genome.fa.s16.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  123  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37639722--37639803	41	2.0	41	100	0	164	29	14	31	24	1.95
37641285--37641313	14	2.1	14	100	0	58	44	6	6	41	1.58
37641833--37641865	12	2.5	13	85	14	50	24	0	0	75	0.80
37641958--37642002	17	2.6	18	76	20	51	53	0	2	44	1.13
37663026--37663092	26	2.6	26	92	4	109	44	8	0	46	1.35
37663225--37663424	4	50.0	4	73	17	143	72	1	27	0	0.92
37663225--37663431	18	11.1	18	72	19	108	71	0	27	0	0.92
37663350--37663486	46	3.1	46	84	5	174	72	0	26	0	0.89
37663312--37663412	11	9.0	11	71	8	60	76	0	22	0	0.85
37663434--37663487	26	2.0	27	82	3	65	72	0	27	0	0.85
37664339--37665046	160	4.4	160	71	18	546	49	7	12	29	1.69
37664500--37665019	160	3.3	158	73	15	573	49	7	12	29	1.69
37664260--37665046	318	2.5	320	95	1	1411	49	8	12	29	1.69
37667025--37667068	3	14.3	3	90	4	70	63	4	0	31	1.14
37667114--37667152	20	2.0	21	85	10	55	66	10	0	23	1.22
37667301--37667385	27	3.1	27	84	0	116	17	29	27	25	1.98
37669265--37669314	23	2.3	22	83	13	59	8	6	6	80	1.04
37669751--37669810	30	2.0	31	86	3	86	20	40	0	40	1.52
37674206--37674264	30	2.0	30	93	0	100	32	30	0	37	1.58
37674297--37674362	30	2.2	31	97	2	125	31	0	0	68	0.90
37676672--37677018	30	11.8	30	90	3	553	46	25	1	27	1.60
37676672--37677018	59	5.9	60	90	3	553	46	25	1	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37680217--37680493	121	2.3	122	92	3	450	34	19	15	29	1.93
37682030--37682259	43	5.3	43	92	0	334	28	30	18	23	1.97
37683176--37683691	160	3.2	160	94	1	892	40	23	5	30	1.77
37683480--37683766	114	2.5	113	89	3	470	41	22	4	30	1.75
37683176--37683769	23	26.0	23	74	10	418	40	23	5	30	1.76
37686684--37686803	41	3.0	41	88	1	170	30	24	20	24	1.99
37686860--37686970	40	2.8	40	84	9	131	20	25	20	33	1.97
37687874--37687912	20	2.0	20	89	0	60	41	12	5	41	1.65
37691745--37691780	15	2.5	14	86	8	54	44	8	0	47	1.33
37693476--37693525	22	2.3	22	82	6	57	22	10	44	24	1.83
37693672--37693744	13	6.2	12	79	14	57	76	0	4	19	0.94
37693680--37693744	17	3.8	17	78	13	71	78	0	3	18	0.88
37693695--37693745	8	6.2	8	73	13	50	80	0	3	15	0.86
37693680--37693744	10	6.2	11	77	18	59	78	0	3	18	0.88
37700126--37700163	15	2.6	15	91	4	60	47	7	0	44	1.32
37701667--37701705	18	2.2	17	86	13	53	33	0	20	46	1.51
37701824--37701848	8	3.1	8	100	0	50	24	16	24	36	1.94
37701938--37702035	23	4.3	23	90	2	162	20	21	26	31	1.98
37701940--37702028	45	2.0	45	95	0	160	19	22	26	31	1.97
37709023--37709061	18	2.2	17	86	13	53	33	0	20	46	1.51
37709180--37709204	8	3.1	8	100	0	50	24	16	24	36	1.94
37709293--37709390	23	4.3	23	89	2	153	20	20	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37709295--37709383	45	2.0	45	97	0	169	19	21	26	32	1.97
37715716--37715747	7	4.6	7	100	0	64	68	0	0	31	0.90
37721009--37721532	260	2.0	262	95	0	953	32	17	14	34	1.91
37722113--37722169	30	1.9	30	96	0	105	19	22	14	43	1.86
37729636--37729687	24	2.2	24	89	0	77	36	3	9	50	1.54
37734027--37734078	24	2.2	24	85	0	68	38	3	7	50	1.50
37734044--37734089	24	1.9	24	86	8	67	41	4	6	47	1.49
37739178--37739219	18	2.3	18	91	0	66	52	23	9	14	1.71
37749439--37749468	15	2.1	15	93	6	53	6	26	0	66	1.16
37750167--37750265	48	2.1	48	81	7	112	21	12	23	43	1.86
37752422--37752462	20	2.0	20	86	9	57	9	26	19	43	1.82
37767635--37767668	3	11.3	3	100	0	68	64	0	0	35	0.94
37776978--37777020	14	3.0	13	83	16	50	27	2	9	60	1.40
37777552--37777607	27	2.1	27	93	0	94	21	30	23	25	1.99
37780573--37780809	85	2.8	85	88	1	334	34	24	17	23	1.96
37780610--37780809	43	4.7	42	80	7	217	35	25	17	22	1.95
