genome.fa.s16.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  76  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23155749--23155774	7	3.7	7	100	0	52	57	15	0	26	1.38
23156937--23157032	11	9.0	11	73	14	76	43	2	30	23	1.65
23156921--23157020	51	2.0	51	92	4	166	46	1	28	25	1.60
23157825--23157885	30	1.9	33	87	12	92	49	0	0	50	1.00
23159795--23159849	5	11.2	5	79	13	53	72	0	5	21	1.04
23159792--23159844	9	5.7	9	81	16	63	73	0	3	22	0.99
23159795--23159831	13	2.7	13	91	8	56	75	0	2	21	0.92
23173043--23173226	36	5.2	36	76	5	205	35	21	19	23	1.96
23173041--23173256	70	3.1	69	90	1	333	35	23	18	22	1.96
23173057--23173284	36	6.4	36	75	9	191	35	23	18	22	1.96
23173200--23173296	37	2.6	37	90	4	144	37	26	14	21	1.92
23174973--23175001	5	5.8	5	100	0	58	17	0	0	82	0.66
23186242--23186278	18	2.0	19	89	5	58	8	40	0	51	1.32
23196702--23196767	27	2.4	27	94	2	114	28	4	13	53	1.60
23196971--23197021	23	2.2	23	100	0	102	21	9	21	47	1.79
23197941--23197973	16	2.1	16	88	5	50	57	0	3	39	1.14
23216294--23216324	2	15.5	2	100	0	62	0	0	48	51	1.00
23216852--23217011	41	3.9	41	93	0	275	26	20	23	29	1.99
23218330--23218439	53	2.1	54	85	1	150	38	12	24	24	1.90
23218551--23218679	57	2.3	57	80	2	143	40	17	17	24	1.91
23220125--23220169	23	2.0	23	82	8	56	33	4	11	51	1.58
23220740--23220916	42	4.2	42	91	0	275	31	20	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23223015--23223125	33	3.4	33	89	0	168	15	11	34	38	1.84
23226693--23226878	51	3.7	49	82	3	219	24	17	27	30	1.97
23226883--23226982	46	2.2	44	81	11	114	25	17	25	33	1.96
23227083--23227155	37	1.9	38	86	2	103	42	2	23	31	1.68
23249328--23249369	16	2.6	16	74	11	50	19	9	21	50	1.75
23250891--23250927	9	4.1	9	89	0	56	27	13	13	45	1.81
23250981--23251011	9	3.4	9	90	0	53	38	22	12	25	1.90
23252177--23252244	32	2.2	32	94	2	120	61	0	1	36	1.05
23252278--23252327	22	2.3	22	89	6	75	36	0	32	32	1.58
23254936--23255003	16	4.2	16	92	0	109	27	1	36	33	1.66
23254984--23255078	45	2.1	44	84	1	118	36	5	25	32	1.78
23255216--23255270	25	2.2	25	81	15	62	50	1	0	47	1.11
23255249--23255283	18	2.0	17	88	5	52	54	0	0	45	0.99
23255277--23255464	61	3.1	61	67	11	161	47	6	3	42	1.46
23255242--23255516	120	2.3	120	90	1	426	49	4	2	42	1.38
23261907--23261979	30	2.4	30	72	0	74	26	32	21	19	1.97
23262621--23262698	24	3.4	24	75	8	81	32	11	32	24	1.91
23263989--23264038	25	2.0	25	92	0	82	36	4	28	32	1.76
23264321--23264370	26	1.9	26	100	0	100	44	16	28	12	1.83
23288214--23288260	16	2.9	16	81	12	60	25	10	0	63	1.26
23290388--23290470	18	4.7	18	67	25	52	49	8	7	34	1.61
23290377--23290479	51	2.0	51	98	0	197	49	10	7	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23296054--23296118	21	3.0	21	76	15	51	52	0	0	47	1.00
23296339--23296461	43	2.9	43	93	0	210	26	33	19	20	1.96
23296477--23296507	15	2.0	16	93	6	55	35	6	0	58	1.24
23296728--23296818	43	2.1	43	87	2	130	43	9	12	34	1.75
23301162--23301290	14	9.0	14	76	14	56	41	36	0	21	1.59
23301167--23301219	21	2.5	22	84	12	74	35	41	0	22	1.54
23301134--23301246	28	4.0	28	75	7	95	40	38	1	19	1.62
23301207--23301264	21	2.8	21	81	0	62	46	34	0	18	1.50
23301210--23301294	7	12.0	7	77	2	53	44	34	0	21	1.52
23301238--23301294	22	2.6	22	80	2	62	45	31	0	22	1.53
23302064--23302461	41	9.9	41	83	7	467	26	31	22	19	1.98
23302100--23302162	32	2.0	32	90	0	99	22	31	25	20	1.98
23302471--23302586	40	2.9	39	77	9	128	23	22	20	33	1.97
23303884--23303930	22	2.1	22	96	0	85	29	10	12	46	1.76
23304733--23304777	12	3.6	12	82	11	54	22	2	2	73	1.05
23308163--23308273	27	4.1	27	94	1	152	35	10	24	29	1.89
