genome.fa.s16.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  129  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39248153--39248188	3	12.0	3	87	0	54	30	2	2	63	1.22
39248197--39248245	20	2.4	21	90	6	75	30	4	2	63	1.24
39248198--39248253	22	2.5	22	82	5	69	32	8	1	57	1.40
39248515--39248550	18	2.1	17	89	5	54	13	5	8	72	1.27
39248658--39249314	110	6.0	110	93	1	1095	31	15	19	33	1.93
39253368--39253406	6	6.3	6	83	16	53	79	0	20	0	0.73
39255451--39255678	46	5.0	46	95	0	384	25	17	27	29	1.97
39255674--39255962	132	2.2	132	89	2	438	33	19	20	26	1.96
39256277--39256318	22	1.9	22	90	0	66	52	40	4	2	1.35
39257445--39257480	3	12.0	3	87	0	54	30	2	2	63	1.22
39257616--39257693	39	2.0	39	82	0	93	34	8	5	51	1.56
39257851--39257886	18	2.1	17	89	5	54	13	5	8	72	1.27
39257994--39258541	110	5.0	110	92	1	891	30	15	20	33	1.94
39257994--39258541	222	2.5	220	92	1	902	30	15	20	33	1.94
39260008--39260130	63	2.0	63	86	0	174	34	32	8	23	1.86
39261769--39261918	38	4.0	37	88	6	196	11	21	30	37	1.88
39261830--39261902	22	3.6	21	70	21	66	10	21	28	38	1.88
39261768--39261920	76	2.0	75	87	3	218	12	20	29	37	1.90
39263765--39263957	50	3.8	50	89	0	269	24	22	31	21	1.98
39268643--39268759	38	3.1	38	85	1	146	12	21	28	37	1.90
39270163--39270269	55	1.9	55	92	0	178	40	13	8	38	1.74
39273513--39273622	55	2.0	55	92	0	184	39	12	9	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39278736--39278812	31	2.5	31	93	2	127	38	2	6	51	1.41
39283774--39284137	192	1.9	189	85	2	496	31	10	14	43	1.79
39292266--39292318	26	2.0	27	89	10	83	30	24	20	24	1.99
39298758--39298829	22	3.3	22	75	11	67	23	27	15	33	1.95
39307789--39307936	43	3.4	44	81	8	178	27	17	25	29	1.97
39310972--39311014	9	4.9	9	83	13	54	23	0	0	76	0.78
39310982--39311012	16	1.9	16	93	0	53	25	0	0	74	0.82
39312180--39312223	21	2.1	21	83	8	54	77	2	11	9	1.08
39313076--39313133	30	1.9	30	85	0	80	20	39	29	10	1.86
39315962--39316047	42	2.0	42	84	4	111	34	3	19	41	1.69
39316522--39316609	45	2.0	45	90	0	140	60	11	11	17	1.59
39327871--39327919	22	2.2	22	82	7	55	42	0	4	53	1.20
39330874--39330931	30	1.9	30	82	0	71	20	34	0	44	1.52
39333329--39333371	19	2.3	18	84	15	52	62	0	0	37	0.95
39334008--39334103	19	4.7	21	79	10	74	40	15	6	37	1.73
39334008--39334065	22	2.6	22	81	7	64	41	17	5	36	1.72
39334044--39334116	19	3.8	19	92	0	128	36	15	9	38	1.80
39334708--39334857	43	3.5	42	68	20	119	30	22	16	31	1.95
39334690--39334869	88	2.0	88	98	0	351	32	20	18	28	1.96
39334479--39334804	132	2.5	132	91	0	526	30	23	17	29	1.97
39334556--39335011	220	2.1	220	94	0	804	30	22	18	28	1.97
39334690--39334900	88	2.4	88	93	0	332	31	22	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39334776--39335555	132	5.9	132	94	0	1353	29	23	18	28	1.98
39334479--39335133	352	1.9	352	94	0	1157	29	23	18	28	1.97
39336957--39336989	14	2.3	15	89	5	50	27	30	15	27	1.96
39344636--39344670	17	2.1	17	89	5	54	14	28	0	57	1.38
39345243--39345285	22	2.0	22	81	9	52	58	2	6	32	1.38
39345520--39345579	4	13.8	4	80	16	66	46	0	5	48	1.24
39345520--39345579	14	4.5	13	88	12	79	46	0	5	48	1.24
39346921--39346971	23	2.2	23	96	0	93	39	27	7	25	1.83
39348023--39348133	19	5.8	19	86	0	168	40	9	12	37	1.75
39348030--39348133	38	2.7	38	100	0	208	41	8	11	38	1.72
39348023--39348159	19	6.9	21	84	4	105	39	8	13	38	1.75
39351554--39351599	24	1.9	24	82	8	58	13	19	2	65	1.37
39354135--39354192	27	2.1	27	81	12	66	63	1	27	6	1.29
39354547--39354588	20	2.0	21	86	13	61	30	9	0	59	1.29
39365778--39365811	17	2.0	17	100	0	68	41	23	5	29	1.78
