genome.fa.s16.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  84  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25965458--25966313	431	2.0	431	92	0	1446	21	19	21	37	1.95
25969053--25969109	21	2.6	22	78	13	64	40	28	7	24	1.81
25979435--25979475	22	1.9	22	90	5	66	36	2	0	60	1.10
25979756--25979888	28	4.8	28	87	0	176	26	25	12	35	1.92
25984786--25984812	14	1.9	14	100	0	54	33	22	14	29	1.94
25984990--25985044	20	2.8	20	80	0	65	52	10	5	30	1.59
25990353--25990406	21	2.5	20	82	11	63	16	3	3	75	1.08
25992403--25992471	29	2.4	29	95	0	120	47	13	7	31	1.69
25992934--25992960	14	1.9	14	100	0	54	33	22	14	29	1.94
25993138--25993192	20	2.8	20	80	0	65	52	10	5	30	1.59
25997073--25997257	40	4.7	40	78	7	182	24	21	27	25	1.99
25997126--25997280	79	2.0	79	81	7	181	25	20	27	26	1.99
26005044--26005225	79	2.3	80	83	6	210	24	22	28	24	2.00
26005044--26005227	40	4.6	41	83	7	213	24	22	28	25	1.99
26008700--26009125	1	426.0	1	78	0	429	88	2	3	5	0.66
26009178--26009295	1	118.0	1	78	0	101	87	0	7	4	0.71
26009178--26009295	14	8.3	14	79	10	114	87	0	7	4	0.71
26013111--26013202	46	2.0	46	80	4	105	26	22	32	18	1.97
26015366--26015456	36	2.5	37	82	15	118	24	28	19	27	1.99
26023913--26024095	79	2.3	81	83	7	223	24	22	27	24	2.00
26023914--26024097	40	4.6	40	82	9	207	24	22	28	24	2.00
26023966--26024120	79	2.0	79	83	7	199	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26044943--26045075	43	3.2	42	76	7	135	34	25	17	22	1.96
26045011--26045133	64	1.9	64	91	0	201	35	19	20	24	1.95
26045077--26045231	42	3.7	41	80	12	172	37	23	15	23	1.93
26044935--26045217	148	1.9	148	89	1	442	35	23	17	23	1.95
26045075--26045233	84	1.9	84	89	0	246	37	24	15	23	1.93
26045212--26045261	26	1.9	26	91	0	82	30	34	18	18	1.94
26048318--26048399	42	2.0	42	87	4	121	31	24	13	30	1.93
26050913--26051234	85	3.8	85	92	1	513	35	25	16	22	1.95
26050913--26051234	169	1.9	169	90	1	520	35	25	16	22	1.95
26051208--26051260	26	2.0	26	96	0	97	28	33	18	18	1.95
26051633--26051691	30	2.0	30	86	0	82	28	23	8	38	1.84
26066296--26066335	21	1.9	21	84	0	53	25	10	37	27	1.88
26077215--26077252	19	2.0	20	94	5	69	18	34	10	36	1.85
26077217--26077262	20	2.3	19	85	7	56	23	34	10	30	1.89
26080002--26080052	13	3.6	14	76	10	50	43	0	1	54	1.11
26080779--26080821	14	2.9	15	76	16	54	34	2	11	51	1.51
26080984--26081133	41	3.7	41	84	0	174	18	20	26	34	1.96
26084874--26084968	20	4.7	21	83	5	108	10	33	20	35	1.87
26084874--26085024	40	3.8	40	80	5	137	10	33	21	34	1.88
26084870--26085010	60	2.3	60	84	6	178	10	31	20	36	1.87
26084870--26085036	20	8.3	20	73	7	88	10	32	20	35	1.88
26086438--26086602	20	8.2	21	75	9	139	10	33	21	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26086436--26086576	60	2.3	60	85	6	187	10	32	20	36	1.87
26088016--26088276	69	3.8	69	80	4	267	37	23	21	16	1.93
26091779--26091805	14	1.9	14	100	0	54	29	14	22	33	1.94
26096408--26096455	21	2.3	20	82	13	53	37	0	4	58	1.18
26096842--26096948	25	4.4	25	81	11	134	37	2	8	51	1.47
26096842--26096963	25	5.0	24	79	13	119	37	2	9	50	1.47
26097399--26097634	89	2.6	88	80	9	242	38	19	8	33	1.81
26097644--26097702	27	2.2	27	84	6	75	66	1	3	28	1.18
26097664--26097702	17	2.3	16	83	12	51	69	0	2	28	1.02
26097912--26097937	13	2.0	13	100	0	52	23	7	0	69	1.14
26097948--26098016	27	2.4	30	81	11	92	36	4	0	59	1.17
26097969--26098035	19	3.5	19	74	10	57	29	2	0	67	1.06
26099066--26099118	22	2.4	22	87	9	72	52	1	1	43	1.23
26099092--26099130	16	2.4	16	91	0	60	48	2	7	41	1.45
26099206--26099267	9	7.1	9	89	7	92	33	1	11	53	1.46
