genome.fa.s16.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  146  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43861659--43861691	11	2.8	12	90	9	50	48	0	0	51	1.00
43862265--43862325	31	2.0	32	83	6	81	32	9	3	54	1.50
43862265--43862333	29	2.3	30	80	11	72	33	8	4	53	1.51
43865453--43865501	14	3.4	14	78	10	55	71	0	24	4	1.03
43866360--43866401	22	2.0	21	90	4	66	57	0	2	40	1.12
43866361--43866407	17	2.8	17	75	18	53	55	0	2	42	1.12
43868790--43868882	48	1.9	48	85	8	127	18	12	27	40	1.87
43869678--43869717	19	2.1	19	85	4	53	37	7	5	50	1.53
43873124--43873541	44	9.3	44	74	7	372	27	23	17	31	1.97
43873077--43873541	44	10.3	44	73	7	342	27	23	18	30	1.97
43873057--43873543	89	5.4	90	89	3	673	27	24	17	31	1.97
43886803--43886848	3	15.3	3	90	0	74	32	2	2	63	1.19
43887154--43887200	21	2.2	22	81	11	53	44	4	0	51	1.21
43889380--43889408	15	2.0	15	93	6	51	68	0	0	31	0.89
43891774--43891809	18	2.0	18	88	0	54	33	19	2	44	1.65
43891832--43891865	17	2.1	16	88	5	50	73	2	2	20	1.09
43908781--43908846	9	7.4	9	71	20	50	37	4	1	56	1.29
43910561--43910601	3	13.7	3	100	0	82	65	0	0	34	0.93
43910911--43910957	24	2.0	23	84	16	60	44	2	2	51	1.25
43915390--43915442	26	2.0	27	96	3	99	39	3	7	49	1.49
43919504--43919533	14	2.1	14	100	0	60	0	20	0	80	0.72
43927197--43927270	3	25.0	3	80	13	82	31	1	4	63	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43927369--43927419	26	2.0	27	81	14	63	41	9	0	49	1.36
43941814--43941848	18	2.0	17	88	5	52	45	0	0	54	0.99
43941694--43941975	42	7.1	41	66	20	134	43	2	4	50	1.35
43941694--43941981	119	2.4	120	94	2	492	43	2	4	50	1.34
43941933--43941967	18	2.0	17	88	5	52	45	0	0	54	0.99
43941921--43942195	147	1.9	149	95	1	500	46	2	3	46	1.35
43942080--43942114	18	2.0	17	88	5	52	45	0	0	54	0.99
43942276--43942370	45	2.1	45	86	1	129	33	26	5	34	1.79
43942351--43942402	16	3.2	16	91	0	77	36	34	0	28	1.58
43943236--43943260	6	4.2	6	100	0	50	16	0	36	48	1.46
43945182--43945226	18	2.5	17	85	10	54	57	2	0	40	1.11
43947652--43947710	7	8.4	7	75	14	50	27	11	27	33	1.92
43947623--43947703	35	2.4	34	89	2	117	23	7	32	37	1.83
43950907--43950937	2	15.5	2	100	0	62	51	0	48	0	1.00
43951082--43951170	25	3.1	30	81	15	116	26	25	5	41	1.77
43951092--43951138	15	3.1	15	70	11	51	27	23	8	40	1.83
43955735--43955795	30	2.0	31	93	3	106	26	26	6	40	1.80
43955745--43955791	15	3.1	15	70	11	51	27	23	8	40	1.83
43955745--43955820	25	2.8	25	86	9	89	26	19	7	46	1.77
43958683--43958708	11	2.4	11	100	0	52	50	7	23	19	1.73
43961687--43961722	18	2.1	18	89	5	56	50	19	0	30	1.48
43961675--43961764	24	3.8	24	80	10	114	46	25	0	27	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43961743--43962541	28	29.7	31	72	25	243	46	24	0	28	1.55
43961698--43962551	23	32.1	27	76	19	600	47	23	0	28	1.55
43961874--43962559	235	2.9	235	93	4	1108	46	24	0	28	1.54
43962060--43962128	33	2.1	34	97	2	131	49	21	0	28	1.50
43965652--43965854	84	2.4	84	97	0	379	31	24	21	23	1.98
43965787--43966020	126	1.9	125	87	4	346	33	23	14	28	1.94
43965764--43966030	126	2.1	125	84	4	342	31	24	14	29	1.95
43972306--43972629	109	3.0	109	90	1	508	33	18	17	30	1.94
43973842--43973867	13	2.0	13	100	0	52	92	0	7	0	0.39
43974893--43975090	41	4.6	42	74	13	154	26	21	23	27	1.99
43974839--43975178	130	2.5	132	86	4	441	23	21	22	32	1.98
43978101--43978152	21	2.4	22	84	12	72	61	1	0	36	1.07
43986764--43987057	105	2.8	106	88	3	441	34	18	17	29	1.94
43990716--43990892	64	2.8	64	88	6	238	32	7	17	41	1.78
43991002--43991120	41	2.9	41	94	0	211	29	20	29	21	1.98
