35	4	17	42	1.70
47841965--47842036	31	2.4	30	79	4	81	36	12	11	40	1.79
47863210--47863242	16	2.1	16	88	11	50	36	18	9	36	1.82
47867703--47867754	23	2.3	23	100	0	104	34	26	21	17	1.95
47869086--47869118	17	1.9	17	93	0	57	24	0	15	60	1.35
47869683--47869726	22	1.9	22	86	9	61	43	0	9	47	1.35
47870344--47870479	46	2.9	47	92	3	231	36	8	26	27	1.86
47873104--47873248	69	2.1	69	79	6	150	42	20	13	22	1.87
47876485--47876695	92	2.3	92	90	1	325	35	19	16	28	1.93
47876485--47876723	92	2.6	92	87	1	273	35	20	15	28	1.93
47882292--47882343	4	13.0	4	81	0	50	26	7	23	42	1.81
47882296--47882342	24	2.0	24	86	0	67	27	8	21	42	1.81
47883213--47883289	31	2.4	30	72	10	73	29	11	10	48	1.73
47883270--47883305	16	2.2	16	95	0	63	38	2	5	52	1.39
47888749--47888803	3	18.3	3	88	0	65	58	0	5	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47894699--47894723	2	12.5	2	100	0	50	48	0	0	52	1.00
47902459--47902487	3	9.7	3	100	0	58	68	0	0	31	0.89
47905417--47905500	29	2.9	29	98	0	159	50	20	11	17	1.78
47907764--47907846	42	2.0	43	92	2	141	59	3	15	21	1.52
47908600--47909021	44	9.6	44	74	6	354	30	24	18	26	1.97
47908577--47909017	132	3.3	132	92	0	693	29	25	17	26	1.98
47922157--47922239	42	2.0	43	92	2	141	59	3	15	21	1.52
47927155--47927210	29	1.9	29	96	0	103	51	21	8	17	1.72
47927302--47927353	24	2.2	24	85	0	68	50	7	3	38	1.50
47927624--47927691	31	2.2	31	86	5	93	38	13	8	39	1.75
47929759--47929803	20	2.2	20	84	7	56	51	6	11	31	1.63
47930175--47930242	32	2.2	32	97	2	129	23	8	16	51	1.72
47934738--47934826	45	2.0	45	97	0	169	29	22	12	35	1.91
47940125--47940165	20	2.0	20	86	9	57	56	7	2	34	1.40
47942656--47942715	30	2.0	30	93	0	102	55	15	5	25	1.60
47943766--47943820	26	2.1	27	83	16	71	34	0	3	61	1.13
47943765--47943823	27	2.2	27	80	20	70	35	0	3	61	1.13
47943965--47944005	20	2.0	20	95	0	73	9	43	14	31	1.78
47945363--47945610	50	4.9	49	76	7	196	23	27	20	27	1.99
47946857--47946919	13	5.0	13	75	16	53	71	0	26	1	0.95
47947087--47947205	60	2.0	60	91	0	193	33	0	12	53	1.39
47953004--47953037	13	2.5	14	85	9	52	0	20	2	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47953167--47953253	27	3.2	27	80	0	102	21	28	24	25	1.99
47953691--47953746	21	2.7	21	91	0	94	25	8	37	28	1.86
47953915--47954040	30	4.2	29	89	4	180	35	10	2	51	1.49
47954064--47954222	58	2.7	59	80	9	166	13	50	3	32	1.59
47954117--47954219	28	3.6	28	71	15	93	10	53	3	32	1.54
47954124--47954213	21	4.4	21	62	27	50	10	54	4	31	1.53
47954205--47954229	6	4.2	6	100	0	50	16	48	0	36	1.46
47963023--47963279	87	2.9	87	88	2	345	24	22	22	30	1.99
47962999--47963449	44	10.5	43	71	14	267	26	21	21	30	1.98
47980989--47981031	17	2.5	17	92	0	68	20	27	27	23	1.99
47981241--47981301	25	2.4	25	88	0	77	24	3	18	54	1.58
47981353--47981398	21	2.2	21	84	0	56	28	0	30	41	1.56
47986707--47986849	67	2.1	67	79	6	155	46	7	4	41	1.52
47987389--47987583	98	2.0	98	91	0	318	36	24	10	27	1.89
47989363--47989791	9	49.0	9	72	14	303	44	19	1	34	1.59
47989500--47989791	34	8.6	34	75	10	201	44	20	1	33	1.60
47989499--47989768	104	2.7	101	84	6	323	44	20	1	33	1.60
47989712--47989791	25	3.2	25	79	13	60	45	21	0	33	1.52
47990437--47990491	25	2.2	25	90	0	83	25	3	18	52	1.61
47990538--47990591	15	3.7	15	80	2	56	22	0	42	35	1.54
47990538--47990583	22	2.1	22	84	4	58	23	0	41	34	1.55
