genome.fa.s16.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  131  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39839861--39839907	16	2.9	16	93	0	85	40	6	34	19	1.77
39839887--39839983	44	2.2	44	88	5	142	32	5	29	31	1.80
39840140--39840273	18	7.9	18	69	17	90	57	1	0	40	1.13
39840155--39840395	38	5.9	40	66	22	121	53	2	1	41	1.23
39840191--39840246	15	4.0	15	73	17	57	55	0	0	44	0.99
39840201--39840379	26	7.3	25	67	22	85	53	3	1	41	1.24
39840196--39840394	59	3.3	59	72	19	214	54	3	1	41	1.22
39840174--39840395	120	1.9	120	98	0	426	53	3	1	42	1.25
39840174--39840380	64	3.4	61	71	20	180	53	3	1	42	1.26
39843125--39843156	17	1.9	16	93	6	55	75	0	12	12	1.06
39843844--39843871	14	2.0	14	100	0	56	42	7	42	7	1.59
39850363--39850404	22	1.9	22	85	9	59	40	11	0	47	1.40
39851199--39851254	19	2.9	19	69	10	51	37	0	3	58	1.15
39852611--39852664	24	2.3	23	84	15	74	37	0	0	62	0.95
39854487--39854514	12	2.3	12	100	0	56	17	25	21	35	1.95
39854685--39854792	41	2.6	41	82	1	126	25	17	27	29	1.97
39854699--39854817	41	2.9	41	83	1	139	23	17	26	31	1.97
39855221--39855267	14	3.3	15	79	8	53	29	0	29	40	1.57
39855254--39855294	21	2.0	20	90	4	64	19	0	39	41	1.52
39855262--39855367	22	4.8	22	75	12	85	23	1	40	33	1.66
39855292--39855332	15	2.8	15	82	13	50	19	2	46	31	1.63
39855548--39855618	21	3.3	22	84	7	83	21	0	42	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39855559--39855654	36	2.7	36	83	3	113	25	0	39	35	1.56
39855580--39855621	15	2.9	15	96	3	77	19	0	45	35	1.50
39855598--39855646	21	2.3	21	82	0	53	28	0	36	34	1.58
39855251--39855787	289	1.8	292	83	9	709	29	1	26	42	1.64
39856718--39856758	7	6.0	7	88	5	66	0	58	0	41	0.98
39857947--39857974	12	2.3	12	100	0	56	32	7	10	50	1.64
39859271--39859377	44	2.5	44	82	10	123	21	14	28	35	1.93
39859380--39859476	43	2.3	43	85	3	124	22	14	30	31	1.94
39859269--39859480	107	2.0	110	85	2	295	22	15	28	33	1.94
39860035--39860060	2	13.0	2	100	0	52	0	50	0	50	1.00
39863937--39863980	16	2.7	15	83	13	52	31	6	2	59	1.36
39868411--39868442	7	4.4	7	96	4	55	0	12	0	87	0.54
39873693--39873803	51	2.2	52	85	1	143	44	8	18	29	1.78
39880904--39880969	21	3.1	21	82	8	89	27	27	22	22	1.99
39888497--39888571	37	2.0	37	97	0	141	16	14	24	45	1.84
39890057--39890082	11	2.4	11	100	0	52	30	0	0	69	0.89
39893043--39893075	16	2.0	17	88	5	50	27	3	18	51	1.60
39899237--39899269	16	2.1	16	88	5	50	72	3	9	15	1.21
39899300--39899337	16	2.4	16	90	0	58	31	0	34	34	1.58
39899316--39899410	44	2.1	45	90	1	147	33	5	27	33	1.79
39899571--39899605	18	2.0	17	88	5	52	54	0	0	45	0.99
39899458--39899772	155	2.0	157	96	1	589	44	3	4	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39899706--39899747	15	2.7	16	82	14	52	52	2	0	45	1.13
39899715--39899756	15	2.9	15	82	10	52	52	0	0	47	1.00
39899704--39900012	119	2.6	120	90	5	475	50	4	2	42	1.37
39899825--39899876	15	3.6	15	80	12	56	53	1	0	44	1.11
39899965--39899998	17	2.0	17	88	11	52	52	0	2	44	1.16
39900081--39900224	47	3.1	44	68	18	114	47	5	2	44	1.41
39900015--39900219	91	2.3	88	89	3	302	47	3	2	45	1.36
39900062--39900200	47	3.0	47	69	17	146	50	4	1	43	1.30
39901617--39901643	11	2.5	11	100	0	54	51	18	7	22	1.70
39909311--39909377	34	1.9	35	87	3	100	44	14	8	31	1.76
39911110--39911151	19	2.2	19	83	8	50	59	0	2	38	1.10
39911390--39911507	56	2.1	58	82	7	143	27	6	4	61	1.41
39911493--39911517	13	1.9	13	100	0	50	24	8	0	68	1.16
39911490--39911539	21	2.4	20	87	9	73	30	8	0	62	1.24
39911482--39911529	21	2.3	21	92	0	78	29	6	0	64	1.18
39911596--39911623	13	2.2	13	100	0	56	14	7	0	78	0.95