37783142--37783374	77	3.1	77	87	1	326	54	11	8	26	1.63
37783588--37783682	33	2.9	33	88	3	147	22	9	50	17	1.75
37783588--37783715	66	1.9	66	79	6	143	25	10	46	17	1.80
37784143--37784184	17	2.4	18	76	11	52	35	11	21	30	1.90
37785325--37785394	26	2.7	26	82	6	81	17	24	21	37	1.94
37787930--37787989	26	2.4	26	94	5	106	41	11	0	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37788046--37788124	27	2.9	27	88	0	113	30	21	31	16	1.95
37788168--37788231	4	16.0	4	81	12	60	67	0	32	0	0.91
37788207--37788267	24	2.6	23	78	2	68	67	0	32	0	0.91
37788202--37788303	33	3.1	31	76	17	89	66	0	32	0	0.98
37788155--37788374	80	2.8	79	81	11	247	65	0	34	0	0.99
37788177--37788344	41	4.2	41	78	13	170	66	0	32	1	0.99
37789095--37789150	27	2.1	27	93	0	94	44	14	32	8	1.76
37790625--37790663	7	5.6	7	93	0	69	41	41	0	17	1.50
37794084--37794128	18	2.5	18	92	0	72	15	48	4	31	1.65
37795054--37795092	19	2.0	21	85	10	55	69	12	0	17	1.19
37795115--37795156	10	4.0	11	84	9	61	0	28	0	71	0.86
37795249--37795308	27	2.2	27	87	0	84	20	33	21	25	1.97
37795366--37795455	27	3.4	27	95	1	164	50	0	11	38	1.38
37796479--37796910	104	4.2	104	83	10	550	54	15	0	29	1.44
37796479--37796910	206	2.1	204	84	12	571	54	15	0	29	1.44
37796883--37797047	72	2.3	72	95	0	294	53	16	0	28	1.48
37797297--37797359	3	21.3	3	93	3	110	0	30	0	69	0.88
37797693--37797739	23	2.0	23	87	0	67	55	0	2	42	1.12
37797898--37797945	6	8.0	6	97	0	78	16	12	0	70	1.16
37799898--37799936	20	2.0	19	95	5	69	25	0	23	51	1.49
37802755--37803091	44	7.7	44	71	15	141	26	23	20	28	1.99
37802749--37802870	44	2.7	45	82	6	142	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37802480--37803247	217	3.6	215	84	6	949	27	22	20	29	1.98
37803124--37803246	44	2.8	45	81	3	126	27	24	18	29	1.98
37824617--37825050	146	3.0	144	95	2	769	35	14	17	32	1.90
37825803--37825829	3	9.0	3	100	0	54	33	33	0	33	1.58
37829954--37830181	84	2.7	83	77	14	227	47	11	7	32	1.69
37830021--37830181	84	1.9	86	86	7	231	49	11	6	32	1.65
37830144--37830403	86	3.0	86	88	4	333	43	11	13	31	1.80
37830148--37830432	86	3.3	85	84	6	254	43	11	13	31	1.80
37831510--37831554	24	1.9	23	86	4	63	64	4	2	28	1.25
37836904--37836940	18	2.1	18	94	0	65	51	13	5	29	1.63
37837153--37837212	30	2.0	31	86	3	86	20	36	0	43	1.52
37837290--37837347	17	3.2	17	76	16	55	24	25	0	50	1.50
37838964--37839013	17	2.7	19	82	14	61	36	12	0	52	1.39
37849327--37849448	25	4.9	24	72	12	104	30	13	19	36	1.90
37849301--37849497	100	2.0	100	83	2	252	29	12	20	37	1.90
37849316--37849499	50	3.7	50	84	1	226	29	12	19	39	1.88
37861956--37861980	12	2.1	12	100	0	50	8	8	24	60	1.52
37862896--37863023	67	1.9	67	85	3	179	37	7	3	50	1.50
37872740--37872774	15	2.4	15	90	4	54	34	8	0	57	1.29
37878957--37879471	87	5.9	87	87	1	604	29	23	23	23	1.99
37879308--37879445	44	3.2	43	67	15	120	28	25	23	22	1.99
37879584--37879737	40	3.8	40	76	6	155	28	23	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37881369--37881403	15	2.4	15	90	4	54	34	8	0	57	1.29
37882097--37882294	107	1.9	106	90	1	315	32	17	16	33	1.92
37883049--37883073	13	1.9	13	100	0	50	60	0	0	40	0.97
37892681--37892768	30	2.9	30	73	9	90	27	23	29	19	1.98
37893501--37893625	3	43.3	3	68	17	61	24	6	1	67	1.23
37895338--37895419	6	13.7	6	88	0	110	14	4	2	78	1.03
37898568--37898738	27	6.3	26	78	12	168	42	18	16	22	1.89
37898568--37898738	81	2.1	81	83	6	213	42	18	16	22	1.89
37898567--37898740	54	3.2	52	82	6	204	42	18	16	22	1.89
37927674--37927700	11	2.5	11	100	0	54	51	0	25	22	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170