genome.fa.s16.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  40  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11369996--11370028	15	2.2	15	94	0	57	9	15	0	75	1.03
11390104--11390204	48	2.1	47	89	7	150	43	8	23	23	1.82
11391499--11391576	39	2.0	39	94	0	138	29	16	26	26	1.97
11391835--11392131	152	1.9	153	97	0	560	29	13	24	32	1.93
11394028--11394084	30	1.9	30	88	0	87	42	5	22	29	1.76
11394258--11394433	51	3.5	51	77	8	180	26	17	25	31	1.97
11398316--11398351	14	2.7	13	91	4	54	75	2	22	0	0.94
11400383--11400488	54	2.0	54	84	3	142	29	20	31	18	1.97
11400818--11400914	48	2.0	48	87	0	140	45	8	23	22	1.79
11402165--11402300	50	2.7	51	89	4	213	25	16	28	30	1.96
11402223--11402304	26	3.2	26	63	27	66	24	14	28	32	1.94
11402311--11402399	45	2.0	45	88	0	133	24	16	24	33	1.96
11407673--11407734	32	1.9	33	86	3	90	51	1	11	35	1.47
11407928--11408059	22	6.0	22	76	6	115	50	9	9	31	1.65
11407928--11408058	44	3.0	44	88	6	194	50	9	9	31	1.65
11408020--11408093	27	2.9	26	88	6	107	45	4	10	39	1.58
11407926--11408096	21	7.4	24	73	13	87	48	7	9	33	1.65
11408098--11408147	3	17.0	3	76	12	50	64	4	2	30	1.23
11408555--11408612	22	2.6	22	84	7	73	43	17	3	36	1.66
11408568--11408665	19	4.8	19	85	9	106	38	16	8	36	1.78
11408602--11408664	21	3.1	21	90	9	112	38	14	9	38	1.78
11409016--11409486	217	2.2	219	84	3	601	26	23	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11409281--11409553	84	3.2	84	70	15	270	28	24	19	27	1.98
11409108--11409993	217	4.1	216	82	7	851	27	23	20	28	1.99
11409284--11409657	173	2.2	173	96	0	678	28	23	20	27	1.99
11409052--11409874	390	2.1	390	87	2	1152	27	23	20	28	1.99
11409284--11409872	173	3.4	175	85	6	570	28	23	20	28	1.99
11408975--11409916	44	21.7	44	68	15	304	27	23	20	29	1.99
11409195--11409993	390	2.0	389	85	3	1070	28	23	20	28	1.99
11409412--11410061	217	3.0	213	84	5	806	26	23	20	29	1.99
11410035--11410483	44	10.2	44	62	10	137	25	23	20	30	1.98
11409985--11410533	132	4.2	131	91	0	875	24	23	21	30	1.99
11413957--11414219	40	6.6	40	86	4	291	25	27	20	25	1.99
11414151--11414228	40	1.9	41	82	10	97	26	28	20	24	1.99
11419859--11420028	23	7.2	23	76	12	114	49	7	9	33	1.64
11419860--11420019	44	3.4	46	83	10	177	50	8	9	31	1.64
11419880--11420022	23	6.1	24	78	10	145	48	7	9	34	1.65
11419969--11420030	26	2.3	28	88	11	110	45	3	11	40	1.56
11420033--11420079	3	16.0	3	82	12	62	68	2	0	29	1.02
11420491--11420567	19	3.7	21	80	13	77	41	16	5	36	1.71
11420491--11420548	22	2.6	22	84	7	73	43	17	3	36	1.66
11420504--11420580	19	3.8	19	89	6	91	38	16	7	36	1.78
11421799--11421824	11	2.4	11	100	0	52	38	7	0	53	1.30
11421779--11421872	42	2.4	38	86	13	145	32	2	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11421810--11421910	28	3.3	30	86	9	125	37	1	0	60	1.08
11421840--11421894	10	5.5	10	78	10	60	41	1	0	56	1.10
11421878--11421917	21	1.9	21	89	0	62	37	2	0	60	1.11
11421877--11421931	21	2.5	20	80	13	56	38	1	3	56	1.28
11422913--11422970	29	2.0	28	83	9	73	34	6	3	55	1.44
11422920--11423068	60	2.5	60	83	3	167	27	14	8	49	1.72
11425217--11425297	30	2.7	30	84	1	108	40	9	19	29	1.84
11425161--11425353	89	2.1	91	82	3	248	44	12	16	26	1.83
11429774--11429799	11	2.4	11	100	0	52	46	0	0	53	1.00
11431172--11431304	71	1.9	71	84	6	180	36	9	6	48	1.59
11436426--11436499	37	2.0	37	100	0	148	45	13	8	32	1.73
11438943--11439045	54	1.9	54	84	4	136	22	24	26	27	2.00
11438943--11439057	54	2.1	54	80	6	126	21	26	26	26	2.00
11455150--11455201	20	2.5	20	79	14	61	42	9	5	42	1.61
11460086--11460119	17	2.0	17	94	0	59	41	26	5	26	1.78
