genome.fa.s16.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  48  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14049259--14049504	44	5.3	45	69	11	147	28	20	22	28	1.98
14051259--14051422	68	2.4	68	82	3	186	29	10	2	57	1.45
14051264--14051422	69	2.3	68	81	3	176	30	10	2	56	1.46
14054394--14054485	19	4.8	19	87	0	139	39	16	7	36	1.77
14054395--14054485	38	2.4	38	94	0	155	39	16	7	36	1.77
14055050--14055460	101	4.1	101	84	2	515	25	22	20	31	1.98
14055177--14055332	50	3.1	50	64	5	134	26	25	21	27	1.99
14055771--14055837	34	2.0	34	93	0	116	29	25	20	23	1.99
14055807--14055925	44	2.7	44	94	0	202	31	23	18	26	1.97
14055886--14056056	88	1.9	88	81	9	206	21	22	28	28	1.99
14057292--14057337	13	3.7	12	82	8	56	2	19	0	78	0.86
14057279--14057336	24	2.4	25	82	2	73	1	24	0	74	0.92
14057283--14057337	25	2.2	25	83	3	67	1	23	0	74	0.91
14057302--14057337	19	1.9	19	88	5	56	2	16	0	80	0.83
14077873--14078599	217	3.3	217	81	4	775	29	18	23	28	1.98
14078391--14078771	174	2.2	174	88	1	550	28	19	22	28	1.98
14078043--14078639	218	2.7	216	79	7	652	28	18	23	28	1.98
14077978--14080850	44	66.0	44	66	14	578	29	19	23	27	1.98
14078562--14080920	218	10.8	218	89	2	3249	28	20	23	27	1.99
14078023--14079182	609	1.9	609	89	1	1806	28	19	24	27	1.98
14078562--14080920	653	3.6	652	89	2	3525	28	20	23	27	1.99
14078023--14079351	609	2.2	607	84	4	1539	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14078565--14080920	871	2.7	868	90	2	3709	28	20	23	27	1.99
14084143--14084219	19	3.8	19	89	6	100	40	16	6	36	1.75
14088822--14088875	19	2.8	19	94	0	99	37	16	9	37	1.81
14088799--14088875	38	1.9	40	87	10	113	38	16	7	36	1.78
14088815--14088886	38	2.0	34	82	15	83	36	18	9	36	1.83
14097515--14097557	23	2.0	23	86	9	63	53	4	6	34	1.49
14100003--14100230	111	2.1	111	99	0	447	39	17	24	19	1.92
14105017--14105220	90	2.3	87	81	4	230	40	20	6	32	1.79
14105264--14105322	20	2.9	20	78	14	66	69	0	3	27	1.04
14105285--14105337	27	2.0	27	88	0	79	67	0	1	30	1.01
14105566--14105680	18	6.2	18	69	20	67	28	6	2	62	1.32
14105670--14105722	26	2.0	26	89	7	81	39	0	0	60	0.97
14106261--14106331	26	2.8	25	82	4	88	71	5	22	0	1.06
14106249--14106328	4	19.0	4	74	13	54	71	3	22	2	1.14
14106288--14106330	21	2.0	20	91	8	68	79	0	20	0	0.74
14106717--14106756	19	2.0	20	85	4	55	55	2	12	30	1.50
14107011--14107070	2	30.0	2	100	0	120	0	0	50	50	1.00
14111512--14111588	14	5.0	15	71	20	52	42	15	9	32	1.78
14111528--14111567	20	2.0	20	90	0	62	50	12	10	27	1.72
14111516--14111582	34	1.9	35	90	3	109	46	13	8	31	1.74
14111551--14111590	14	2.9	14	84	0	53	42	17	7	32	1.77
14112374--14112775	41	9.6	41	79	7	398	35	24	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14112413--14112734	84	3.8	84	94	0	547	36	24	17	21	1.95
14119664--14119769	35	3.0	35	88	0	167	41	27	13	17	1.87
14121223--14121286	32	2.0	33	84	9	87	35	18	4	40	1.72
14121758--14121834	39	2.0	39	94	0	136	28	10	14	46	1.77
14125335--14125359	13	1.9	13	100	0	50	8	0	24	68	1.16
14126355--14126404	24	2.0	24	84	7	64	44	0	18	38	1.50
14126679--14126820	75	1.9	75	80	2	169	28	7	20	42	1.80
14127140--14127247	41	2.6	43	85	7	143	30	20	19	29	1.97
14127466--14127531	31	2.1	31	94	0	114	33	9	21	36	1.85
14127460--14127552	31	2.8	35	73	18	92	31	9	22	36	1.87
14133092--14133116	13	1.9	13	100	0	50	8	0	24	68	1.16
14134110--14134159	24	2.0	24	84	7	64	44	0	18	38	1.50
14134895--14135002	41	2.6	43	85	7	143	30	20	19	29	1.97
14135221--14135286	31	2.1	31	94	0	114	33	9	21	36	1.85
14143185--14143562	104	3.5	103	81	9	409	30	17	20	31	1.96
