genome.fa.s16.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  122  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37314692--37314977	53	5.1	51	73	20	220	48	10	3	38	1.53
37315009--37315060	16	3.1	16	88	5	77	46	21	0	32	1.52
37315009--37315299	9	34.3	9	66	19	74	43	15	2	38	1.58
37320799--37320962	66	2.5	65	83	4	186	39	18	26	14	1.90
37320943--37320983	21	2.0	21	90	0	64	41	19	36	2	1.65
37320972--37321052	21	3.9	21	83	0	99	34	16	43	6	1.72
37321216--37321245	9	3.2	9	90	9	51	30	0	3	66	1.07
37321400--37321518	43	2.7	43	76	11	127	21	19	29	30	1.97
37321489--37321781	43	6.8	43	81	6	342	30	27	19	21	1.98
37321489--37321781	86	3.4	86	93	0	478	30	27	19	21	1.98
37321489--37321781	129	2.3	128	84	7	378	30	27	19	21	1.98
37323176--37323210	16	2.1	17	89	5	54	51	5	0	42	1.25
37323311--37323360	21	2.4	21	89	0	73	40	8	0	52	1.31
37328395--37328434	16	2.5	16	83	0	53	37	2	0	60	1.11
37328372--37328490	42	3.0	38	77	15	143	37	4	1	56	1.29
37333223--37333269	24	2.0	24	83	8	60	8	6	27	57	1.53
37334418--37334511	31	3.0	31	93	3	161	31	8	14	44	1.76
37335081--37335130	11	4.7	11	75	9	50	74	12	14	0	1.09
37335150--37335190	17	2.3	18	87	4	57	68	14	17	0	1.22
37338225--37338318	31	3.0	31	93	3	161	31	8	14	44	1.76
37342591--37342886	129	2.3	129	92	1	477	32	21	17	28	1.96
37342824--37343147	89	3.7	88	68	12	236	28	23	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37343032--37343149	44	2.7	44	82	13	152	26	24	20	28	1.99
37342678--37343105	172	2.5	173	83	7	539	29	22	18	29	1.97
37342850--37343149	45	6.9	45	70	16	168	27	24	19	29	1.98
37345160--37345184	13	1.9	13	100	0	50	40	12	40	8	1.72
37351201--37351246	24	1.9	24	86	0	65	10	26	17	45	1.81
37366207--37366244	20	1.9	20	94	0	67	50	0	2	47	1.15
37372748--37372842	25	3.8	25	77	14	88	29	25	18	26	1.98
37372987--37373047	31	1.9	32	83	9	81	42	8	14	34	1.76
37380178--37380211	17	2.0	17	94	0	59	55	5	14	23	1.61
37380644--37380697	21	2.6	21	87	0	81	25	38	0	35	1.57
37381410--37381457	24	2.0	24	100	0	96	25	20	20	33	1.97
37387836--37387922	28	3.1	28	100	0	174	43	25	3	27	1.70
37411758--37411842	41	2.1	41	100	0	170	49	11	2	36	1.52
37415166--37415190	7	3.6	7	100	0	50	0	28	16	56	1.41
37417611--37417655	19	2.4	19	85	7	56	26	24	11	37	1.89
37420755--37420779	9	2.8	9	100	0	50	84	8	0	8	0.79
37421701--37421752	24	2.2	24	96	0	95	28	11	28	30	1.92
37422030--37422374	45	7.7	45	78	7	278	31	20	22	26	1.98
37422074--37422461	178	2.2	176	82	5	460	31	18	22	27	1.97
37422037--37422483	222	2.0	222	91	0	716	31	18	22	27	1.97
37422031--37422471	44	9.9	44	76	7	320	32	18	22	27	1.97
37422592--37422712	42	2.9	41	77	3	118	28	15	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37422494--37422851	181	2.0	179	84	1	464	32	16	21	29	1.95
37422971--37423257	89	3.2	89	81	2	326	27	19	24	27	1.99
37423352--37423557	44	4.7	44	68	12	145	27	18	25	28	1.98
37423239--37423628	131	3.0	131	88	1	593	28	20	25	26	1.99
37432988--37433477	166	3.0	166	94	0	856	27	24	20	27	1.99
37452902--37452940	20	2.0	20	89	0	60	64	12	5	17	1.46
37453139--37453188	26	1.9	26	95	0	91	34	14	6	46	1.69
37458900--37458954	16	3.4	16	78	9	51	34	10	9	45	1.71
37459031--37459071	16	2.6	16	84	0	55	41	24	9	24	1.85
37459539--37459569	15	2.0	16	93	6	55	41	0	0	58	0.98
37467177--37467412	39	6.1	39	81	3	215	31	5	18	44	1.74
37467180--37467415	78	3.0	78	82	1	258	30	5	19	44	1.74
37467175--37467409	117	2.0	117	81	0	272	30	5	19	44	1.74
37471597--37471637	21	2.0	21	95	0	73	36	4	17	41	1.71
37471793--37471929	29	4.7	29	73	18	99	35	2	16	46	1.59
