genome.fa.s16.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  156  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46346347--46346449	51	2.0	51	88	3	154	36	16	18	28	1.92
46349621--46349654	14	2.4	14	90	0	50	47	38	0	14	1.45
46350278--46350314	7	5.3	7	93	0	65	16	27	13	43	1.85
46350305--46350367	33	1.9	33	93	0	108	31	17	17	33	1.93
46355892--46355920	15	1.9	15	100	0	58	13	34	17	34	1.89
46357966--46358034	25	2.7	26	77	4	77	30	4	4	60	1.35
46364089--46364117	15	1.9	15	100	0	58	13	34	17	34	1.89
46364934--46365003	33	2.1	33	82	10	81	61	12	1	24	1.40
46365024--46365058	14	2.5	14	90	0	52	65	5	0	28	1.15
46365878--46369673	1000	3.8	1000	97	0	6956	27	23	15	33	1.95
46376578--46376614	16	2.4	16	90	4	58	56	5	0	37	1.22
46392396--46392762	46	7.6	49	85	10	449	34	13	22	29	1.92
46392396--46392751	98	3.6	98	95	0	604	34	13	21	29	1.92
46392726--46392833	37	3.0	37	87	5	168	35	16	23	25	1.95
46401852--46401898	19	2.7	17	72	15	51	40	6	0	53	1.27
46404784--46405044	45	5.8	45	96	0	459	38	15	19	26	1.91
46405066--46405419	45	7.9	45	94	0	582	25	20	15	38	1.92
46405533--46405564	16	2.0	16	100	0	64	50	25	12	12	1.75
46406350--46406495	68	2.1	68	96	1	265	14	17	15	52	1.74
46406473--46406497	13	1.9	13	100	0	50	8	0	4	88	0.64
46411659--46411706	21	2.3	21	77	0	51	18	14	14	52	1.75
46411708--46411774	21	3.2	21	68	16	66	13	23	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46411721--46411847	21	6.1	21	66	8	82	14	25	17	42	1.87
46411632--46411830	42	4.7	42	84	1	202	15	22	16	46	1.84
46417975--46418079	44	2.5	40	76	15	113	31	29	4	34	1.78
46417973--46418082	45	2.6	44	81	8	131	31	29	5	33	1.80
46418063--46418114	16	3.2	16	84	10	70	32	36	0	30	1.58
46422687--46422765	34	2.4	33	81	6	106	37	3	1	56	1.25
46422734--46422772	20	2.0	19	85	14	53	41	5	0	53	1.23
46422734--46422772	19	2.0	20	85	14	55	41	5	0	53	1.23
46423679--46423763	42	2.0	43	93	2	145	32	21	18	27	1.97
46423841--46424021	85	2.1	85	84	2	229	33	23	18	24	1.97
46423841--46424021	42	4.3	42	83	2	211	33	23	18	24	1.97
46424323--46424390	21	3.2	21	87	0	100	1	45	20	32	1.60
46429804--46430040	9	26.9	9	76	10	222	32	1	19	46	1.58
46429834--46430021	104	1.8	104	89	2	297	31	1	20	46	1.58
46430052--46430226	57	3.1	57	92	0	287	40	6	7	46	1.57
46430087--46430226	20	7.3	20	70	15	116	39	5	7	47	1.55
46430052--46430271	114	1.9	114	81	7	268	41	5	8	43	1.59
46430055--46430649	208	2.9	208	94	0	1039	41	5	9	43	1.59
46430297--46430389	20	4.8	20	70	12	68	44	5	6	44	1.52
46430263--46430434	57	3.0	57	92	1	274	40	5	8	45	1.57
46430166--46430365	94	2.1	94	77	3	206	42	5	9	43	1.60
46430031--46430573	151	3.6	150	78	7	478	41	5	9	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46430279--46430465	57	3.3	57	81	8	202	41	5	9	44	1.59
46430471--46430696	57	4.0	57	90	0	328	41	3	8	46	1.53
46430509--46430664	20	8.2	19	71	14	90	41	3	8	46	1.52
46433790--46433834	23	2.0	23	95	4	83	22	4	42	31	1.73
46433908--46434243	146	2.3	146	82	4	390	36	21	15	26	1.93
46434037--46434377	147	2.3	147	80	2	362	37	21	14	26	1.92
46435636--46435941	166	1.8	166	80	2	373	28	29	19	23	1.98
46437625--46437725	46	2.1	47	78	10	109	28	18	16	35	1.93
46438691--46438736	18	2.6	17	86	10	65	26	6	4	63	1.38
46454355--46454419	34	1.9	34	87	12	98	40	7	4	47	1.53
46454502--46454537	17	2.1	17	94	0	63	66	2	0	30	1.06
46480711--46480801	44	2.1	44	85	4	121	26	21	5	46	1.73
46480803--46480831	15	2.0	15	93	6	51	0	10	0	89	0.48
46486181--46486234	13	3.5	17	73	21	57	35	1	0	62	1.06
46486189--46486272	40	2.1	40	91	4	134	35	2	0	61	1.09
