genome.fa.s16.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  162  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48133472--48133861	177	2.2	177	91	0	629	37	19	23	18	1.94
48136178--48136226	23	2.1	23	88	0	71	34	12	10	42	1.76
48136223--48136261	18	2.2	18	85	0	51	48	2	10	38	1.51
48136989--48137024	18	1.9	19	94	5	65	63	0	0	36	0.94
48137422--48137491	32	2.2	32	90	5	108	54	11	12	21	1.69
48143577--48143611	16	2.2	16	90	10	54	45	0	0	54	0.99
48146984--48147174	96	2.0	96	94	0	337	34	10	21	32	1.89
48151562--48151598	19	1.9	19	88	0	56	37	2	32	27	1.71
48151775--48151877	48	2.1	50	87	5	147	32	25	16	26	1.96
48152040--48152074	12	3.0	12	91	4	54	45	0	11	42	1.40
48154907--48154943	19	1.9	19	88	0	56	64	8	8	18	1.45
48166653--48166700	19	2.6	17	79	20	53	50	4	0	45	1.21
48167036--48167122	33	2.6	33	80	5	86	39	10	4	45	1.59
48173550--48173626	16	4.5	18	67	17	56	32	3	0	63	1.12
48173742--48173789	22	2.3	20	82	10	53	60	0	0	39	0.97
48175107--48175235	63	2.0	63	100	0	258	29	25	15	29	1.96
48182978--48183003	8	3.2	8	100	0	52	34	23	0	42	1.54
48186736--48186762	9	3.0	9	100	0	54	88	11	0	0	0.50
48187009--48187153	37	3.9	37	85	0	191	40	6	0	52	1.33
48187009--48187153	19	7.8	18	76	5	119	40	6	0	52	1.33
48187028--48187169	74	1.9	73	84	4	187	42	4	0	51	1.28
48195632--48195670	3	13.0	3	100	0	78	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48195995--48196025	14	2.2	14	100	0	62	41	12	6	38	1.69
48205105--48205137	14	2.3	15	94	5	59	33	24	6	36	1.80
48210363--48210402	18	2.2	18	90	0	62	45	10	20	25	1.81
48211415--48211444	2	15.0	2	100	0	60	0	50	0	50	1.00
48215470--48215544	37	2.0	37	92	0	123	38	10	22	28	1.87
48230780--48230880	35	3.1	35	65	24	103	41	4	6	46	1.52
48230752--48230883	61	2.2	63	88	12	213	42	4	6	46	1.51
48230805--48230835	15	2.1	15	100	0	62	48	0	6	45	1.28
48230771--48230885	61	1.9	61	100	0	230	40	5	6	47	1.53
48236744--48236903	81	1.9	84	82	6	202	31	15	4	48	1.64
48237888--48238775	293	3.0	293	98	0	1704	30	18	13	36	1.90
48240332--48240379	23	2.0	24	84	11	64	33	4	27	35	1.76
48243264--48243302	20	2.0	19	95	5	69	41	15	5	38	1.69
48244787--48244826	21	2.0	20	90	5	62	57	15	0	27	1.38
48244703--48245359	234	2.8	230	86	4	844	45	17	6	30	1.74
48249544--48249599	16	3.4	16	73	11	51	60	0	1	37	1.07
48250165--48250292	50	2.5	50	82	8	143	39	6	17	36	1.75
48254086--48254128	21	2.0	23	86	9	63	23	2	6	67	1.27
48255098--48255146	26	1.9	25	84	12	64	44	12	20	22	1.84
48257539--48257586	20	2.4	20	82	0	60	62	18	12	6	1.50
48263989--48264101	60	1.9	60	81	3	138	46	15	15	22	1.83
48264053--48264131	31	2.5	31	85	0	104	46	13	15	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48264280--48264347	33	2.2	31	80	12	77	54	4	4	36	1.41
48267896--48267956	31	2.0	31	83	0	77	39	8	4	47	1.55
48269207--48269233	2	13.5	2	100	0	54	51	0	0	48	1.00
48270932--48271334	175	2.3	175	92	1	657	24	19	23	32	1.98
48277224--48277315	45	2.0	45	93	0	157	39	18	19	22	1.93
48278067--48278106	14	2.9	14	80	0	53	52	2	0	45	1.14
48279519--48279571	19	2.8	19	77	8	63	37	0	0	62	0.96
48288387--48288424	19	2.0	19	100	0	76	52	0	31	15	1.43
48288388--48288430	19	2.2	19	91	4	68	58	0	25	16	1.38
48288957--48288981	13	1.9	13	100	0	50	24	16	36	24	1.94
48310356--48310415	24	2.4	25	78	15	72	21	6	6	65	1.40
48310360--48310413	23	2.2	25	84	12	69	22	7	7	62	1.46
48318047--48318093	22	2.1	22	84	7	60	31	12	12	42	1.81
48323746--48323776	3	10.3	3	92	0	53	35	0	0	64	0.94
48324269--48324369	52	2.0	51	82	5	123	37	13	5	42	1.69
48337814--48337902	39	2.2	40	86	5	119	38	2	6	52	1.40