47990583--47990652	35	1.9	36	82	5	88	25	0	30	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47990801--47990845	15	3.0	15	90	0	63	20	0	37	42	1.52
47990801--47990852	22	2.4	21	84	9	68	21	1	36	40	1.64
48013790--48013940	42	3.6	42	90	1	234	30	19	20	29	1.97
48014265--48014401	68	2.0	66	88	2	202	13	26	17	43	1.86
48015928--48016037	48	2.3	48	96	1	204	55	12	6	25	1.61
48019669--48020151	9	55.4	9	72	14	313	33	0	19	45	1.56
48019670--48020206	34	15.8	34	73	14	346	33	0	19	46	1.56
48019669--48020151	25	18.5	27	74	13	313	33	0	19	45	1.56
48020064--48020206	70	2.1	64	81	10	153	32	1	17	48	1.56
48021931--48022125	98	2.0	98	91	0	318	27	10	24	36	1.89
48028129--48028183	25	2.2	25	93	0	92	52	20	3	23	1.62
48028141--48028196	25	2.2	25	83	0	67	55	17	1	25	1.52
48028399--48028441	17	2.5	17	96	0	77	23	30	27	18	1.98
48032548--48032592	23	2.0	23	86	0	63	40	8	0	51	1.33
48037129--48038220	544	2.0	544	100	0	2184	25	22	23	28	2.00
48045842--48045901	30	2.0	30	93	0	102	23	6	15	55	1.64
48046205--48046278	33	2.2	33	83	4	87	48	16	6	28	1.71
48049172--48049237	30	2.2	30	91	0	105	30	9	42	18	1.81
48049211--48049422	108	2.0	108	92	0	352	27	13	33	26	1.93
48050056--48050100	9	4.9	9	78	5	54	31	0	2	66	1.04
48050056--48050108	18	2.9	19	84	13	60	28	0	1	69	0.99
48050618--48050663	22	2.1	22	95	0	83	45	13	0	41	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48051751--48051806	29	1.9	29	88	0	85	37	17	7	37	1.78
48052330--48052357	13	2.2	13	100	0	56	25	7	7	60	1.48
48053706--48053731	11	2.4	11	100	0	52	53	15	0	30	1.42
48055706--48055801	47	2.0	47	83	0	120	33	18	7	40	1.78
48073638--48073690	22	2.4	22	84	9	63	41	11	1	45	1.51
48078429--48078475	21	2.3	21	85	10	62	44	36	0	19	1.51
48080977--48081020	24	1.9	22	86	9	61	43	9	0	47	1.35
48083064--48083097	10	3.4	10	87	0	50	76	0	8	14	1.01
48083169--48083205	11	3.2	12	81	14	51	64	0	0	35	0.94
48083212--48083257	23	2.0	22	83	4	56	63	2	0	34	1.07
48083157--48083343	10	18.8	10	68	17	61	59	3	1	36	1.21
48084248--48084390	9	14.7	9	68	21	67	40	2	3	53	1.30
48084245--48084340	39	2.4	39	76	13	97	36	3	4	56	1.34
48084247--48084342	20	4.8	20	74	13	81	37	3	4	55	1.35
48084248--48084343	30	3.2	29	74	8	86	38	3	4	54	1.36
48084247--48084393	10	14.9	10	67	23	62	40	2	3	53	1.29
48088827--48088860	16	2.0	16	88	11	50	44	2	0	52	1.16
48093526--48093565	16	2.5	16	91	0	62	47	0	10	42	1.37
48093576--48093715	59	2.4	59	97	0	262	40	4	8	47	1.54
48093697--48093724	9	3.1	9	100	0	56	32	0	10	57	1.33
48093817--48093866	24	2.3	20	81	18	64	60	2	0	38	1.09
48093821--48093864	24	1.9	22	90	9	70	61	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48094117--48094242	65	1.9	66	85	4	175	26	17	15	41	1.88
48102516--48102549	18	1.9	18	88	5	52	29	0	5	64	1.17
48102639--48102690	17	3.2	16	76	12	54	71	0	0	28	0.87
48123210--48123266	19	3.1	19	87	7	73	57	5	0	36	1.21
48123240--48123292	26	2.1	24	82	6	61	56	5	1	35	1.34
48123228--48123291	24	2.9	22	76	15	62	57	6	1	34	1.33
48123291--48123324	17	2.0	17	100	0	68	64	0	5	29	1.17
48124309--48124393	9	9.4	9	78	10	93	27	10	24	37	1.88
48124309--48124393	18	4.7	18	81	11	111	27	10	24	37	1.88
48124312--48124393	36	2.3	36	89	6	130	25	10	25	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170