genome.fa.s16.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  145  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43588599--43588714	59	2.0	59	89	1	180	42	5	7	44	1.55
43588915--43588960	19	2.4	19	88	0	65	65	6	6	21	1.39
43588927--43588975	13	3.8	13	81	5	55	67	10	2	20	1.30
43589026--43589066	20	2.0	20	90	0	64	65	4	7	21	1.37
43590637--43590851	104	2.0	105	84	4	281	32	14	14	38	1.87
43595143--43595188	21	2.2	21	81	11	51	32	10	0	56	1.34
43598137--43598303	43	3.9	43	80	3	156	28	25	21	25	1.99
43598684--43598755	21	3.4	21	81	14	94	2	47	16	33	1.61
43604232--43604504	9	30.9	9	79	9	294	32	1	19	47	1.57
43604514--43604614	20	5.2	20	73	15	95	40	4	5	48	1.49
43604494--43604654	57	2.8	57	90	4	261	39	5	7	47	1.55
43604723--43604821	20	5.2	20	69	16	84	40	5	7	47	1.53
43604691--43604860	57	3.0	56	91	3	270	39	5	8	46	1.58
43604691--43604847	55	2.8	55	93	1	242	40	5	8	46	1.56
43604704--43604905	112	1.8	112	83	2	271	41	4	9	44	1.58
43604495--43604956	206	2.2	209	98	1	885	41	4	9	44	1.59
43607284--43607342	21	2.8	21	84	0	73	45	28	1	23	1.63
43607888--43608483	114	5.2	114	86	2	734	23	19	19	37	1.94
43610495--43610547	23	2.3	23	84	12	65	39	0	0	60	0.97
43612751--43612793	16	2.5	17	77	7	52	30	9	9	51	1.65
43614856--43614894	19	2.1	19	85	9	53	76	7	0	15	0.99
43615112--43615156	24	1.9	23	86	4	63	15	0	13	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43615365--43615440	40	1.9	40	83	5	100	35	5	7	51	1.54
43618828--43618861	12	2.8	12	90	0	50	0	29	44	26	1.55
43620500--43621063	154	3.7	151	84	8	739	30	10	7	51	1.64
43621268--43621321	26	2.0	27	85	3	74	57	7	3	31	1.44
43621388--43621448	24	2.5	24	76	5	61	1	34	0	63	1.04
43621388--43621463	24	3.2	23	70	17	57	1	35	0	63	1.03
43627169--43627444	138	2.0	138	99	0	543	35	11	25	27	1.90
43628932--43628971	20	2.0	20	85	0	53	25	12	12	50	1.75
43629136--43629190	24	2.3	25	82	17	64	61	3	0	34	1.13
43629923--43629987	32	2.1	31	91	2	103	49	10	9	30	1.69
43635517--43635547	12	2.6	12	89	0	53	0	12	16	70	1.16
43635541--43635574	13	2.5	14	90	4	52	0	17	2	79	0.86
43638556--43638594	19	2.1	19	90	0	60	12	7	20	58	1.58
43638735--43638786	26	2.1	24	85	7	68	28	3	25	42	1.72
43639167--43639202	18	2.0	18	88	0	54	36	8	8	47	1.64
43640894--43640961	19	3.7	17	80	11	64	32	1	4	61	1.24
43640918--43640967	10	5.2	10	77	15	52	30	0	2	68	1.01
43646505--43646556	26	2.1	24	85	7	68	28	3	25	42	1.72
43646724--43646756	17	1.9	17	88	11	50	45	0	0	54	0.99
43646935--43646970	18	2.0	18	88	0	54	36	8	8	47	1.64
43651043--43651073	13	2.4	13	88	0	53	16	6	0	77	0.97
43653633--43653760	41	3.1	41	84	6	136	34	27	18	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43653688--43653790	41	2.5	41	91	0	170	35	22	17	24	1.95
43659647--43659827	64	2.9	63	89	6	253	41	17	7	32	1.78
43659896--43659939	20	2.1	21	84	12	56	38	13	2	45	1.56
43660892--43660948	28	2.0	28	90	6	89	38	5	0	56	1.22
43671639--43671842	41	5.0	41	90	0	309	24	26	18	29	1.98
43671633--43671849	82	2.6	82	92	1	364	24	27	18	29	1.98
43675361--43675436	7	11.0	7	72	13	50	46	13	0	40	1.43
43675336--43675435	49	2.0	49	98	0	191	49	13	0	38	1.42
43675361--43675436	13	5.5	14	65	13	50	46	13	0	40	1.43
43680193--43680226	7	5.0	7	92	7	61	44	11	0	44	1.40
43683787--43683840	26	2.1	26	100	0	108	35	25	3	35	1.74
43685066--43685121	28	2.0	29	86	6	80	32	1	3	62	1.23
43686967--43687207	50	4.7	50	87	6	306	21	29	22	26	1.99
43693237--43693304	28	2.4	28	82	0	91	22	17	25	35	1.95
43693238--43693325	28	3.1	28	81	0	77	22	19	22	35	1.96
43693704--43693737	15	2.3	15	94	0	59	70	0	8	20	1.13