48338974--48339009	17	2.2	16	90	5	54	38	2	0	58	1.13
48341769--48341840	27	2.6	29	75	14	71	38	2	2	55	1.29
48341729--48341844	46	2.5	44	74	9	115	43	2	2	51	1.29
48345059--48345096	18	2.2	18	85	4	51	44	2	2	50	1.30
48345571--48345624	19	2.9	17	78	19	56	27	3	7	61	1.40
48349612--48349677	34	1.9	34	90	0	105	45	16	6	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48356718--48356754	3	12.3	3	94	0	65	0	64	0	35	0.94
48366622--48366659	19	2.0	19	89	0	58	36	18	7	36	1.80
48374236--48374344	43	2.5	43	82	5	123	25	17	22	33	1.96
48383526--48384109	44	13.1	44	79	5	530	33	17	20	29	1.95
48384315--48384371	28	2.1	27	80	9	62	66	21	1	10	1.31
48384830--48384854	13	1.9	13	100	0	50	80	4	16	0	0.87
48385463--48385675	69	3.3	63	78	15	197	28	9	2	60	1.40
48385532--48385666	61	2.2	60	82	5	155	27	9	3	59	1.46
48398100--48398159	30	2.0	30	100	0	120	43	10	13	33	1.77
48411149--48411178	12	2.6	11	90	10	51	53	10	0	36	1.35
48411158--48411231	25	2.9	24	74	8	67	66	5	2	25	1.27
48411453--48411498	14	3.2	14	80	19	51	69	0	4	26	1.07
48411485--48411524	21	1.9	21	84	0	53	70	7	2	20	1.24
48411030--48411600	293	2.0	288	81	4	673	46	12	10	29	1.76
48414358--48414392	16	2.2	16	89	0	52	8	28	5	57	1.52
48426227--48426319	22	4.3	22	72	8	73	16	26	17	39	1.90
48426224--48426307	43	2.0	43	82	0	105	14	25	20	40	1.90
48430611--48430652	20	2.1	20	86	0	57	47	0	7	45	1.30
48438417--48438447	14	2.1	15	94	5	55	22	12	3	61	1.46
48439744--48439802	31	1.9	31	85	0	82	42	11	11	33	1.78
48450130--48450315	55	3.3	55	81	3	219	51	16	6	24	1.69
48463437--48463512	33	2.3	33	84	8	93	44	13	11	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48475832--48476201	87	4.3	87	73	11	233	27	20	20	31	1.97
48475872--48476201	44	7.6	43	73	11	225	26	20	21	31	1.98
48488129--48488161	17	2.0	17	88	5	50	75	9	3	12	1.14
48488603--48488652	14	3.8	13	79	15	50	62	2	2	34	1.18
48494746--48494781	18	1.9	19	88	5	56	44	0	0	55	0.99
48494862--48494895	16	2.1	17	88	5	52	41	0	5	52	1.25
48499373--48499452	32	2.5	32	83	0	97	51	10	2	36	1.49
48501667--48501819	42	3.6	42	78	7	150	43	16	15	24	1.86
48520233--48520284	20	2.6	20	82	14	63	73	1	1	23	1.04
48520757--48520797	21	2.0	20	90	9	66	29	0	0	70	0.87
48523223--48523291	28	2.5	28	78	4	77	53	1	2	42	1.24
48523431--48523549	3	39.7	3	71	12	84	63	2	4	29	1.26
48523419--48523521	21	5.2	20	75	14	72	65	3	2	28	1.25
48523416--48523521	12	8.8	12	68	25	57	65	3	2	28	1.24
48535656--48535688	16	2.1	16	94	0	57	78	0	6	15	0.93
48542703--48542741	21	1.9	21	89	5	62	61	2	2	33	1.23
48546026--48546059	13	2.6	13	86	13	52	52	0	0	47	1.00
48550231--48550267	19	1.9	19	94	0	65	59	0	0	40	0.97
48551939--48551984	8	5.8	8	87	10	51	32	0	0	67	0.91
48555490--48555539	16	3.0	17	78	21	52	42	4	4	50	1.40
48558035--48558101	34	1.9	35	84	3	91	46	13	8	31	1.74
48562752--48562778	5	5.4	5	100	0	54	18	0	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48565311--48565338	4	7.0	4	100	0	56	25	0	25	50	1.50
48572144--48572235	41	2.2	41	82	0	112	27	19	23	29	1.98
48574193--48574254	18	3.4	18	67	8	54	12	1	29	56	1.46
48574185--48574254	36	1.9	36	97	0	131	12	1	32	52	1.48
48582604--48582646	22	2.0	22	100	0	86	27	34	0	37	1.57
48582622--48582724	51	2.0	50	83	5	127	30	25	1	42	1.66
48584918--48584965	21	2.3	21	77	0	51	39	33	25	2	1.67
48585149--48585339	29	6.7	29	93	1	332	46	29	0	23	1.53
48585149--48585339	86	2.2	87	94	1	332	46	29	0	23	1.53
48588516--48588868	125	2.8	126	92	1	602	32	22	16	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170