genome.fa.s16.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  151  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45004274--45004315	21	2.0	21	95	0	75	35	19	26	19	1.95
45017111--45017151	6	7.0	6	88	5	66	65	0	2	31	1.05
45017114--45017147	17	2.0	17	94	0	59	67	0	2	29	1.05
45026074--45026164	44	2.1	44	95	0	164	46	9	12	31	1.74
45062443--45062485	20	2.2	20	87	4	61	46	16	13	23	1.83
45067842--45067884	13	3.5	13	75	18	56	34	2	16	46	1.60
45067842--45067886	23	2.0	23	100	0	90	35	2	17	44	1.62
45083124--45083176	24	2.2	24	86	0	70	54	11	1	32	1.47
45085418--45085492	39	1.9	39	100	0	150	32	21	24	22	1.98
45093610--45093653	23	1.9	23	90	0	70	29	18	25	27	1.98
45094563--45094604	11	3.8	11	87	0	57	7	2	50	40	1.43
45096927--45097038	54	2.1	54	86	0	152	24	29	24	22	1.99
45098802--45098835	17	1.9	17	88	5	50	47	14	5	32	1.69
45103850--45103877	4	7.0	4	100	0	56	25	0	0	75	0.81
45106229--45106266	17	2.2	18	85	4	51	63	2	23	10	1.39
45110028--45110065	17	2.2	18	85	4	51	63	2	23	10	1.39
45110047--45110101	12	4.6	12	73	15	51	63	0	23	12	1.29
45111462--45111489	4	7.0	4	100	0	56	25	0	0	75	0.81
45132480--45132537	3	18.7	3	76	13	55	58	5	0	36	1.20
45132484--45132535	27	2.0	26	88	3	77	57	5	0	36	1.23
45133584--45133616	6	5.5	6	92	0	57	84	3	12	0	0.72
45135809--45135849	18	2.3	18	95	0	73	4	43	29	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45135809--45135858	18	2.8	18	87	6	57	6	42	30	22	1.77
45135821--45135877	24	2.4	24	81	0	69	12	40	24	22	1.88
45135884--45135918	18	1.9	18	88	11	54	8	40	34	17	1.80
45144581--45144651	7	10.1	7	95	0	115	14	0	9	76	1.03
45149313--45149358	24	1.9	24	90	0	74	26	26	4	43	1.73
45149316--45149369	24	2.2	24	80	0	63	27	25	3	42	1.72
45150120--45150178	28	2.1	27	96	3	109	37	27	16	18	1.93
45154015--45154213	51	4.1	50	86	10	286	29	13	24	32	1.94
45154071--45154220	44	3.2	44	87	6	183	30	13	25	31	1.94
45154511--45154543	11	2.7	13	90	9	52	45	12	6	36	1.66
45155227--45155283	30	1.9	30	85	0	78	40	7	19	33	1.78
45155642--45155915	33	7.5	33	70	20	188	20	19	27	32	1.97
45155675--45155886	42	5.5	42	72	19	226	22	18	26	32	1.97
45155638--45155921	75	3.8	75	94	0	505	21	19	27	31	1.97
45156567--45156606	20	2.0	20	95	0	71	32	15	25	27	1.95
45160936--45161056	43	2.9	42	85	4	154	28	15	27	28	1.96
45161589--45161625	15	2.5	15	95	0	65	18	8	18	54	1.68
45163320--45163612	50	5.8	50	89	0	433	20	30	22	26	1.98
45163707--45163736	13	2.3	13	94	0	51	50	13	3	33	1.58
45171057--45171097	22	2.0	21	86	13	59	39	0	2	58	1.11
45171723--45171801	35	2.4	33	83	10	92	27	1	7	63	1.29
45171810--45171960	10	15.4	9	71	15	79	60	1	4	32	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45171806--45171905	30	3.4	28	77	15	96	59	2	4	35	1.28
45171889--45171960	19	3.7	19	77	7	65	66	1	4	27	1.18
45172274--45172320	19	2.5	18	83	16	60	55	0	8	36	1.31
45172373--45172443	30	2.4	30	83	2	90	57	11	2	28	1.47
45176052--45176153	51	2.0	51	100	0	204	43	17	11	27	1.84
45178913--45179031	40	3.0	40	63	18	93	36	4	10	47	1.58
45178913--45179064	80	1.9	80	91	0	250	36	4	11	47	1.61
45179602--45179657	20	2.9	21	84	10	66	71	3	0	25	1.02
45180038--45180069	3	10.7	3	100	0	64	34	0	0	65	0.93
45182615--45182648	18	1.9	18	88	5	52	29	2	5	61	1.34
45189882--45189927	15	3.1	14	90	6	65	43	0	2	54	1.12
45189882--45189922	5	8.4	5	89	5	66	43	0	0	56	0.99
45196149--45196183	6	5.8	6	100	0	70	31	0	68	0	0.90
45197594--45197695	48	2.1	48	81	3	116	59	11	1	26	1.43
45209990--45210868	294	3.0	294	98	0	1670	32	22	10	34	1.88
45213568--45213786	111	2.0	111	82	3	271	34	11	11	42	1.78
