genome.fa.s16.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  52  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15128032--15128138	35	3.0	34	79	6	115	24	15	14	44	1.85
15128839--15128886	20	2.4	20	82	6	62	12	4	31	52	1.58
15140919--15140953	17	2.0	18	88	5	54	77	2	20	0	0.90
15142126--15142305	51	3.5	51	80	3	161	22	16	28	32	1.96
15142311--15142403	45	2.1	45	93	0	159	26	18	24	30	1.98
15145301--15145378	24	3.3	22	77	12	75	21	2	20	55	1.56
15145311--15145379	24	2.9	24	84	4	95	21	1	18	57	1.48
15147930--15148009	36	2.2	36	86	0	115	45	12	28	13	1.80
15147951--15148015	18	3.6	18	69	8	60	43	12	30	13	1.81
15147912--15148024	18	6.3	18	66	15	54	43	12	31	12	1.80
15149692--15149847	51	3.1	50	92	0	240	28	25	15	30	1.96
15155562--15155596	18	1.9	18	88	0	52	28	17	11	42	1.83
15169026--15169095	22	3.1	22	70	11	70	38	15	18	27	1.91
15171523--15171555	10	3.4	10	83	8	50	3	12	0	84	0.72
15171524--15171579	19	2.9	20	84	10	64	7	12	1	78	1.02
15178006--15178034	11	2.5	12	94	5	51	55	0	41	3	1.17
15180443--15180502	24	2.5	24	81	2	59	26	31	15	26	1.95
15180870--15180902	17	1.9	17	88	11	50	42	0	12	45	1.41
15186435--15186460	6	4.3	6	100	0	52	15	50	0	34	1.45
15189095--15189221	45	2.8	45	88	4	177	18	18	14	47	1.83
15189107--15189176	21	3.2	21	64	25	54	21	20	10	48	1.78
15204552--15204596	15	2.7	16	83	16	56	42	0	11	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15218028--15218079	26	2.0	26	96	0	95	13	23	34	28	1.92
15227821--15229636	23	79.8	22	70	16	893	39	17	15	27	1.90
15227798--15229638	46	40.5	45	73	11	1273	39	17	15	27	1.90
15227776--15229638	93	20.5	93	84	8	2164	39	17	15	27	1.90
15230323--15230476	28	5.5	28	90	1	229	30	24	12	32	1.92
15235572--15235618	6	7.8	6	100	0	94	51	0	31	17	1.46
15239884--15239921	15	2.6	15	84	15	53	28	36	0	34	1.58
15262713--15263090	199	1.9	197	79	10	423	44	7	15	33	1.73
15267491--15267515	12	2.1	12	100	0	50	52	8	0	40	1.31
15268096--15268169	22	3.3	22	80	1	94	25	13	18	41	1.87
15271609--15271686	24	3.5	23	72	10	72	20	15	20	43	1.88
15272584--15272679	31	3.1	31	95	3	174	45	13	9	31	1.75
15278215--15278280	10	6.8	10	67	19	50	1	16	13	68	1.29
15278231--15278288	20	2.8	20	86	2	89	1	15	12	70	1.24
15278212--15278265	28	1.9	28	88	7	83	1	14	11	72	1.21
15278214--15278316	48	2.1	48	87	7	147	0	12	13	72	1.17
15278233--15278323	20	4.6	20	77	15	82	1	12	13	73	1.15
15278869--15278964	31	3.1	31	93	3	165	45	13	10	30	1.77
15285318--15285356	18	2.0	20	85	9	55	48	5	12	33	1.63
15294715--15294782	24	3.0	22	72	8	73	19	16	20	44	1.87
15298569--15298606	11	3.5	11	82	13	51	34	15	28	21	1.94
15298667--15298700	17	2.0	17	88	0	50	20	32	17	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15301668--15301719	15	3.2	15	73	19	50	44	0	1	53	1.11
15301790--15301845	22	2.6	22	83	5	62	51	0	0	48	1.00
15301869--15301925	26	2.2	26	84	12	73	56	0	1	42	1.10
15303002--15303063	29	2.2	28	82	2	70	50	17	8	24	1.73
15306386--15306445	24	2.5	25	91	5	90	48	20	0	31	1.50
15317434--15317476	18	2.6	16	81	7	50	67	6	0	25	1.15
15318679--15318716	19	2.0	19	89	0	58	10	34	28	26	1.90
15320306--15320388	25	3.3	24	78	9	87	25	20	21	32	1.98
15333696--15333837	23	6.2	23	84	0	194	22	19	26	31	1.98
15333696--15333837	46	3.1	46	94	0	239	22	19	26	31	1.98
15338454--15338490	18	2.0	20	89	10	60	29	0	18	51	1.47
15338730--15338874	23	6.3	23	81	0	173	26	18	23	31	1.97
15338731--15338874	46	3.1	46	89	0	216	25	18	23	31	1.97
15348216--15348266	26	2.0	26	100	0	102	25	15	27	31	1.96
15348866--15348917	17	2.9	17	75	10	50	32	11	21	34	1.89
15355907--15356036	45	2.9	43	79	5	143	39	12	23	25	1.89
