genome.fa.s16.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  17  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4707827--4708136	64	5.0	63	70	15	196	37	5	14	42	1.68
4707871--4708140	63	4.3	62	69	15	189	36	5	15	42	1.70
4707785--4708140	187	1.9	188	94	1	624	37	4	15	42	1.67
4708471--4708603	41	3.2	41	91	2	205	24	17	24	33	1.96
4708471--4708698	41	5.6	42	84	6	163	26	17	26	28	1.98
4708470--4708697	82	2.8	81	79	7	205	26	18	26	28	1.98
4713064--4713399	176	1.9	177	86	10	494	30	14	21	34	1.93
4714571--4714598	13	2.2	13	100	0	56	28	0	21	50	1.49
4715757--4715808	19	2.7	19	71	14	52	34	0	13	51	1.41
4715548--4715945	184	2.1	193	90	6	625	37	5	15	42	1.69
4715635--4715895	63	4.2	62	69	16	164	37	5	13	42	1.69
4715635--4715941	64	5.0	62	70	15	188	37	5	14	41	1.70
4715595--4716015	184	2.3	185	85	6	550	36	5	16	42	1.71
4716277--4716380	41	2.5	40	82	10	122	23	19	27	29	1.98
4716359--4716462	41	2.5	41	95	0	181	26	20	29	23	1.98
4718671--4718699	12	2.4	12	100	0	58	58	0	6	34	1.25
4728552--4728604	20	2.8	18	78	18	54	58	0	0	41	0.98
4728551--4728610	32	1.9	31	90	6	95	58	0	0	41	0.98
4728600--4728651	18	2.9	17	75	11	50	61	3	1	32	1.25
4728551--4728649	37	2.9	33	80	15	89	58	2	1	38	1.16
4729743--4729805	30	2.1	31	93	3	110	28	25	6	39	1.80
4729755--4729800	15	3.0	16	68	12	51	26	26	6	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4734145--4734198	27	2.0	27	85	0	72	24	24	16	35	1.95
4734400--4734459	30	2.0	31	86	3	86	25	21	6	46	1.75
4738269--4738652	45	8.4	45	70	9	202	32	18	20	28	1.96
4738404--4738659	142	1.8	140	80	5	309	32	17	21	28	1.96
4738856--4738895	21	2.0	19	90	9	62	70	17	0	12	1.18
4740956--4740998	21	2.0	21	86	0	59	51	6	25	16	1.69
4743653--4743801	57	2.5	59	83	10	187	30	21	25	22	1.99
4743922--4744047	66	1.9	66	96	0	234	19	18	35	26	1.95
4747002--4747040	21	1.9	19	85	10	51	46	0	5	48	1.24
4748098--4748127	15	2.0	15	93	0	51	63	6	6	23	1.43
4751494--4751565	27	2.7	27	82	6	101	26	34	30	8	1.86
4751828--4752048	82	2.8	77	77	11	225	33	4	11	50	1.58
4751828--4752048	40	5.6	41	70	18	134	33	4	11	50	1.58
4755554--4755596	12	3.6	12	83	0	50	9	27	37	25	1.87
4757221--4758282	157	6.9	154	87	6	1387	29	10	8	51	1.66
4757221--4758471	458	2.8	453	85	8	1581	29	10	8	51	1.66
4758145--4758414	132	2.1	131	85	5	359	27	12	10	49	1.74
4758845--4758891	5	9.4	5	77	9	51	0	34	0	65	0.93
4758839--4758883	20	2.2	20	96	0	81	0	35	0	64	0.94
4758813--4758908	20	4.6	20	74	14	70	0	37	0	62	0.95
4758839--4758903	10	6.6	10	77	8	62	0	33	0	66	0.92
4758857--4758911	13	3.9	13	77	13	56	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4758944--4759009	27	2.4	27	87	0	96	6	34	33	25	1.81
4759564--4759623	27	2.1	29	84	6	79	13	0	36	50	1.42
4759609--4759946	96	3.5	96	80	6	348	37	2	18	41	1.64
4762855--4762918	21	3.0	22	79	9	69	3	20	43	32	1.67
4765019--4765067	22	2.2	21	82	10	62	48	0	28	22	1.50
4765019--4765067	11	4.5	10	78	16	53	48	0	28	22	1.50
4766191--4766246	16	3.5	16	85	4	78	42	5	21	30	1.75
4766412--4766568	55	2.9	54	78	12	151	52	3	1	42	1.25
4768083--4768154	35	2.0	36	97	2	137	31	11	11	45	1.75
4769991--4770064	21	3.7	21	89	10	120	39	9	13	37	1.77
4769997--4770064	19	3.5	19	91	4	100	39	8	13	38	1.75
4770743--4770776	16	2.1	16	88	0	50	23	0	0	76	0.79
4770835--4770908	27	2.9	23	74	18	58	33	2	4	59	1.30
4771235--4771273	19	2.1	18	85	4	51	28	5	10	56	1.54
4771513--4771707	98	2.0	98	93	0	336	28	9	25	37	1.86
4773710--4773761	24	2.2	24	100	0	104	30	7	36	25	1.84
