genome.fa.s16.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  168  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50027909--50027959	9	5.5	10	86	13	74	86	0	0	13	0.58
50027909--50027960	19	2.8	18	88	5	77	84	0	0	15	0.62
50027911--50027958	7	6.9	7	79	15	55	85	0	0	14	0.60
50028025--50028106	36	2.3	35	81	10	103	23	12	14	50	1.76
50028025--50028458	17	25.0	17	69	14	183	29	13	11	45	1.79
50028285--50028487	109	1.9	108	81	10	252	32	12	10	43	1.78
50028449--50028487	19	2.1	19	90	4	62	46	10	7	35	1.67
50032849--50032885	6	6.2	6	100	0	74	83	0	0	16	0.64
50033976--50034224	100	2.6	97	82	6	324	44	13	13	28	1.81
50034171--50034291	64	1.9	65	89	5	192	47	11	11	28	1.75
50046060--50046100	21	2.0	21	90	0	64	19	29	21	29	1.98
50056540--50056589	17	2.7	20	78	18	70	10	0	44	46	1.37
50061178--50061227	17	2.7	20	78	18	70	10	0	44	46	1.37
50063136--50063197	31	2.0	31	96	0	115	32	4	19	43	1.72
50064320--50064349	13	2.4	13	94	5	53	40	13	6	40	1.71
50064414--50064474	32	1.9	32	86	0	86	32	16	14	36	1.89
50069127--50069162	15	2.5	14	86	8	54	44	8	0	47	1.33
50070141--50070186	13	3.5	13	78	18	51	56	4	0	39	1.19
50077006--50077034	3	9.7	3	100	0	58	68	0	0	31	0.89
50091380--50091445	31	2.1	32	94	2	116	34	21	15	28	1.93
50091883--50092190	167	1.8	166	82	9	397	30	10	9	49	1.69
50094639--50094730	3	31.0	3	85	10	127	31	3	1	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50094980--50095039	26	2.4	25	86	8	77	40	5	1	53	1.33
50094999--50095062	27	2.4	26	82	7	76	40	4	4	50	1.44
50095079--50095112	12	2.8	12	86	0	50	29	2	0	67	1.05
50097660--50097723	3	22.0	3	90	6	96	32	3	0	64	1.10
50097976--50098035	26	2.4	25	86	8	77	40	5	1	53	1.33
50097995--50098058	27	2.4	26	82	7	76	40	4	4	50	1.44
50098085--50098116	4	8.0	4	100	0	64	25	0	0	75	0.81
50103729--50104028	46	6.5	46	89	0	458	26	15	25	32	1.95
50103952--50104101	80	1.9	80	88	0	228	25	18	23	33	1.97
50104147--50104994	50	17.6	50	71	12	447	32	22	20	24	1.98
50104243--50104997	95	7.9	95	83	7	804	32	22	20	24	1.98
50104236--50104999	195	4.0	190	82	8	822	32	22	20	24	1.98
50104886--50105067	98	1.9	98	82	0	229	35	21	18	23	1.95
50106696--50106771	3	26.0	3	92	5	120	32	2	0	64	1.07
50107023--50107082	26	2.4	25	86	8	77	40	5	1	53	1.33
50107042--50107105	27	2.4	26	82	7	76	40	4	4	50	1.44
50107122--50107155	12	2.8	12	86	0	50	29	2	0	67	1.05
50109145--50109210	28	2.4	28	84	0	87	25	21	21	31	1.98
50109868--50109909	22	1.9	23	85	9	61	59	4	14	21	1.53
50113208--50113265	16	3.6	16	76	4	62	37	10	1	50	1.47
50113344--50113414	35	2.0	35	86	5	99	29	12	4	53	1.57
50116028--50116056	15	1.9	15	100	0	58	48	0	3	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50128501--50128544	20	2.2	20	100	0	88	40	22	4	31	1.74
50143234--50143531	144	2.1	144	86	3	417	34	28	7	29	1.85
50148368--50148504	50	2.8	50	93	1	222	29	9	7	54	1.60
50148837--50148931	8	10.6	9	72	17	65	56	2	2	38	1.23
50148835--50148931	27	3.5	28	79	12	94	56	2	2	39	1.22
50148846--50148933	19	4.8	19	72	12	76	57	1	2	38	1.18
50148968--50149016	17	2.9	16	76	11	53	63	2	2	32	1.17
50149781--50149843	30	2.1	31	85	8	85	49	6	1	42	1.37
50152120--50152164	18	2.5	19	82	10	58	44	2	0	53	1.13
50159596--50159631	18	2.0	18	94	0	63	41	16	19	22	1.90
50162729--50163034	110	2.8	110	91	1	492	33	19	16	30	1.94
50163525--50163557	17	1.9	17	88	11	50	57	0	3	39	1.14
50165906--50166175	47	5.7	47	92	0	416	32	8	30	28	1.87
50166294--50166373	37	2.2	37	88	0	115	23	17	31	27	1.97
50169281--50169631	44	8.0	44	72	11	234	25	23	21	29	1.99
50169336--50169497	46	3.6	46	76	9	188	28	22	20	27	1.99
