genome.fa.s16.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  60  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17564957--17565008	26	2.0	26	81	7	61	34	15	26	23	1.94
17565931--17565967	9	4.1	9	92	0	65	29	10	13	45	1.77
17573751--17573891	69	2.1	69	95	1	257	46	12	9	31	1.73
17577439--17577474	17	2.1	17	100	0	72	27	19	0	52	1.46
17578867--17578989	27	4.5	27	78	5	95	39	24	8	26	1.85
17578856--17578962	54	2.0	54	83	3	135	37	26	7	28	1.83
17586511--17586538	13	2.2	13	100	0	56	92	7	0	0	0.37
17586510--17586550	18	2.3	18	91	0	64	87	9	0	2	0.62
17586511--17586552	12	3.5	12	84	12	50	88	7	0	4	0.64
17587516--17587555	21	2.0	21	90	5	64	25	32	17	25	1.97
17587561--17587643	7	11.9	7	81	0	76	33	30	8	27	1.86
17587548--17587609	28	2.2	28	82	5	72	35	32	8	24	1.85
17587608--17587655	21	2.3	21	85	0	60	31	27	14	27	1.95
17592695--17592750	15	3.7	15	79	9	53	32	8	1	57	1.40
17592686--17592731	3	15.0	3	82	13	58	32	4	0	63	1.14
17597810--17597846	9	4.1	9	92	0	65	29	10	13	45	1.77
17597900--17597930	9	3.4	9	90	0	53	38	22	12	25	1.90
17598706--17598735	3	10.0	3	100	0	60	33	0	0	66	0.92
17598898--17598939	21	2.0	22	81	13	52	50	4	4	40	1.45
17619616--17619766	35	4.3	35	80	2	160	39	30	12	17	1.87
17628939--17628968	15	2.0	15	93	0	51	0	36	0	63	0.95
17629652--17629927	27	10.3	26	83	7	263	43	18	19	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17629652--17629927	80	3.4	79	84	5	331	43	18	19	18	1.88
17629652--17629927	54	5.1	54	79	10	307	43	18	19	18	1.88
17629652--17629926	107	2.6	105	81	9	331	44	18	19	18	1.88
17630280--17630397	28	4.2	28	91	1	184	24	22	21	31	1.98
17636530--17636573	22	2.0	21	83	12	54	6	31	0	61	1.22
17637255--17637464	27	7.6	27	77	9	192	42	20	19	17	1.89
17637255--17637403	81	1.8	81	87	5	221	42	18	20	18	1.90
17637821--17637904	28	3.0	28	91	0	132	23	23	21	30	1.99
17637817--17637944	61	2.2	56	77	8	130	24	22	23	29	1.99
17649185--17649218	17	2.1	17	88	5	52	58	11	14	14	1.63
17655204--17655234	13	2.4	13	100	0	62	77	6	0	16	0.97
17655196--17655232	19	1.9	19	94	0	65	78	8	0	13	0.96
17655240--17655273	7	4.7	7	85	7	50	82	0	17	0	0.67
17657457--17657969	43	11.9	43	68	9	238	29	20	24	25	1.99
17657447--17657796	129	2.7	130	92	0	576	29	20	24	25	1.99
17657586--17657969	173	2.2	173	91	0	624	29	20	25	25	1.99
17658088--17658129	21	2.0	21	95	0	75	38	21	16	23	1.93
17657957--17658260	152	2.0	152	90	0	482	31	20	22	25	1.98
17658109--17658702	261	2.3	262	92	0	974	29	20	23	26	1.99
17658109--17658702	131	4.5	131	92	0	938	29	20	23	26	1.99
17659863--17659899	19	1.9	19	94	0	65	21	27	37	13	1.91
17672601--17672860	41	6.4	41	76	6	224	23	28	12	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17672638--17672866	121	1.9	121	84	3	309	23	27	13	35	1.92
17672619--17672860	80	3.0	80	77	6	227	23	27	11	36	1.90
17680286--17680353	21	3.3	20	65	6	55	22	32	13	32	1.92
17680164--17680599	122	3.6	120	85	3	550	21	28	14	35	1.93
17680450--17680514	20	3.2	21	64	16	55	29	30	10	29	1.91
17680164--17680599	41	10.7	41	85	2	484	21	28	14	35	1.93
17688302--17688486	79	2.3	81	81	10	213	24	22	26	25	2.00
17688302--17688486	40	4.7	40	79	9	200	24	22	26	25	2.00
17698340--17698375	18	2.1	17	89	5	54	55	8	2	33	1.44
17698481--17698520	21	1.9	21	94	0	71	37	2	10	50	1.50
17710049--17710106	30	2.0	29	86	10	82	34	0	12	53	1.38
17711702--17711765	27	2.4	26	82	5	74	39	3	23	34	1.71
17711728--17711805	40	2.0	40	84	5	104	37	5	20	37	1.75
17711669--17711816	13	11.2	13	72	5	100	41	4	19	35	1.71
17712002--17712271	134	2.0	134	97	0	504	28	17	18	35	1.93
17724017--17724108	27	3.4	27	79	5	105	44	18	19	17	1.87