4775275--4775337	32	2.0	32	100	0	126	26	19	15	38	1.92
4775898--4775935	12	3.5	11	86	10	51	89	10	0	0	0.49
4777283--4777494	44	4.8	43	66	12	117	28	20	26	24	1.99
4777213--4777601	132	2.9	131	92	0	643	29	21	25	24	1.99
4777586--4778088	44	11.6	43	76	11	361	28	20	23	28	1.99
4777672--4778190	89	6.0	85	70	17	334	28	20	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4777589--4778194	217	2.8	217	94	0	1077	28	20	23	27	1.99
4777718--4778041	173	1.9	173	83	6	433	28	21	23	27	1.99
4777672--4778184	44	11.8	43	73	14	310	28	20	23	27	1.99
4778361--4778460	21	4.9	21	82	15	120	38	8	13	41	1.73
4778360--4778441	40	2.2	37	84	8	112	39	8	14	37	1.77
4778367--4778434	19	3.5	19	91	4	100	39	8	13	38	1.75
4778755--4778801	21	2.2	21	77	7	51	27	10	0	61	1.29
4779633--4779690	30	1.9	30	89	0	89	41	3	24	31	1.71
4779902--4779933	13	2.5	13	94	0	55	31	0	12	56	1.37
4780028--4780269	50	4.7	50	86	4	297	26	24	29	19	1.99
4780028--4780277	100	2.4	103	88	6	364	26	24	29	20	1.99
4781758--4781809	25	2.1	25	85	7	70	32	3	5	57	1.40
4782382--4782418	19	1.9	19	88	0	56	32	5	8	54	1.53
4782656--4782850	98	2.0	98	94	0	345	28	9	24	37	1.87
4784438--4784487	26	1.9	26	95	0	91	60	30	0	10	1.30
4785600--4785631	17	1.9	17	93	6	57	21	3	0	75	0.95
4785600--4785631	8	3.9	8	92	8	55	21	3	0	75	0.95
4788996--4789052	19	2.9	21	80	17	61	70	7	1	21	1.20
4790222--4790246	6	4.2	6	100	0	50	16	20	48	16	1.82
4792543--4792578	7	5.1	7	100	0	72	27	0	0	72	0.85
4792733--4792766	3	11.3	3	87	0	50	38	0	0	61	0.96
4792885--4792910	4	6.5	4	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4793359--4793559	107	1.9	107	89	2	314	32	16	18	32	1.94
4798536--4798623	44	2.0	44	97	0	167	39	29	5	25	1.78
4799951--4800056	52	2.1	51	81	1	122	45	6	11	36	1.66
4800965--4800993	2	14.5	2	100	0	58	48	0	51	0	1.00
4803280--4803312	12	2.8	12	95	0	57	54	0	9	36	1.32
4804773--4804975	112	1.8	112	100	0	406	33	17	12	36	1.87
4811455--4811568	50	2.3	50	84	3	140	33	21	21	24	1.97
4811462--4811556	25	3.8	25	77	15	97	35	20	21	23	1.96
4811455--4811566	25	4.5	25	75	12	95	33	21	21	24	1.98
4820139--4820171	11	3.1	11	86	8	50	30	0	33	36	1.58
4820141--4820182	21	2.0	21	90	0	66	35	0	23	40	1.55
4823707--4823759	26	2.1	27	86	10	76	75	3	7	13	1.15
4825571--4825621	22	2.3	22	81	18	61	60	5	5	27	1.43
4828724--4828785	30	2.1	30	81	6	72	40	3	4	51	1.39
4829396--4829435	18	2.2	19	86	13	57	5	37	0	57	1.21
4849466--4849499	16	2.1	16	94	0	59	11	35	0	52	1.38
4850370--4850403	11	3.1	11	100	0	68	35	11	8	44	1.72
4850643--4851285	321	2.0	321	98	0	1232	29	13	17	39	1.88
4851932--4851971	20	2.0	20	85	0	53	50	15	10	25	1.74
4853078--4853140	28	2.3	26	78	13	63	47	1	0	50	1.10
4859588--4860337	376	2.0	375	98	0	1464	40	17	14	27	1.89
4861489--4861539	25	2.1	24	82	13	61	25	1	13	58	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4865467--4865534	31	2.2	32	79	12	79	57	2	4	35	1.34
4866178--4866235	26	2.2	27	88	11	86	32	6	0	60	1.23
4876799--4877113	41	7.7	41	86	1	425	23	27	20	28	1.99
4876802--4877113	82	3.8	82	90	0	471	23	27	19	29	1.98
4883487--4883554	27	2.5	26	71	15	66	45	2	10	41	1.53
4883920--4883966	8	6.4	7	81	16	51	55	0	2	42	1.12
4883928--4883974	16	3.0	16	84	6	60	55	2	0	42	1.12
4883928--4883972	21	2.1	21	88	8	65	55	2	0	42	1.12
4891769--4891854	40	2.2	40	97	0	163	36	15	17	31	1.91
4893756--4893797	18	2.3	19	83	4	59	71	7	2	19	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170