37472785--37473318	269	2.0	269	96	0	996	31	13	17	36	1.89
37473448--37473514	27	2.4	28	92	2	109	34	1	13	50	1.51
37474504--37474548	21	2.1	21	95	0	81	40	2	15	42	1.59
37475034--37475109	35	2.2	34	88	4	109	35	1	11	51	1.47
37475058--37475123	33	1.9	35	81	6	82	34	1	10	53	1.45
37475034--37475142	34	3.2	34	77	15	93	33	2	12	51	1.54
37475496--37475535	18	2.2	18	86	0	53	32	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37479135--37479233	51	1.9	51	85	0	135	28	8	16	47	1.74
37479127--37479234	17	6.4	17	71	0	81	28	9	16	45	1.78
37481840--37481889	23	2.1	23	85	3	64	18	20	16	46	1.85
37485166--37485200	6	5.8	6	96	0	61	17	14	0	68	1.21
37493878--37493926	23	2.1	23	92	0	80	44	4	30	20	1.70
37495986--37496049	32	2.0	32	90	0	101	26	25	4	43	1.74
37495986--37496035	16	3.1	16	73	21	59	26	26	6	42	1.78
37500343--37500445	39	2.6	41	89	7	135	32	13	17	36	1.89
37500357--37500445	39	2.3	39	94	1	153	31	15	15	37	1.90
37500467--37500530	32	2.0	32	90	0	101	26	25	4	43	1.74
37500467--37500516	16	3.1	16	73	21	59	26	26	6	42	1.78
37503408--37503476	28	2.5	28	80	4	86	39	23	20	17	1.92
37503635--37503699	27	2.4	27	92	2	105	33	23	23	20	1.97
37503893--37503954	26	2.3	26	83	2	88	22	19	19	38	1.93
37503902--37503952	26	1.9	27	96	4	95	25	19	19	35	1.95
37506922--37506987	29	2.3	28	84	7	89	30	3	18	48	1.63
37507352--37507421	18	3.9	17	74	9	59	25	4	21	48	1.68
37508072--37508120	17	2.9	17	78	0	53	26	8	20	44	1.79
37508770--37508808	20	2.0	20	100	0	78	41	5	15	38	1.69
37509377--37509406	15	2.0	15	100	0	60	26	26	6	40	1.81
37520506--37520535	15	2.0	15	93	0	51	30	26	6	36	1.82
37537223--37537418	107	1.8	107	82	4	252	35	10	18	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37542963--37543013	22	2.3	22	83	6	59	47	11	13	27	1.78
37545679--37545750	34	2.1	34	100	0	144	18	20	16	44	1.87
37554954--37555024	27	2.6	27	80	4	90	33	23	16	25	1.96
37560418--37560460	18	2.6	16	78	10	50	27	9	20	41	1.83
37560728--37560760	16	2.1	16	94	0	57	42	24	9	24	1.83
37567645--37567686	16	2.6	16	84	3	57	26	11	2	59	1.45
37568518--37568591	32	2.3	32	86	4	96	22	16	33	27	1.95
37569430--37569533	20	5.2	20	70	6	86	36	17	30	15	1.91
37569432--37569560	40	3.2	40	81	12	167	36	17	30	16	1.91
37581018--37581081	21	3.0	21	88	0	101	45	18	18	17	1.86
37583386--37583534	46	3.2	46	85	1	181	30	20	19	29	1.97
37585094--37585141	23	2.1	23	84	0	60	27	16	16	39	1.90
37592344--37592380	9	4.1	9	92	0	65	29	10	13	45	1.77
37594472--37594498	12	2.2	12	100	0	54	44	14	7	33	1.73
37596981--37597036	23	2.5	23	88	2	87	28	10	14	46	1.78
37597841--37597880	19	2.1	19	85	0	53	55	5	2	37	1.35
37603924--37603971	19	2.5	20	93	6	73	10	6	6	77	1.13
37603929--37603971	19	2.3	19	100	0	86	9	6	4	79	1.06
37603936--37603979	19	2.3	19	92	0	70	13	6	2	77	1.07
37605583--37605658	37	2.1	36	83	11	93	40	2	2	53	1.28
37608156--37608196	20	2.1	20	90	4	66	46	9	7	36	1.65
37610409--37610504	30	3.2	30	70	14	88	41	3	7	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37610409--37610526	61	1.9	60	89	6	184	41	3	6	48	1.46
37612814--37612897	32	2.6	32	88	0	123	15	40	23	20	1.90
37617073--37617248	45	3.9	44	81	9	196	37	28	13	20	1.91
37618680--37618733	28	1.9	28	96	0	99	14	18	38	27	1.90
37619221--37619259	20	2.0	20	90	10	62	33	10	5	51	1.58
37621585--37621665	36	2.2	36	78	4	92	29	7	25	37	1.83
37621960--37622011	17	2.9	18	80	5	61	34	9	23	32	1.87
37621952--37622014	18	3.6	18	80	4	74	33	9	26	30	1.88
37622004--37622037	17	2.0	17	94	0	59	26	0	41	32	1.56
37633871--37633912	12	3.5	12	78	12	50	21	21	0	57	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170