45214426--45214450	7	3.6	7	100	0	50	0	12	12	76	1.04
45217848--45217872	5	5.0	5	100	0	50	80	0	20	0	0.72
45219004--45219029	12	2.2	12	100	0	52	34	7	7	50	1.60
45222589--45222614	7	3.7	7	100	0	52	53	0	0	46	1.00
45224924--45225031	52	2.1	51	93	5	182	30	10	22	37	1.87
45226782--45226867	28	3.1	28	84	1	120	33	23	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45233794--45233834	19	2.2	18	86	4	55	41	0	9	48	1.36
45235748--45235803	28	2.0	28	92	0	94	62	1	12	23	1.39
45245747--45245795	18	2.5	20	83	9	66	24	0	6	69	1.11
45245748--45245801	14	3.9	13	80	17	56	22	0	5	72	1.05
45245747--45245805	23	2.6	25	80	19	67	23	0	6	69	1.12
45247888--45247951	20	3.2	20	86	2	83	14	37	17	31	1.89
45252632--45252690	29	2.0	29	93	0	100	52	6	6	33	1.54
45254031--45254093	30	2.1	30	82	5	83	31	19	14	34	1.91
45255992--45256207	45	4.8	46	82	3	210	32	22	14	30	1.94
45259335--45259407	29	2.4	30	81	4	76	49	6	12	31	1.67
45265508--45265532	7	3.6	7	100	0	50	56	16	0	28	1.41
45273243--45273291	9	5.4	9	95	0	89	42	22	10	24	1.84
45273331--45273359	6	4.8	6	100	0	58	17	0	17	65	1.27
45273331--45273372	18	2.2	20	87	8	61	21	0	11	66	1.23
45273400--45273443	18	2.4	18	85	7	54	15	2	40	40	1.60
45273730--45274140	27	15.2	27	81	3	416	44	18	19	17	1.87
45273730--45274142	108	3.8	107	83	4	472	44	18	19	18	1.88
45274512--45274614	28	3.7	28	90	2	154	26	22	24	27	2.00
45276575--45276811	23	10.2	23	75	3	206	40	17	13	28	1.88
45276592--45276813	47	4.8	47	88	2	306	40	17	13	27	1.88
45276891--45277519	311	2.0	311	98	0	1204	39	17	8	33	1.81
45277530--45277644	44	2.7	43	84	9	144	30	29	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45277957--45277986	15	2.0	15	93	0	51	50	20	0	30	1.49
45282823--45282898	33	2.3	33	83	0	98	36	18	23	21	1.95
45285133--45285191	21	2.8	20	80	14	57	54	3	1	40	1.27
45285173--45285290	11	11.4	11	73	21	87	58	0	4	37	1.18
45285194--45285227	17	2.0	17	88	0	50	61	0	2	35	1.11
45285164--45285290	51	2.5	49	86	10	159	59	0	3	36	1.16
45285158--45285308	40	3.7	40	86	11	200	59	0	3	37	1.14
45285275--45285320	17	2.7	17	82	0	56	63	0	0	36	0.95
45309724--45309763	3	13.3	3	100	0	80	32	0	67	0	0.91
45325547--45325571	6	4.2	6	100	0	50	52	0	0	48	1.00
45326794--45326868	29	2.5	29	82	4	87	46	14	13	25	1.81
45326930--45326993	23	2.7	23	75	17	69	37	0	4	57	1.19
45329200--45329290	21	4.3	21	71	0	65	17	21	17	42	1.89
45329139--45329274	42	3.2	42	76	4	130	19	22	16	42	1.89
45329200--45329290	42	2.2	42	81	0	101	17	21	17	42	1.89
45334007--45334040	14	2.6	14	90	9	54	26	0	5	67	1.13
45334349--45334375	7	3.9	7	100	0	54	0	44	11	44	1.39
45336379--45336418	20	2.1	19	86	13	55	45	0	2	52	1.14
45337112--45337163	6	8.3	6	75	8	50	48	32	0	19	1.49
45337789--45337819	11	2.8	11	90	0	53	67	0	0	32	0.91
45345331--45345381	20	2.5	20	87	6	68	45	17	1	35	1.60
45347281--45347320	13	3.1	13	77	0	53	42	20	5	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45348319--45348352	17	1.9	18	88	5	52	23	0	8	67	1.18
45355677--45355715	17	2.4	16	84	16	53	30	0	2	66	1.05
45371014--45371051	18	2.1	18	90	9	60	2	28	0	68	1.03
45371100--45371138	14	2.9	14	88	3	62	25	5	0	69	1.09
45371103--45371142	19	2.2	18	90	4	62	30	2	0	67	1.04
45371119--45371158	21	2.0	21	85	9	57	37	5	0	57	1.21
45372188--45372240	27	2.0	27	84	0	70	58	13	0	28	1.35
45373509--45373703	98	2.0	98	94	0	345	36	24	10	28	1.89
45374755--45374808	19	2.8	19	100	0	108	35	16	11	37	1.84
45375143--45375605	44	10.5	44	65	15	188	29	24	17	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170