23315182--23315207	12	2.2	12	100	0	52	23	38	30	7	1.83
23320125--23320160	18	2.0	18	100	0	72	38	11	27	22	1.88
23323793--23323851	27	2.1	27	87	3	82	33	20	3	42	1.69
23323793--23323849	13	4.3	13	76	12	53	35	21	3	40	1.70
23325425--23325456	15	2.1	16	94	5	57	28	6	12	53	1.62
23342714--23342809	31	3.1	31	95	3	174	31	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23348427--23348490	28	2.4	27	86	5	85	51	12	10	25	1.72
23350426--23350483	18	3.4	17	77	13	66	5	15	1	77	1.02
23350424--23350491	33	2.0	35	85	5	95	7	17	2	72	1.21
23350996--23351082	43	2.0	43	97	0	165	34	25	8	32	1.85
23351499--23351550	22	2.3	23	83	12	63	17	5	5	71	1.26
23351514--23351555	21	2.0	22	85	4	59	21	4	4	69	1.26
23352878--23352937	28	2.2	27	87	3	84	53	11	6	28	1.62
23353829--23354085	137	1.9	138	81	4	313	31	26	21	20	1.98
23356475--23356519	17	2.6	17	82	10	56	26	0	13	60	1.34
23359159--23359367	27	7.8	27	78	6	185	34	20	20	24	1.96
23359159--23359370	54	4.0	54	83	3	243	34	19	20	25	1.96
23359159--23359352	81	2.4	80	84	1	253	34	21	19	24	1.96
23359194--23359394	27	7.5	26	78	6	104	33	19	20	25	1.96
23359491--23359548	27	2.1	27	84	6	73	18	24	22	34	1.96
23359566--23359738	32	5.4	32	78	3	170	21	18	19	41	1.91
23359797--23359859	26	2.4	26	91	0	99	20	19	20	39	1.92
23362175--23362239	20	3.2	20	77	0	67	40	15	21	23	1.91
23362171--23362239	30	2.3	30	87	5	95	42	15	20	21	1.89
23363921--23364026	48	2.2	48	83	9	128	15	23	1	59	1.46
23365073--23365135	14	4.6	14	69	20	53	4	14	6	74	1.18
23365073--23365123	15	3.5	15	78	10	61	3	13	5	76	1.11
23365054--23365134	29	2.8	28	81	10	92	8	14	4	71	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23374251--23374288	19	2.0	20	89	5	60	44	5	5	44	1.49
23379207--23379244	20	1.9	20	88	0	58	28	7	13	50	1.69
23379192--23379258	34	1.9	35	84	3	91	29	7	13	49	1.69
23382172--23382243	37	1.9	37	100	0	144	40	15	5	38	1.70
23383808--23383909	44	2.3	44	86	0	150	45	27	6	20	1.76
23384250--23384282	14	2.4	14	94	0	57	15	9	60	15	1.58
23385215--23385255	21	1.9	22	85	5	57	73	2	4	19	1.13
23385213--23385252	14	2.9	14	84	0	53	75	2	5	17	1.10
23385574--23385638	32	2.0	32	100	0	130	46	0	16	36	1.48
23385911--23385952	21	2.0	21	100	0	84	33	9	14	42	1.78
23388944--23389138	50	3.9	50	77	3	144	23	27	21	28	1.99
23396347--23396585	50	4.7	50	77	5	187	25	27	19	27	1.99
23397571--23397604	13	2.6	13	100	0	68	38	0	14	47	1.45
23414172--23414212	20	2.0	20	85	4	55	34	14	4	46	1.66
23417623--23417807	101	1.8	101	85	3	264	25	16	24	32	1.96
23422875--23423065	51	3.8	51	81	4	235	25	17	26	30	1.97
23443120--23443144	13	1.9	13	100	0	50	40	0	0	60	0.97
23443105--23443165	30	1.9	32	83	9	81	47	1	3	47	1.28
23443713--23443806	40	2.3	40	89	3	136	30	20	25	23	1.98
23443876--23444113	41	5.8	41	86	3	318	20	18	30	30	1.96
23444393--23444446	22	2.5	21	78	3	54	18	0	31	50	1.48
23444339--23444523	75	2.5	75	91	0	298	20	2	29	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23444413--23444447	14	2.5	14	90	0	52	14	0	37	48	1.44
23444468--23444608	7	19.7	7	72	12	72	19	0	34	45	1.56
23449113--23449203	43	2.1	43	86	6	123	34	9	9	46	1.70
23449590--23449874	43	6.7	42	84	2	347	25	18	29	27	1.98
23449590--23449874	85	3.4	85	85	1	358	25	18	29	27	1.98
23449625--23449874	127	2.0	128	86	0	358	26	18	28	26	1.98
23453237--23453384	52	2.7	53	71	15	133	46	12	12	27	1.79
23457552--23457590	21	1.9	20	84	5	51	30	5	10	53	1.56
23461026--23461125	39	2.6	39	93	0	164	48	12	10	30	1.73
23468699--23469216	125	4.1	126	84	4	647	30	17	21	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170