50169281--50169629	90	3.9	90	79	7	331	25	23	21	29	1.99
50180606--50180713	24	4.3	24	82	5	126	34	0	4	60	1.24
50180665--50180709	14	3.5	14	71	22	53	33	0	2	64	1.06
50187339--50187430	47	2.0	47	89	2	141	21	11	9	56	1.64
50192130--50192365	115	2.0	116	85	4	314	40	9	12	37	1.76
50195978--50196021	21	2.1	21	86	0	61	56	13	9	20	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50196680--50196732	18	2.9	17	78	10	61	28	0	3	67	1.07
50204233--50204289	26	2.1	27	96	3	107	35	22	3	38	1.72
50233681--50233974	156	1.9	156	92	0	498	44	21	7	27	1.78
50238781--50238809	3	9.7	3	100	0	58	65	0	34	0	0.93
50245148--50245347	72	2.8	72	93	0	346	37	13	17	32	1.88
50247747--50247793	17	2.8	16	81	9	58	38	0	4	57	1.18
50247747--50247801	17	3.5	17	77	20	57	41	0	3	54	1.18
50248415--50248461	25	1.9	25	83	12	62	51	4	2	42	1.33
50249603--50249691	44	2.0	44	88	0	133	29	10	24	35	1.88
50257178--50257227	16	3.1	16	79	2	55	58	8	2	32	1.39
50258840--50258900	23	2.7	23	78	0	68	14	14	36	34	1.87
50283029--50283072	23	1.9	23	90	0	70	63	4	0	31	1.14
50287234--50287530	157	1.9	155	87	3	434	38	11	12	38	1.79
50290520--50290634	57	2.0	57	87	0	167	40	10	13	36	1.78
50302549--50302623	27	2.8	27	91	0	132	30	21	5	42	1.75
50304036--50304147	43	2.6	43	80	10	122	26	18	27	26	1.98
50306617--50306765	42	3.5	42	78	3	149	38	16	23	20	1.92
50306608--50306770	84	1.9	84	81	4	195	39	17	22	20	1.92
50313629--50313664	18	1.9	18	88	5	54	58	2	0	38	1.13
50323390--50323462	31	2.4	29	80	8	83	42	6	9	41	1.64
50323390--50323485	30	3.2	29	80	11	95	42	9	9	38	1.69
50323573--50323606	8	4.4	8	88	7	52	70	0	2	26	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50323573--50323604	15	2.1	15	94	0	55	71	0	3	25	1.00
50324855--50325268	220	1.9	220	82	3	519	25	22	28	23	1.99
50334567--50334630	31	2.0	32	85	14	89	40	1	1	56	1.18
50344040--50344071	15	2.1	16	94	5	57	71	15	6	6	1.26
50344096--50344182	27	3.2	27	87	4	113	32	20	29	17	1.95
50344107--50344187	27	3.0	27	90	3	119	33	22	28	16	1.95
50344854--50344916	19	3.3	19	68	0	63	41	9	3	46	1.52
50344951--50344984	16	2.1	16	88	5	50	47	0	17	35	1.48
50345471--50345532	26	2.4	26	88	0	88	46	1	12	38	1.52
50352581--50352649	15	4.6	14	75	18	50	63	0	0	36	0.94
50352584--50352668	44	2.0	44	82	8	106	61	0	0	38	0.96
50360137--50360180	21	2.1	21	82	0	52	54	0	6	38	1.27
50368387--50368449	32	2.0	32	83	0	81	25	11	19	44	1.83
50370321--50370417	47	2.1	47	98	0	185	20	9	23	46	1.79
50378600--50378652	16	3.2	16	78	19	56	30	1	13	54	1.49
50383216--50383253	18	2.1	18	85	9	51	57	0	0	42	0.98
50388140--50388179	19	2.1	19	85	0	53	42	2	0	55	1.13
50399878--50400068	104	1.8	103	89	1	301	22	24	31	21	1.98
50399990--50400142	80	1.9	80	89	2	236	20	25	29	24	1.99
50399887--50400248	184	2.0	184	85	2	485	22	24	29	22	1.99
50400085--50400286	104	1.9	104	90	2	325	25	22	28	23	1.99
50401792--50401833	22	1.9	22	100	0	84	45	9	0	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50401854--50401900	13	3.5	13	80	13	60	40	0	0	59	0.97
50403383--50403430	9	5.1	9	82	5	51	31	0	0	68	0.90
50403381--50403422	10	4.6	9	85	11	50	33	0	0	66	0.92
50404511--50404618	15	7.2	15	69	12	87	43	7	23	25	1.79
50404504--50404618	30	3.8	30	97	0	203	44	6	23	25	1.78
50409187--50409263	15	5.1	15	69	12	68	44	6	23	25	1.77
50409180--50409263	30	2.8	30	96	0	150	45	5	23	25	1.75
50411606--50411648	23	2.0	22	90	9	70	55	0	2	41	1.12
50411652--50411699	22	2.2	22	92	0	78	39	10	2	47	1.49
50411720--50411766	13	3.5	13	80	13	60	40	0	0	59	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170