11469952--11470389	44	9.9	43	73	11	307	31	19	23	26	1.98
11469954--11470882	45	20.7	45	69	11	298	30	18	22	27	1.98
11469942--11470431	178	2.8	178	91	0	750	30	19	23	26	1.98
11470045--11470287	133	1.8	134	81	0	308	29	19	25	25	1.99
11470387--11470616	89	2.6	90	79	2	277	27	21	24	26	1.99
11470568--11470882	96	3.4	94	74	9	315	32	16	20	29	1.95
11471127--11471155	14	2.0	15	93	6	51	82	6	0	10	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11471176--11471209	13	2.6	13	85	0	50	52	29	2	14	1.56
11479144--11479204	30	2.0	30	93	0	104	19	32	27	19	1.96
11480028--11480057	14	2.1	14	100	0	60	43	0	13	43	1.43
11485685--11485714	14	2.1	14	100	0	60	43	0	13	43	1.43
11498209--11498244	19	2.0	19	89	10	58	19	11	5	63	1.46
11502782--11502826	20	2.2	20	88	0	63	71	8	13	6	1.31
11512572--11512600	13	2.2	13	100	0	58	24	20	20	34	1.97
11515406--11515430	13	1.9	13	100	0	50	40	24	4	32	1.73
11520945--11521003	9	6.4	9	81	11	66	40	25	11	22	1.88
11521076--11521164	39	2.3	39	84	2	124	19	2	28	50	1.59
11521143--11521172	13	2.3	13	100	0	60	16	0	43	40	1.48
11522983--11523094	41	2.7	41	83	0	134	23	22	23	31	1.99
11538605--11538671	22	3.1	21	72	16	64	43	22	22	11	1.86
11538793--11538868	27	2.8	26	84	11	91	21	22	19	36	1.95
11538821--11538882	27	2.3	27	83	5	72	27	19	14	38	1.90
11540868--11541166	152	2.0	152	93	1	510	26	31	12	29	1.93
11542645--11542787	27	5.3	27	87	0	178	23	19	18	39	1.93
11544001--11544565	282	2.0	282	100	0	1130	42	28	10	19	1.83
11545554--11545589	18	2.0	18	88	0	54	19	8	0	72	1.10
11546283--11546327	19	2.4	19	82	14	58	51	0	0	48	1.00
11546797--11546844	21	2.2	22	92	3	80	41	0	4	54	1.20
11546912--11547016	34	3.2	32	70	18	83	57	0	8	33	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11552514--11552716	91	2.3	89	83	3	237	34	15	20	29	1.93
11554318--11554346	9	3.0	10	90	10	51	20	20	0	58	1.39
11556642--11556716	20	3.8	21	70	19	54	66	4	6	22	1.32
11556641--11556680	21	2.0	19	85	9	53	60	7	7	25	1.50
11557164--11557200	14	2.6	14	86	0	56	40	0	0	59	0.97
11557170--11557206	20	1.9	18	89	10	56	40	0	0	59	0.97
11557480--11557547	33	2.0	35	88	11	106	48	1	1	48	1.19
11558062--11558122	31	1.9	32	86	3	88	42	3	8	45	1.50
11559957--11560075	62	1.9	62	84	0	157	18	26	27	27	1.98
11565157--11565186	13	2.4	13	94	5	53	63	0	0	36	0.95
11565406--11565444	19	2.0	21	85	10	55	69	5	10	15	1.34
11565608--11565684	19	3.7	21	80	13	77	41	16	5	36	1.71
11565608--11565665	22	2.6	22	84	7	73	43	17	3	36	1.66
11565621--11565697	19	3.8	19	89	6	91	38	16	7	36	1.78
11574360--11574410	19	2.6	20	82	17	63	58	3	0	37	1.16
11574380--11574418	20	2.0	19	85	5	51	61	2	0	35	1.10
11574390--11574442	24	2.1	26	83	13	67	58	3	0	37	1.16
11577259--11577343	34	2.5	35	78	5	93	43	14	7	35	1.72
11577276--11577341	17	3.9	17	83	0	87	43	13	6	36	1.69
11577960--11578008	18	2.7	18	83	0	62	51	22	2	24	1.59
11578269--11578379	29	3.6	29	81	11	123	46	15	4	33	1.66
11593242--11593291	10	5.2	10	90	7	68	20	0	4	76	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11593242--11593300	19	3.0	20	83	11	70	22	0	3	74	0.96
11593239--11593298	23	2.6	23	84	7	68	21	0	3	75	0.95
11593242--11593300	29	2.0	29	90	6	93	22	0	3	74	0.96
11593251--11593311	28	2.1	29	82	8	72	24	3	1	70	1.11
11595970--11596017	9	5.2	10	87	12	68	20	0	6	72	1.05
11595976--11596024	27	1.9	26	88	12	75	22	0	4	73	1.00
11607397--11607494	43	2.3	43	85	0	133	29	18	26	25	1.98
11618706--11618751	22	2.1	22	84	8	58	76	0	21	2	0.90
11619586--11619632	21	2.2	21	92	0	76	74	0	14	10	1.07
11619598--11619634	7	5.3	7	87	12	58	67	0	16	16	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170