39366120--39366191	37	1.9	37	97	0	135	37	13	19	29	1.90
39366138--39366714	104	5.6	104	83	2	642	33	15	19	31	1.93
39366138--39366714	207	2.8	205	82	5	662	33	15	19	31	1.93
39373008--39373055	16	2.9	16	84	12	62	8	20	0	70	1.12
39375179--39375216	15	2.4	16	91	4	60	26	7	5	60	1.46
39376800--39376861	20	3.0	20	72	9	52	51	14	4	29	1.63
39380419--39380472	24	2.2	23	78	18	56	64	1	14	18	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39384359--39384410	21	2.5	21	81	9	63	46	11	7	34	1.69
39391043--39391069	13	2.1	13	100	0	54	48	14	0	37	1.45
39391918--39391974	21	2.7	21	75	5	62	31	1	5	61	1.28
39409402--39409461	30	2.0	31	86	3	86	20	40	0	40	1.52
39410105--39410130	5	5.2	5	100	0	52	23	19	19	38	1.93
39415362--39415387	8	3.2	8	100	0	52	11	0	0	88	0.52
39422039--39422063	10	2.5	10	100	0	50	36	0	20	44	1.52
39422693--39422794	41	2.5	42	86	1	152	15	25	19	39	1.91
39422674--39422794	21	5.8	21	68	1	73	17	23	18	40	1.91
39422693--39422810	41	2.9	41	80	8	132	16	25	18	39	1.91
39432218--39432261	16	2.8	16	92	0	79	20	11	4	63	1.44
39432300--39432330	13	2.5	13	94	5	55	12	3	6	77	1.08
39433326--39433372	23	2.1	23	84	7	62	51	12	4	31	1.59
39435674--39435712	14	2.8	14	92	0	60	20	2	10	66	1.33
39444913--39444969	29	2.0	29	89	0	87	26	7	14	52	1.66
39444916--39444979	29	2.2	29	82	0	74	26	9	14	50	1.73
39455413--39455444	14	2.3	14	100	0	64	15	0	12	71	1.14
39455413--39455451	14	2.9	14	92	3	53	15	2	10	71	1.23
39455516--39455544	4	7.2	4	100	0	58	27	0	0	72	0.85
39455895--39455924	15	2.0	15	93	0	51	43	33	0	23	1.54
39456206--39456238	14	2.3	15	94	5	59	36	33	0	30	1.58
39456894--39456956	30	2.1	30	90	0	99	57	15	1	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39456986--39457028	22	2.0	22	85	0	59	58	6	13	20	1.59
39457323--39457438	60	2.0	60	89	3	182	27	9	17	45	1.79
39459867--39459904	19	2.0	19	89	0	58	10	0	44	44	1.38
39460135--39460167	5	6.6	5	100	0	66	57	0	0	42	0.98
39483538--39483676	60	2.3	60	85	2	190	46	2	12	38	1.55
39483569--39483662	30	3.2	30	70	18	88	45	3	10	40	1.55
39493873--39493919	16	2.9	16	84	9	51	48	6	27	17	1.71
39493894--39493924	16	1.9	16	93	0	53	48	3	29	19	1.64
39497398--39497451	18	3.0	18	79	17	51	72	0	7	20	1.08
39497398--39497450	19	2.9	19	83	10	58	73	0	7	18	1.06
39509064--39509102	20	2.0	20	90	10	62	71	0	0	28	0.86
39512582--39513022	104	4.3	104	83	1	483	28	24	19	28	1.98
39512578--39513022	206	2.1	208	83	2	538	28	23	19	28	1.98
39521675--39521756	42	2.0	42	92	0	137	37	14	10	36	1.82
39521771--39521797	14	1.9	14	100	0	54	37	25	14	22	1.93
39521918--39521961	18	2.4	17	82	14	52	27	2	6	63	1.31
39524516--39524549	2	17.0	2	100	0	68	50	0	0	50	1.00
39527313--39527344	6	5.2	6	92	7	55	15	18	0	65	1.27
39527313--39527351	12	3.2	12	85	3	51	12	20	2	64	1.40
39529965--39530022	30	1.9	30	89	0	89	41	3	24	31	1.71
39530234--39530265	13	2.5	13	94	0	55	31	0	12	56	1.37
39530360--39530601	50	4.7	50	86	4	297	26	24	29	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39530360--39530609	100	2.4	103	88	6	364	26	24	29	20	1.99
39537592--39537636	16	2.6	17	83	10	65	22	0	0	77	0.76
39537591--39537637	18	2.8	17	87	6	69	23	0	0	76	0.78
39537649--39537699	11	4.9	11	78	9	54	41	0	0	58	0.98
39537612--39537706	30	3.2	30	78	8	104	35	0	1	63	1.02
39543737--39543771	6	5.8	6	86	0	52	77	0	5	17	0.96
39550650--39550687	15	2.4	16	86	8	60	0	26	0	73	0.83
39553725--39553788	9	6.7	9	73	19	58	25	1	0	73	0.92
39554141--39554181	15	2.6	16	84	11	57	60	9	4	24	1.47
39562233--39562276	22	2.0	22	82	8	54	56	4	0	38	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170