genome.fa.s16.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  38  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10632164--10632651	87	5.6	88	80	1	523	23	26	23	26	2.00
10633911--10633963	20	2.5	21	81	6	63	7	20	1	69	1.22
10633918--10633947	13	2.3	13	94	0	51	10	20	0	70	1.16
10634854--10634907	27	2.1	27	83	13	69	9	9	11	70	1.34
10639965--10640000	16	2.3	15	90	4	54	61	2	8	27	1.39
10639965--10640019	28	2.0	26	82	6	65	61	3	5	29	1.35
10640204--10640241	18	2.2	17	86	9	51	68	2	13	15	1.32
10640471--10640509	11	3.6	11	86	3	53	82	7	2	7	0.94
10642610--10642829	115	1.9	112	87	3	291	52	10	6	30	1.61
10653732--10653837	32	3.3	32	82	6	133	34	9	11	44	1.73
10654763--10654796	17	1.9	17	88	5	50	61	11	8	17	1.54
10654748--10654796	18	2.8	17	78	6	53	61	12	8	18	1.55
10662590--10662639	8	6.4	8	75	11	50	54	28	2	16	1.53
10662592--10662623	15	2.2	14	94	5	55	53	31	0	15	1.43
10664198--10664254	3	20.0	3	76	16	59	68	3	0	28	1.06
10664198--10664261	15	4.1	16	78	11	71	65	3	0	31	1.08
10671154--10671183	10	3.1	10	90	9	53	10	0	16	73	1.09
10671580--10671782	89	2.3	89	85	0	262	24	23	23	29	1.99
10671572--10671827	134	1.9	133	83	0	332	23	23	21	32	1.98
10671580--10671834	45	5.7	45	75	3	212	23	22	21	31	1.98
10671945--10672542	50	11.9	50	76	2	385	24	19	22	32	1.97
10671942--10672548	100	6.0	100	81	4	603	24	19	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10671944--10672540	150	4.0	150	83	1	485	24	19	22	32	1.97
10676631--10676687	24	2.4	24	82	8	64	43	5	22	28	1.75
10680023--10680052	10	3.1	10	90	9	53	10	0	16	73	1.09
10687418--10687456	21	1.9	20	84	5	51	38	0	5	56	1.22
10689199--10689255	29	2.0	28	93	3	96	52	5	21	21	1.66
10694996--10695671	234	2.9	234	94	0	1149	25	15	16	42	1.88
10699823--10699857	6	5.8	6	96	0	61	62	20	0	17	1.32
10717921--10718078	33	4.8	32	74	8	136	29	25	14	30	1.95
10717906--10718145	101	2.4	101	94	0	426	27	24	15	32	1.96
10717921--10718110	33	5.6	34	74	8	129	28	26	15	29	1.96
10722204--10722237	16	2.1	16	89	10	52	76	8	8	5	1.15
10722786--10722822	14	2.8	13	92	8	65	45	5	10	37	1.62
10722803--10722859	22	2.7	20	79	12	60	45	5	8	40	1.58
10722820--10722863	22	2.0	22	95	0	79	50	4	6	38	1.50
10722862--10722904	22	2.0	22	86	9	61	37	6	20	34	1.80
10723098--10723178	34	2.4	34	85	8	119	20	23	14	40	1.90
10725986--10726031	21	2.1	23	84	15	62	13	8	8	69	1.36
10734386--10734426	21	1.9	22	85	5	57	46	9	12	31	1.74
10734385--10734432	21	2.2	22	77	3	53	54	8	10	27	1.63
10734458--10734502	21	2.1	23	88	12	69	68	8	8	13	1.38
10741714--10742117	218	1.9	218	93	1	693	28	25	19	26	1.99
10741832--10742119	44	6.6	44	71	11	162	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10742105--10742524	128	3.3	129	90	1	655	25	22	19	32	1.97
10744657--10744718	6	10.7	6	77	16	51	14	3	11	70	1.27
10744623--10744735	40	2.8	38	81	10	129	11	5	6	76	1.12
10744648--10744720	34	2.1	35	87	5	103	15	2	9	72	1.21
10758068--10758119	18	2.9	17	80	11	52	36	0	3	59	1.16
10761731--10761757	14	1.9	14	100	0	54	14	25	22	37	1.93
10766083--10766120	5	7.6	5	100	0	76	36	0	0	63	0.95
10770298--10770483	35	5.3	35	82	0	210	39	28	15	17	1.89
10783615--10783722	44	2.5	44	75	3	110	23	24	24	28	1.99
10783667--10783912	129	1.9	129	89	3	379	24	23	21	30	1.99
10784037--10784391	87	4.1	87	87	0	451	25	22	20	30	1.98
10786447--10786485	13	2.9	13	88	11	53	0	25	0	74	0.82
10791693--10791733	16	2.4	17	88	8	57	65	0	7	26	1.18
10792502--10792534	7	4.6	7	96	3	57	84	0	3	12	0.72
10794452--10794504	25	2.1	25	92	0	88	37	5	7	49	1.55
10795174--10795761	89	6.7	88	76	9	431	32	14	13	40	1.84