14144002--14144060	30	2.0	30	93	0	100	32	23	3	40	1.71
14145793--14145835	18	2.4	18	88	0	59	20	25	11	41	1.86
14147853--14148247	126	3.1	126	89	0	603	29	17	16	35	1.93
14148413--14148504	43	2.2	43	84	7	125	46	26	1	26	1.60
14149337--14149399	31	2.0	31	84	0	81	44	6	14	34	1.70
14149966--14149995	13	2.2	14	94	5	53	36	0	0	63	0.95
14150430--14150483	9	5.8	9	76	8	54	62	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14150553--14150596	20	2.3	19	84	4	52	70	4	0	25	1.06
14154661--14154707	19	2.4	20	82	13	62	48	6	14	29	1.69
14161521--14161574	27	2.0	28	85	10	76	40	9	0	50	1.35
14164315--14164359	22	1.9	22	82	13	54	40	4	4	51	1.42
14165904--14166091	42	4.5	41	84	4	223	36	21	18	24	1.95
14166569--14166640	21	3.4	21	92	3	110	4	44	16	34	1.67
14172143--14172638	9	56.8	9	73	14	405	32	1	20	45	1.58
14172132--14172451	25	12.3	25	72	17	147	33	1	20	45	1.59
14172195--14172536	150	2.3	150	97	0	648	32	0	20	46	1.57
14172195--14172602	150	2.7	149	91	3	633	32	0	21	46	1.57
14172423--14172627	88	2.3	88	95	0	374	30	0	21	47	1.55
14172744--14172787	23	1.9	23	100	0	88	36	0	18	45	1.49
14172991--14173155	13	12.5	13	74	7	136	46	3	9	40	1.54
14172982--14173131	53	2.8	53	96	0	273	45	3	10	41	1.54
14173044--14173182	66	2.1	66	83	0	170	45	2	10	41	1.52
14173306--14173357	18	2.8	19	83	11	63	57	1	1	38	1.21
14173866--14173908	13	3.2	13	77	6	50	67	4	2	25	1.22
14175261--14175670	147	2.8	144	76	6	376	35	21	15	27	1.94
14177143--14177573	114	3.8	114	87	1	567	28	25	21	24	1.99
14182088--14182680	88	6.8	88	79	5	608	29	25	22	22	1.99
14182088--14182680	174	3.4	175	81	4	590	29	25	22	22	1.99
14182773--14183056	50	5.7	50	63	5	142	30	21	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14182798--14183089	100	2.9	100	88	0	422	30	21	22	26	1.99
14185085--14185129	22	1.9	22	82	13	54	40	4	4	51	1.42
14187625--14187659	17	2.1	18	89	10	56	48	0	8	42	1.33
14190410--14190456	24	1.9	25	83	12	62	19	8	2	70	1.24
14191026--14191055	3	9.7	3	92	7	51	36	0	0	63	0.95
14195204--14195246	19	2.3	19	88	8	61	27	18	6	46	1.75
14203589--14203706	43	2.7	43	84	3	139	27	17	24	30	1.97
14205348--14205373	13	2.0	13	100	0	52	38	0	0	61	0.96
14205899--14205948	21	2.4	21	80	16	59	32	14	0	54	1.40
14213327--14213366	17	2.4	17	82	0	53	27	27	20	25	1.99
14214914--14214951	19	2.0	19	90	10	60	34	18	5	42	1.73
14216667--14216726	26	2.3	26	88	2	86	33	13	10	43	1.77
14222581--14222673	45	2.1	45	97	0	177	34	22	8	34	1.85
14224381--14224492	50	2.2	51	81	9	122	16	20	36	26	1.93
14228295--14228331	19	1.9	19	89	10	58	21	0	29	48	1.50
14230127--14230183	26	2.3	25	90	6	89	36	15	7	40	1.75
14230343--14230381	6	6.5	6	93	0	69	15	28	0	56	1.40
14233304--14233358	23	2.5	23	79	5	60	52	5	1	40	1.35
14237114--14237147	17	1.9	18	88	5	52	32	0	0	67	0.91
14237119--14237225	30	3.7	29	92	6	166	29	1	0	68	1.00
14237147--14237244	29	3.3	29	85	4	81	34	3	0	62	1.11
14237212--14237286	11	7.3	11	70	20	56	41	1	0	57	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14237221--14237279	27	2.0	30	84	12	79	42	1	0	55	1.09
14237182--14237304	38	3.0	39	84	11	151	39	1	0	58	1.14
14237257--14237282	13	2.0	13	100	0	52	46	0	0	53	1.00
14238302--14238336	3	11.7	3	100	0	70	31	0	0	68	0.90
14239685--14239800	50	2.3	49	86	5	162	27	18	21	31	1.97
14240374--14240420	4	11.8	4	100	0	94	51	23	0	25	1.49
14246964--14247101	43	3.2	43	75	10	131	34	26	11	27	1.91
14258370--14258479	57	1.9	57	83	5	141	44	7	20	28	1.77
14266476--14266522	14	2.9	16	76	17	53	53	0	2	44	1.12
14273412--14273468	22	2.6	22	77	2	62	35	19	26	19	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170