46486181--46486238	29	2.1	28	80	6	73	37	1	0	60	1.07
46486251--46486294	20	2.2	20	88	4	63	36	0	0	63	0.95
46486206--46486294	40	2.2	40	75	18	96	38	1	0	60	1.04
46487192--46487232	16	2.6	16	84	3	57	41	26	12	19	1.87
46487440--46487480	16	2.6	16	88	3	66	41	17	17	24	1.89
46491469--46491494	2	13.0	2	100	0	52	50	0	0	50	1.00
46491838--46491867	3	10.0	3	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46491866--46491916	8	6.1	8	79	6	57	35	0	1	62	1.06
46497159--46497208	11	4.7	11	76	16	52	38	2	0	60	1.09
46497841--46497882	21	2.0	20	86	4	57	40	21	2	35	1.66
46498982--46499024	22	1.9	22	85	4	59	37	2	0	60	1.10
46499575--46499623	23	2.0	26	84	11	68	40	14	0	44	1.45
46515742--46515776	15	2.3	15	90	9	54	51	22	0	25	1.48
46516444--46516766	41	7.9	41	92	2	452	32	28	19	19	1.96
46516881--46517061	64	2.9	63	89	8	262	41	17	8	32	1.79
46520478--46520503	13	2.0	13	100	0	52	61	30	0	7	1.24
46521181--46521215	17	2.1	17	89	10	54	82	2	0	14	0.77
46521298--46521342	11	4.0	11	86	11	56	0	57	0	42	0.98
46521822--46521855	3	11.3	3	100	0	68	32	0	0	67	0.91
46521792--46522079	131	2.2	129	78	14	304	30	5	5	57	1.45
46525501--46525542	10	4.1	10	79	14	50	83	4	0	11	0.79
46527596--46527633	17	2.2	17	86	9	51	68	2	0	28	1.03
46545608--46545658	26	2.0	25	85	7	68	54	3	5	35	1.43
46545672--46545720	15	3.1	16	77	11	57	59	2	0	38	1.09
46547369--46547421	6	8.5	6	77	8	52	13	5	5	75	1.16
46547448--46547493	3	15.3	3	100	0	92	32	0	0	67	0.91
46549545--46549575	11	2.8	11	100	0	62	19	19	6	54	1.65
46550725--46550749	7	3.6	7	100	0	50	28	0	12	60	1.32
46551596--46551644	24	2.0	24	100	0	98	24	38	20	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46551921--46552518	23	26.1	23	72	15	413	49	23	0	26	1.54
46551914--46552509	45	13.0	45	75	14	358	48	24	0	26	1.54
46551916--46552517	159	3.8	155	83	9	705	49	23	0	26	1.54
46552268--46552382	52	2.2	52	90	3	178	50	25	0	24	1.50
46552313--46552337	7	3.6	7	100	0	50	48	40	0	12	1.40
46552320--46552509	67	2.8	68	88	4	287	49	26	0	23	1.50
46552512--46552755	116	2.1	116	93	1	409	40	9	6	44	1.62
46555181--46555549	125	3.0	125	91	0	569	34	23	14	28	1.93
46561632--46562254	207	3.0	207	97	0	1174	36	17	23	23	1.95
46569522--46569568	12	4.0	12	78	13	53	51	2	0	46	1.13
46572318--46572354	14	2.7	15	88	12	53	64	0	2	32	1.07
46573163--46573243	10	8.3	10	71	25	59	61	3	0	34	1.14
46573163--46573222	19	3.2	18	81	11	68	61	3	0	35	1.12
46573163--46573243	9	8.3	9	73	18	65	61	3	0	34	1.14
46573163--46573255	10	9.3	10	68	20	52	63	3	1	32	1.17
46573361--46573433	19	3.9	19	76	11	62	61	0	6	31	1.22
46573540--46573577	18	2.1	18	90	0	58	63	0	5	31	1.17
46573947--46573993	16	2.9	16	76	14	51	34	4	4	57	1.38
46573979--46574024	21	2.2	21	84	7	58	28	2	2	67	1.14
46576153--46576185	16	2.0	17	88	5	50	63	0	0	36	0.95
46584244--46584278	17	2.0	18	88	5	54	65	0	5	28	1.15
46584472--46584518	25	1.9	24	95	4	85	63	0	2	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46584753--46584812	28	2.1	29	84	3	77	48	1	1	48	1.21
46585190--46585241	23	2.2	23	86	6	68	55	1	0	42	1.10
46588044--46588081	4	9.5	4	94	0	67	52	21	0	26	1.47
46589516--46589549	18	1.9	17	94	5	59	29	0	8	61	1.26
46590214--46590881	151	4.5	150	87	7	923	30	10	7	51	1.62
46590214--46590843	295	2.1	297	87	6	911	30	10	7	51	1.63
46590214--46590881	150	4.5	149	87	7	928	30	10	7	51	1.62
46590922--46591005	44	1.9	44	90	0	132	28	22	26	22	1.99
46590922--46591033	44	2.6	43	79	12	120	28	25	22	24	1.99
46592667--46592716	3	16.7	3	82	15	59	26	2	2	70	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170