39911627--39911831	89	2.3	90	86	5	274	33	8	20	37	1.83
39911942--39911999	30	1.9	29	82	6	71	17	15	6	60	1.56
39912090--39912146	9	6.6	9	71	20	50	38	1	0	59	1.08
39917807--39917836	8	3.8	8	100	0	60	50	0	0	50	1.00
39923196--39923248	21	2.5	21	78	0	70	47	3	5	43	1.45
39923759--39923795	3	12.0	3	94	5	65	64	0	2	32	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39925323--39926567	45	27.9	45	81	1	1015	29	22	16	31	1.96
39925353--39926567	89	13.6	89	82	3	1136	29	22	16	31	1.96
39925325--39926567	134	9.3	133	84	3	1352	29	22	16	31	1.96
39927860--39927915	28	2.0	28	86	13	80	14	23	0	62	1.31
39927857--39927914	7	8.3	7	77	12	57	13	20	0	65	1.26
39933163--39933196	3	11.0	3	93	6	59	64	0	2	32	1.08
39938866--39938911	15	3.0	16	78	9	51	65	0	4	30	1.12
39940693--39940728	17	2.0	19	89	10	58	38	0	0	61	0.96
39943956--39943990	11	3.3	11	84	8	54	11	11	11	65	1.47
39946458--39946483	11	2.4	11	100	0	52	0	15	0	84	0.62
39949861--39949955	26	3.5	26	68	13	73	43	1	3	52	1.24
39959037--39959091	23	2.2	24	84	15	69	38	9	7	45	1.64
39959539--39959681	72	2.0	72	94	0	250	28	20	16	34	1.95
39967582--39967878	50	5.8	50	80	2	263	28	20	27	23	1.99
39967582--39967827	100	2.4	103	83	4	291	27	20	28	23	1.99
39974410--39974553	50	2.9	50	85	0	198	28	21	28	21	1.99
39981441--39981535	44	2.2	45	83	11	117	31	22	17	28	1.97
39982680--39982730	23	2.2	23	92	0	84	41	21	9	27	1.84
39982766--39982812	23	2.0	23	91	0	76	53	0	21	25	1.46
39985613--39985712	45	2.2	45	83	1	130	37	7	1	55	1.34
39986075--39986215	70	2.0	71	95	1	257	27	17	19	35	1.94
39991263--39991328	13	5.5	13	72	20	72	50	13	0	36	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39991263--39991337	23	3.3	23	94	0	123	50	13	0	36	1.42
39991461--39991498	18	2.1	18	95	0	67	18	23	13	44	1.85
40004211--40004249	18	2.3	18	86	8	55	43	12	5	38	1.65
40004406--40004436	15	2.1	15	93	0	53	25	32	6	35	1.82
40008548--40008586	18	2.3	18	86	8	55	43	12	5	38	1.65
40008743--40008773	15	2.1	15	93	0	53	25	32	6	35	1.82
40013028--40013064	9	4.1	9	92	0	65	29	10	13	45	1.77
40013118--40013148	9	3.4	9	90	0	53	38	22	12	25	1.90
40035651--40035836	50	3.8	49	80	5	187	22	26	22	28	1.99
40044706--40044750	19	2.3	20	92	3	74	66	0	33	0	0.92
40044710--40044769	24	2.5	24	94	0	102	66	0	33	0	0.92
40044704--40044772	10	5.5	13	67	26	51	66	0	33	0	0.92
40045010--40045145	40	3.4	40	83	4	159	38	21	21	19	1.94
40045178--40045375	41	4.9	41	91	1	299	25	21	22	30	1.98
40045468--40045526	26	2.3	26	82	5	75	57	5	10	27	1.52
40045869--40045985	62	1.9	62	84	7	157	30	0	22	46	1.58
40046121--40046168	21	2.3	20	79	10	60	33	0	37	29	1.58
40051921--40052076	43	3.6	42	84	5	188	26	21	25	26	1.99
40052004--40052096	43	2.3	40	81	9	109	29	21	25	23	1.99
40052320--40053055	152	4.8	148	81	9	824	51	6	11	30	1.64
40052320--40053055	153	4.8	153	81	9	848	51	6	11	30	1.64
40052320--40053157	305	2.8	305	88	5	1246	51	6	10	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40054546--40055071	259	2.0	259	98	0	1007	28	18	23	30	1.97
40055831--40056402	77	7.4	77	93	0	1000	41	9	7	41	1.66
40059384--40059430	23	2.0	23	84	8	60	55	14	2	27	1.51
40060678--40060734	17	3.2	17	72	15	53	57	0	0	42	0.98
40061377--40061428	22	2.3	22	79	20	63	46	13	1	38	1.54
40061381--40061426	22	2.0	24	87	12	69	43	15	2	39	1.59
40061377--40061431	24	2.5	21	76	21	58	47	12	1	38	1.52
40064053--40064095	21	2.0	22	86	13	63	44	0	13	41	1.44
40064053--40064096	20	2.1	21	84	12	56	45	0	13	40	1.44
40064165--40064341	64	2.8	64	85	6	229	33	7	18	40	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170