43992993--43993061	33	2.1	33	97	0	129	39	26	8	26	1.85
43996090--43996135	22	2.1	22	84	15	60	43	19	6	30	1.76
43999517--43999547	15	2.1	15	100	0	62	41	6	19	32	1.77
44001685--44001757	36	2.0	36	97	0	137	42	6	8	42	1.61
44002975--44003020	18	2.5	19	86	13	62	32	30	0	36	1.58
44006713--44006905	50	3.7	50	85	4	233	25	21	29	23	1.99
44006769--44006944	50	3.6	48	81	3	147	28	22	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44013324--44013618	147	2.0	147	99	0	581	34	20	5	39	1.76
44014116--44014308	50	3.8	50	86	0	251	21	30	22	25	1.99
44017811--44017836	3	8.7	3	100	0	52	34	0	0	65	0.93
44020237--44020291	23	2.4	24	84	9	78	47	0	0	52	1.00
44026738--44026798	23	2.5	23	89	7	86	49	0	0	50	1.00
44026762--44026801	10	3.7	10	81	18	53	45	0	0	55	0.99
44026743--44026816	33	2.2	32	79	9	78	47	0	0	52	1.00
44026754--44026795	14	3.4	13	78	21	54	50	0	0	50	1.00
44026754--44026799	23	2.0	23	100	0	92	47	0	0	52	1.00
44029928--44030000	31	2.4	31	86	2	94	50	17	9	21	1.74
44032491--44032523	17	1.9	17	93	0	57	27	6	3	63	1.32
44032496--44032531	17	2.1	17	89	5	54	27	8	5	58	1.50
44032662--44032690	13	2.1	14	93	6	51	75	0	6	17	1.01
44041162--44041214	7	8.0	7	80	14	51	22	1	1	73	1.03
44041165--44041207	20	2.1	21	91	4	70	20	0	2	76	0.89
44041362--44041416	22	2.5	21	82	5	56	25	45	9	20	1.80
44042529--44042570	17	2.4	18	76	19	52	73	2	0	23	0.94
44042533--44042568	16	2.2	17	90	5	56	72	2	0	25	0.98
44043149--44043183	15	2.4	15	90	4	54	48	0	8	42	1.33
44046513--44046618	43	2.5	43	79	0	113	23	17	28	30	1.97
44049592--44049651	25	2.4	25	88	0	84	36	5	21	36	1.76
44056466--44056609	64	2.2	64	90	0	225	34	11	15	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44056382--44056630	32	8.0	32	74	5	163	34	8	14	42	1.77
44056769--44056854	41	2.1	41	95	0	154	30	16	22	31	1.95
44056769--44056867	41	2.4	41	91	0	144	28	17	24	30	1.97
44057651--44057683	17	2.0	17	88	5	50	33	0	21	45	1.52
44065064--44065196	40	3.5	40	76	10	150	32	21	24	21	1.98
44065025--44065196	75	2.3	75	89	2	256	31	21	25	21	1.98
44065026--44065167	35	3.9	35	76	12	117	32	23	25	19	1.97
44065025--44065242	75	2.9	76	80	4	217	31	22	25	21	1.98
44065569--44065650	35	2.3	35	97	0	155	36	13	31	18	1.89
44068360--44068403	18	2.4	18	85	7	54	54	6	0	38	1.27
44068518--44068575	29	2.1	27	81	18	66	68	1	5	24	1.19
44068644--44068682	15	2.5	15	88	12	53	76	0	2	20	0.90
44068777--44068813	18	2.1	18	94	0	65	70	2	5	21	1.20
44070252--44070308	26	2.3	24	78	6	60	22	1	17	57	1.49
44071607--44071656	19	2.6	20	84	12	61	34	2	8	56	1.40
44075188--44075244	30	1.9	29	82	3	69	24	3	8	63	1.39
44078788--44078849	31	2.0	33	87	9	94	30	4	3	61	1.33
44078846--44078904	26	2.3	26	80	5	68	44	3	1	50	1.28
44078871--44078922	23	2.3	23	83	12	63	36	0	7	55	1.29
44081756--44081815	23	2.7	22	77	12	61	1	13	28	56	1.47
44081756--44081815	22	2.7	23	77	12	63	1	13	28	56	1.47
44082700--44083117	87	4.8	87	90	0	658	25	23	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44084334--44084387	22	2.5	22	82	11	67	14	20	0	64	1.28
44084334--44084397	21	3.0	21	78	13	60	12	20	0	67	1.23
44084750--44084819	25	2.8	25	78	10	70	5	10	7	77	1.13
44084782--44084818	19	1.9	20	88	5	58	5	5	8	81	0.99
44086162--44086254	39	2.5	37	80	7	98	27	29	22	20	1.98
44086423--44086468	23	2.0	24	82	4	58	32	26	0	41	1.56
44086608--44086653	3	15.3	3	90	0	74	63	2	2	32	1.19
44086920--44086966	22	2.0	23	84	12	60	29	27	0	42	1.56
44087364--44087403	17	2.3	17	91	4	62	5	12	7	75	1.18
44087419--44087450	16	1.9	17	93	6	57	53	3	0	43	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170