43696572--43696610	17	2.2	18	90	4	62	0	33	5	61	1.18
43696569--43696614	18	2.5	19	82	10	69	0	30	6	63	1.20
43704170--43704195	2	13.0	2	100	0	52	0	50	0	50	1.00
43705785--43705809	4	6.2	4	100	0	50	28	48	0	24	1.52
43706971--43707018	8	6.6	8	86	13	52	56	12	6	25	1.59
43707040--43707090	9	5.7	9	85	0	66	27	11	15	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43712131--43712202	16	4.4	16	68	10	56	48	1	2	47	1.25
43713792--43713826	8	4.2	8	92	7	61	48	17	0	34	1.47
43713791--43713824	17	2.0	17	100	0	68	47	17	0	35	1.48
43714560--43714789	69	3.2	69	72	10	212	29	9	3	58	1.44
43715117--43715164	25	1.9	25	82	0	60	10	22	16	50	1.76
43718738--43719102	125	2.9	124	86	3	484	30	21	16	30	1.96
43722762--43723427	153	4.4	153	86	6	929	51	8	9	30	1.63
43722762--43723427	308	2.2	304	88	5	995	51	8	9	30	1.63
43726416--43726456	19	2.2	19	95	0	73	46	14	24	14	1.82
43726869--43727047	89	2.0	89	93	0	304	40	25	8	25	1.84
43727641--43727754	57	2.0	59	96	3	214	41	17	16	24	1.90
43730532--43730613	42	2.0	42	85	0	110	48	10	15	24	1.77
43730891--43730933	20	2.0	22	86	8	63	44	11	6	37	1.68
43735733--43735778	24	1.9	24	90	0	74	34	2	8	54	1.43
43736030--43736099	34	2.1	34	100	0	140	20	17	2	60	1.49
43737113--43737148	17	2.1	17	89	0	54	47	11	8	33	1.69
43737689--43737741	24	2.2	24	89	0	79	33	1	9	54	1.43
43740539--43740567	7	4.1	7	100	0	58	41	13	17	27	1.87
43747398--43747475	32	2.5	31	79	8	86	43	1	11	43	1.48
43756355--43756428	29	2.4	28	80	17	76	32	0	5	62	1.18
43756418--43756476	24	2.4	25	83	8	77	28	0	0	71	0.87
43756416--43756454	12	3.3	11	83	16	51	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43757825--43758017	34	5.6	33	79	8	163	34	19	16	30	1.93
43757873--43758017	67	2.2	67	80	5	159	36	17	15	31	1.90
43759199--43759244	9	5.1	9	89	0	65	60	2	0	36	1.09
43762046--43762079	17	2.0	17	88	0	50	52	14	11	20	1.73
43770005--43770061	30	1.9	30	85	3	80	42	3	24	29	1.71
43770400--43770592	50	3.8	50	84	0	260	26	22	30	20	1.99
43775194--43775245	23	2.3	23	83	9	63	30	5	5	57	1.46
43777900--43777930	3	10.3	3	92	0	53	61	0	3	35	1.12
43778994--43779052	11	5.3	11	74	11	57	66	1	0	32	1.02
43778994--43779022	12	2.5	12	94	5	51	68	0	0	31	0.89
43801481--43801536	21	2.7	21	81	8	62	64	0	3	32	1.11
43807046--43807106	26	2.3	27	75	13	65	59	1	3	36	1.24
43810321--43810351	2	15.5	2	100	0	62	48	0	0	51	1.00
43811585--43811652	27	2.5	27	82	0	82	16	22	36	25	1.94
43815439--43815470	3	10.7	3	100	0	64	68	0	31	0	0.90
43826208--43826352	58	2.4	61	80	11	158	42	2	3	52	1.30
43839260--43839315	24	2.3	24	78	9	60	67	5	3	23	1.27
43840948--43841860	44	19.9	43	71	12	441	29	19	16	34	1.94
43840992--43841745	139	5.4	140	79	8	639	29	19	16	34	1.94
43840946--43841725	95	8.4	95	77	9	555	29	19	16	34	1.94
43841326--43841725	191	2.1	191	90	0	613	30	18	16	34	1.93
43848091--43848332	42	5.7	41	76	6	173	24	17	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43848713--43848763	21	2.4	21	86	0	75	1	49	17	31	1.58
43850156--43850207	26	2.0	26	96	0	95	13	23	34	28	1.92
43850078--43850448	104	3.6	105	94	2	633	18	20	30	30	1.97
43854955--43855058	45	2.3	44	80	11	113	42	18	7	31	1.78
43855167--43855245	39	2.0	38	85	9	106	51	21	11	15	1.74
43856567--43856593	12	2.2	12	100	0	54	40	0	0	59	0.98
43857155--43857196	22	1.9	22	95	0	75	47	35	0	16	1.47
43857484--43858113	228	2.8	228	87	1	825	28	22	16	32	1.95
43857484--43858153	114	5.9	114	82	2	693	28	22	16	32	1.95
43857499--43858153	342	1.9	340	81	4	773	29	22	16	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170