26099114--26099299	102	1.8	101	82	9	243	41	4	9	45	1.56
26099203--26099256	25	2.2	25	89	0	81	37	1	9	51	1.45
26099255--26099390	68	2.0	68	95	0	245	37	5	9	47	1.61
26099380--26099410	3	10.7	3	93	6	55	29	0	0	70	0.87
26099378--26099410	17	1.9	17	100	0	66	27	0	0	72	0.85
26099383--26099412	14	2.1	14	100	0	60	26	0	0	73	0.84
26100968--26101001	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26105606--26105639	17	2.0	17	94	0	59	44	50	0	5	1.26
26127507--26127563	21	2.7	20	77	20	53	7	19	1	71	1.17
26127549--26127592	20	2.2	20	84	11	56	9	18	2	70	1.24
26131679--26131707	4	7.2	4	100	0	58	75	0	0	24	0.80
26145467--26145511	22	2.0	22	100	0	90	40	17	4	37	1.70
26146953--26146995	22	2.0	21	86	4	59	58	6	13	20	1.59
26153761--26153803	11	3.9	10	80	19	50	76	0	20	2	0.89
26153821--26153864	16	2.8	16	82	3	54	77	2	4	15	1.04
26154820--26155050	38	6.1	38	84	2	284	18	19	25	36	1.94
26156375--26156417	22	1.9	23	85	4	61	62	4	6	25	1.40
26157968--26158046	37	2.1	37	90	0	122	25	31	18	24	1.98
26158165--26158543	47	8.1	47	92	0	571	28	30	8	32	1.88
26161951--26162052	40	2.5	40	81	6	118	24	25	24	25	2.00
26162357--26162435	29	2.7	29	86	5	106	27	32	15	24	1.95
26162417--26162519	43	2.4	43	100	0	206	26	35	15	22	1.94
26164361--26164438	36	2.1	37	90	2	122	25	30	19	24	1.98
26164556--26164734	47	3.8	47	89	1	261	27	31	9	31	1.88
26164556--26164734	93	1.9	94	87	1	261	27	31	9	31	1.88
26164705--26164767	30	2.1	30	100	0	126	30	28	6	34	1.82
26164658--26164814	77	2.0	77	97	0	296	29	28	7	34	1.85
26164736--26164960	47	4.9	47	93	4	377	29	29	8	32	1.87
26164556--26164946	214	1.8	216	89	2	626	28	30	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26176961--26177040	40	2.0	41	87	2	117	26	17	27	28	1.98
26182142--26182171	15	2.0	15	100	0	60	33	26	26	13	1.93
26183899--26184030	39	3.3	40	84	8	146	24	21	27	26	1.99
26183899--26184052	78	2.0	79	81	8	181	25	21	26	26	1.99
26191022--26191206	79	2.3	82	83	7	229	24	27	22	24	2.00
26191003--26191206	40	5.1	40	81	8	229	24	27	22	25	2.00
26204892--26204944	27	1.9	28	84	3	72	67	0	22	9	1.19
26204905--26204946	22	2.0	22	90	4	68	69	0	19	11	1.19
26204913--26204958	21	2.1	22	84	4	58	67	2	23	6	1.25
26209319--26209372	28	2.0	27	85	3	72	12	14	9	62	1.53
26211494--26211541	20	2.4	20	89	0	78	41	16	20	20	1.90
26215970--26216017	20	2.4	20	85	0	69	43	16	18	20	1.88
26215970--26216024	20	2.7	19	81	10	65	40	16	20	23	1.91
26229341--26229385	20	2.2	20	92	0	72	35	13	24	26	1.92
26229341--26229404	20	3.2	20	84	4	67	34	14	26	25	1.94
26235910--26235959	18	2.5	20	87	9	68	74	2	20	4	1.08
26238826--26238873	25	1.9	25	95	0	87	8	27	33	31	1.86
26238648--26238906	99	2.6	102	89	6	386	18	21	29	30	1.97
26246081--26246130	26	1.9	26	95	0	91	14	24	32	30	1.94
26245899--26246163	104	2.6	104	89	3	410	20	20	29	29	1.97
26261334--26261363	16	1.9	15	93	6	51	13	36	3	46	1.60
26261722--26261760	20	2.0	20	89	0	60	43	12	12	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26261979--26262038	30	2.0	30	87	6	86	25	16	25	33	1.96
26265714--26265889	27	6.5	27	84	2	192	26	14	28	30	1.95
26265713--26265889	54	3.3	54	84	5	225	26	14	28	29	1.95
26265714--26265868	81	1.9	81	89	2	240	26	14	29	29	1.95
26265710--26265889	81	2.2	81	84	2	236	26	15	28	30	1.96
26268749--26268788	18	2.4	16	87	8	53	17	15	0	67	1.23
26268848--26268931	12	6.8	12	70	12	62	9	16	1	72	1.17
26268848--26268916	6	11.5	6	74	0	57	8	17	1	72	1.17
26268839--26268932	18	5.3	18	81	5	104	10	17	1	71	1.20
26268903--26268935	15	2.1	16	94	5	59	9	12	0	78	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170