10795185--10795522	178	1.9	175	86	4	482	31	15	13	40	1.85
10795621--10795842	84	2.7	82	79	8	218	30	13	11	45	1.78
10819648--10819683	7	5.0	7	86	6	54	44	38	0	16	1.48
10819651--10819682	15	2.1	15	94	0	55	50	34	0	15	1.45
10824418--10824482	32	2.0	32	96	0	121	36	12	16	33	1.87
10828444--10828477	17	2.0	17	88	11	52	44	0	8	47	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10828903--10829051	74	2.0	74	92	0	244	30	18	20	30	1.96
10834347--10834385	17	2.2	18	95	4	71	10	30	48	10	1.70
10837075--10837123	23	2.1	23	100	0	98	26	28	8	36	1.85
10841230--10841277	23	2.1	23	96	0	87	45	16	0	37	1.48
10841388--10841424	19	1.9	19	88	0	56	29	29	24	16	1.96
10844083--10844144	30	2.1	30	100	0	124	37	3	9	50	1.52
10846019--10846091	32	2.2	34	80	7	87	13	12	12	61	1.57
10864378--10864425	6	8.3	6	81	4	55	20	0	2	77	0.88
10869425--10869452	13	2.2	13	100	0	56	25	0	21	53	1.46
10874464--10874512	19	2.5	20	78	18	59	18	0	18	63	1.32
10874461--10874499	17	2.2	18	86	4	53	23	0	15	61	1.33
10882936--10883035	39	2.6	38	81	10	123	50	10	3	37	1.51
10889521--10889669	40	3.7	40	84	1	174	19	14	28	36	1.92
10889937--10889980	21	2.1	21	95	0	79	31	18	18	31	1.95
10890248--10890277	11	2.9	10	90	9	51	10	6	13	70	1.34
10899154--10899254	50	2.0	50	86	3	141	26	17	19	35	1.95
10904257--10904305	20	2.5	20	83	10	64	32	16	10	40	1.82
10908158--10908307	3	48.3	3	72	19	89	28	2	5	64	1.29
10914705--10914748	22	2.0	22	90	0	70	63	4	0	31	1.14
10915503--10915600	50	1.9	51	82	13	123	29	4	4	62	1.32
10916197--10916242	22	2.1	21	84	11	58	52	4	8	34	1.52
10917575--10917620	16	2.6	17	83	10	58	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10938932--10939077	45	3.2	45	88	3	213	41	19	17	20	1.90
10938932--10939104	45	4.2	39	84	6	116	39	20	19	20	1.92
10939279--10939366	39	2.2	39	85	2	113	37	19	6	36	1.78
10940022--10940076	8	6.8	8	76	12	58	61	1	0	36	1.06
10945332--10945393	31	2.0	31	96	0	115	30	11	16	41	1.83
10956537--10956569	14	2.4	14	94	0	57	63	12	3	21	1.41
10959840--10959914	28	2.7	29	85	4	100	32	12	26	29	1.92
10959839--10959937	28	3.6	27	77	11	94	32	12	26	29	1.92
10960924--10961399	47	10.1	47	84	3	476	26	11	17	44	1.83
10960962--10961399	141	3.1	141	87	3	562	26	11	17	44	1.83
10967807--10967905	28	3.5	28	79	4	92	32	11	27	29	1.91
10968891--10969370	47	10.2	47	89	1	552	25	12	17	44	1.83
10968891--10969365	141	3.4	140	91	2	668	25	12	17	44	1.84
10971700--10971733	17	2.0	17	88	0	50	35	11	8	44	1.72
10976748--10976785	17	2.2	17	90	0	58	34	7	18	39	1.80
10982139--10982295	43	3.7	43	78	8	169	31	26	19	22	1.98
10982178--10982257	42	1.9	42	89	0	124	35	28	21	15	1.93
10982732--10982804	21	3.5	21	90	0	110	8	36	16	38	1.79
10982732--10982824	21	4.4	21	84	2	107	7	39	16	36	1.77
10985598--10985636	12	3.2	12	82	7	51	38	15	7	38	1.76
10985866--10985900	18	1.9	18	94	0	61	37	20	31	11	1.88
10986700--10986737	20	1.9	20	94	0	67	57	7	0	34	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10986925--10986982	21	2.7	22	71	28	61	36	3	0	60	1.14
10986936--10986971	15	2.3	16	90	4	56	36	2	0	61	1.11
10987109--10987154	21	2.2	21	88	7	67	50	32	0	17	1.47
10987130--10987168	14	2.8	14	84	0	51	48	28	0	23	1.51
10987249--10987291	22	2.0	22	90	4	70	51	30	2	16	1.57
10988043--10988541	115	4.4	113	83	3	606	23	20	20	36	1.95
10988063--10988501	228	1.9	230	86	2	634	24	19	20	36	1.95
10992565--10992616	22	2.5	21	84	6	61	25	0	5	69	1.10
10998024--10998061	13	3.0	13	92	3	60	15	13	31	39	1.86
10998394--10998539	27	5.4	27	82	1	123	23	23	10	41	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170