15358389--15358433	24	1.9	24	90	4	74	8	40	2	48	1.47
15374243--15374274	16	2.0	16	93	0	55	25	15	0	59	1.36
15374506--15374641	50	2.7	50	83	6	177	32	30	14	22	1.94
15379200--15379321	29	4.3	29	78	7	133	42	24	9	22	1.84
15379147--15379321	57	3.0	57	84	1	197	40	22	12	25	1.88
15381553--15381592	20	2.0	20	90	0	62	42	5	20	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15382390--15382469	34	2.4	34	93	0	142	37	5	43	13	1.66
15383603--15383656	23	2.3	23	100	0	108	35	3	24	37	1.73
15386367--15386509	75	1.9	75	86	0	205	32	12	25	28	1.93
15386471--15386536	32	2.1	32	91	0	105	28	10	27	33	1.90
15386499--15386711	61	3.5	61	82	2	239	35	13	25	25	1.92
15396231--15396263	14	2.5	14	90	9	52	24	9	27	39	1.85
15396177--15396364	51	3.7	49	83	4	225	25	16	28	29	1.97
15400679--15400761	36	2.3	36	95	0	148	28	20	18	32	1.96
15400715--15401034	51	6.4	50	79	8	258	29	25	13	30	1.94
15400756--15401038	51	5.6	51	82	5	308	29	25	13	30	1.94
15408040--15408123	26	3.3	26	64	21	68	30	26	11	30	1.92
15407889--15408228	51	6.7	50	85	3	389	29	25	15	29	1.96
15407885--15408224	102	3.4	102	89	2	481	30	25	15	29	1.95
15412233--15412301	29	2.3	30	87	7	97	17	27	14	40	1.88
15412233--15412312	29	2.7	29	81	12	92	20	25	13	41	1.88
15412299--15412483	30	6.2	30	72	9	112	24	21	12	41	1.88
15412198--15412483	118	2.4	117	84	5	371	23	22	13	40	1.90
15420776--15420818	20	2.2	20	83	8	52	81	6	6	4	0.98
15422258--15422299	21	2.0	21	86	9	59	28	21	33	16	1.95
15423111--15423149	21	1.9	20	84	5	51	28	2	17	51	1.59
15433294--15433430	63	2.2	62	82	3	168	21	21	29	28	1.98
15434068--15434152	44	1.9	44	82	0	107	17	16	15	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15434068--15434136	22	3.1	22	83	8	95	18	15	14	50	1.78
15435510--15435553	18	2.5	18	88	3	63	50	4	0	45	1.22
15436331--15436364	13	2.6	13	85	0	50	32	8	8	50	1.64
15438474--15438508	16	2.2	16	90	5	54	57	0	5	37	1.23
15438482--15438513	16	1.9	17	93	6	57	50	0	3	46	1.17
15438640--15438669	13	2.4	13	94	5	53	33	6	0	60	1.23
15450823--15451040	111	2.0	112	85	2	296	50	7	9	32	1.62
15451328--15451445	60	2.0	59	89	1	182	33	7	11	47	1.69
15455136--15455237	31	3.3	30	73	10	89	23	18	18	39	1.92
15465386--15465516	31	4.2	31	75	7	140	22	20	12	44	1.85
15465386--15465516	62	2.1	62	83	5	158	22	20	12	44	1.85
15468887--15469369	31	15.7	31	87	1	607	31	9	16	42	1.80
15468887--15469370	92	5.3	92	88	1	605	31	9	16	42	1.80
15469494--15469609	43	2.7	43	98	0	223	31	14	28	25	1.95
15475744--15475823	40	2.0	40	100	0	160	22	7	17	52	1.69
15476055--15476122	30	2.4	26	77	17	73	42	7	23	26	1.80
15476283--15476672	31	12.7	30	83	3	429	31	10	17	41	1.82
15476283--15476672	61	6.4	61	82	2	449	31	10	17	41	1.82
15476283--15476672	123	3.2	122	82	5	419	31	10	17	41	1.82
15476282--15476672	92	4.3	91	85	2	485	30	9	17	41	1.82
15476793--15476861	16	4.2	16	96	3	129	24	0	37	37	1.56
15476793--15476861	33	2.1	32	97	2	129	24	0	37	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15476842--15476932	45	2.0	45	85	2	121	27	6	28	37	1.82
15477097--15477131	18	2.0	17	88	5	52	54	0	0	45	0.99
15477196--15477247	15	3.6	15	80	12	56	53	1	0	44	1.11
15477080--15477372	120	2.4	121	94	1	509	50	5	2	42	1.37
15477313--15477595	91	3.0	93	84	7	317	48	3	3	44	1.35
15477413--15477473	28	2.2	28	85	5	81	50	3	0	45	1.17
15477420--15477563	47	3.1	46	65	23	113	49	4	2	44	1.33
15477388--15477595	91	2.3	90	90	4	326	46	4	3	45	1.39
15477413--15477555	44	3.2	43	68	16	119	48	3	2	46	1.31
15477438--15477576	47	3.0	47	68	17	137	49	4	2	43	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170