17725160--17725602	115	3.9	114	87	3	590	23	21	27	27	1.99
17725180--17725589	228	1.8	227	89	1	651	24	21	27	27	1.99
17727285--17727324	21	1.9	21	94	0	71	10	0	45	45	1.37
17728100--17728143	15	2.8	16	82	10	54	38	4	0	56	1.20
17728208--17728264	12	4.6	12	73	16	53	54	10	0	35	1.35
17728278--17729272	9	111.8	9	66	18	344	45	17	2	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17728780--17729200	25	16.1	25	72	15	232	45	20	1	32	1.62
17728799--17729283	16	29.5	16	68	18	154	45	20	1	32	1.62
17728778--17729241	71	6.8	68	69	17	166	45	20	1	32	1.62
17728864--17729013	62	2.4	62	100	0	300	46	19	1	33	1.59
17728926--17729247	150	2.2	147	85	8	417	45	20	2	32	1.63
17732099--17732158	21	2.9	21	89	0	66	31	16	45	6	1.74
17732607--17732815	42	5.0	41	86	6	294	25	18	20	35	1.95
17732607--17732815	85	2.5	84	88	4	305	25	18	20	35	1.95
17740562--17740591	13	2.4	12	94	5	51	36	0	0	63	0.95
17744581--17744623	21	2.0	21	86	8	61	11	18	6	62	1.50
17745563--17745595	7	4.7	7	85	14	50	72	0	15	12	1.12
17745563--17745603	21	2.0	21	85	9	57	70	0	14	14	1.16
17746837--17747384	89	6.2	88	89	2	560	31	16	23	28	1.96
17746907--17747388	133	3.6	132	85	2	536	32	16	23	27	1.96
17746837--17747578	178	4.1	178	80	7	781	31	17	22	27	1.97
17746836--17747599	222	3.4	221	85	6	924	31	17	22	28	1.96
17746907--17747599	89	7.6	89	80	7	604	32	17	22	27	1.96
17747328--17747449	61	2.0	61	95	0	217	29	20	19	30	1.97
17747389--17747578	45	4.2	45	84	1	265	32	20	20	26	1.97
17747239--17747533	150	2.0	150	92	0	491	32	18	20	28	1.97
17747150--17747616	239	2.0	239	86	1	650	32	17	21	28	1.96
17747704--17747888	44	4.2	44	65	8	124	29	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17747595--17747974	132	2.9	132	95	0	679	28	19	23	28	1.98
17753952--17754003	18	2.9	18	97	0	95	21	17	17	44	1.87
17758932--17758984	23	2.3	23	90	0	88	32	26	18	22	1.97
17760322--17760412	9	9.4	9	71	20	51	36	1	3	59	1.21
17760322--17760412	20	4.7	19	71	19	64	36	1	3	59	1.21
17760329--17760374	17	2.6	18	78	18	51	34	0	4	60	1.16
17760381--17760417	9	4.0	9	92	3	56	43	0	2	54	1.14
17761415--17761452	10	3.8	10	85	0	58	39	0	0	60	0.97
17769645--17769734	30	3.0	30	91	0	153	45	6	16	31	1.73
17772802--17772853	21	2.4	22	77	6	61	34	3	0	61	1.14
17772826--17772884	16	3.6	16	73	8	55	30	5	3	61	1.34
17774178--17774228	26	2.0	26	92	7	86	70	0	1	27	0.98
17774590--17774649	23	2.3	28	72	27	85	38	10	10	41	1.72
17774598--17774650	23	2.3	23	100	0	106	35	11	11	41	1.77
17775464--17775597	72	1.9	72	88	0	205	36	18	13	31	1.90
17776053--17776085	7	4.7	7	100	0	66	87	0	0	12	0.53
17776053--17776096	14	3.0	14	87	9	52	81	0	0	18	0.68
17776128--17776164	18	2.1	18	94	0	65	48	0	10	40	1.38
17778234--17778356	61	2.0	61	100	0	246	19	9	13	57	1.63
17783677--17783739	30	2.1	30	93	0	108	55	15	4	23	1.59
17792981--17793093	61	1.9	59	87	7	165	40	4	3	51	1.39
17795316--17795389	38	1.9	38	100	0	148	25	10	16	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17797495--17797551	16	3.5	17	71	7	55	59	1	7	31	1.34
17797838--17797891	22	2.4	24	78	12	60	72	5	5	16	1.23
17798662--17798717	10	5.7	10	83	16	73	76	1	1	19	0.96
17798664--17798708	14	3.1	14	84	15	65	77	2	0	20	0.87
17799364--17799745	129	3.0	128	82	5	430	26	21	20	31	1.98
17799628--17799850	90	2.5	90	80	5	249	23	23	21	31	1.98
17799543--17799830	45	6.5	45	79	4	221	24	24	21	29	1.99
17799852--17801135	259	4.9	259	85	3	1661	27	25	17	29	1.97
17800502--17800547	21	2.2	21	84	0	56	21	34	10	32	1.88
17800455--17800593	72	1.9	72	83	0	179	26	26	14	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170