genome.fa.s16.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  106  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32975166--32975197	16	2.0	16	93	0	55	40	12	15	31	1.85
32981366--32981442	14	5.0	15	71	20	52	42	14	9	33	1.77
32981382--32981421	20	2.0	20	90	0	62	50	12	10	27	1.72
32981370--32981436	34	1.9	35	90	3	109	46	13	8	31	1.74
32983951--32984195	114	2.1	114	92	0	400	42	8	13	35	1.75
32984089--32984268	94	1.9	94	88	4	270	40	10	12	37	1.76
32996384--32996477	47	2.0	47	93	2	163	31	29	7	30	1.85
32997611--32997635	13	1.9	13	100	0	50	32	4	0	64	1.12
33001917--33001975	6	10.0	6	76	9	59	76	0	18	5	0.97
33001880--33001938	29	2.0	30	86	3	84	71	3	3	22	1.16
33001917--33001973	11	4.9	11	79	16	62	77	0	17	5	0.95
33003799--33003860	24	2.6	24	92	0	106	38	11	24	25	1.88
33004186--33004709	44	11.8	43	72	8	289	30	17	22	29	1.97
33004190--33004490	88	3.4	88	76	5	345	30	17	23	28	1.97
33004281--33004536	133	1.9	134	83	2	327	30	16	24	28	1.96
33004549--33004796	44	5.8	42	73	13	145	28	21	23	27	1.99
33004544--33004755	44	4.9	43	75	11	157	28	20	23	27	1.99
33006360--33006384	13	1.9	13	100	0	50	36	0	0	64	0.94
33013420--33013515	45	2.1	46	84	7	124	45	3	8	42	1.50
33016980--33017293	162	1.9	163	94	0	549	34	15	13	36	1.87
33019141--33019176	18	2.0	18	94	0	63	8	38	0	52	1.32
33020812--33020837	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33021406--33021549	73	1.9	75	95	4	265	38	11	12	38	1.79
33028587--33028749	83	2.0	82	84	3	211	38	6	12	43	1.67
33031895--33031919	13	1.9	13	100	0	50	36	0	0	64	0.94
33036174--33036208	18	2.0	18	94	5	63	11	31	45	11	1.76
33041491--33041602	34	3.3	32	81	7	116	46	11	9	32	1.73
33045637--33045684	26	1.9	26	83	8	64	50	8	10	31	1.66
33045870--33046066	99	2.0	99	100	0	394	41	18	14	25	1.88
33049765--33049832	31	2.2	31	81	5	75	36	5	8	48	1.59
33054484--33054513	14	2.1	14	100	0	60	43	0	13	43	1.43
33059952--33060006	26	2.2	25	83	9	67	30	9	5	54	1.54
33060097--33060132	18	2.0	18	89	10	56	33	11	2	52	1.51
33060930--33060967	18	2.2	18	85	4	51	47	15	2	34	1.60
33062966--33063007	14	2.7	15	82	14	50	19	4	4	71	1.22
33063014--33063047	14	2.4	14	90	0	50	23	2	5	67	1.26
33063129--33063195	3	22.3	3	73	11	57	28	1	4	65	1.21
33063172--33063196	8	3.1	8	100	0	50	24	0	0	76	0.80
33064691--33064742	26	2.1	23	86	10	68	13	3	7	75	1.17
33064698--33064761	26	2.5	26	82	5	67	17	6	6	70	1.29
33076264--33076300	17	2.2	17	95	0	65	51	18	0	29	1.47
33076858--33076942	42	2.0	42	100	0	170	42	2	4	50	1.36
33077559--33077632	29	2.6	28	78	4	85	51	1	9	37	1.43
33077577--33077646	29	2.4	28	83	7	86	50	1	5	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33080738--33080892	43	3.6	42	71	11	127	25	16	25	31	1.97
33084740--33084833	48	2.0	48	83	8	120	23	12	23	40	1.89
33097554--33097587	17	2.0	17	100	0	68	35	17	29	17	1.93
33100577--33100624	18	2.7	18	84	12	64	70	2	0	27	0.98
33102046--33102254	97	2.1	100	90	3	325	44	13	17	24	1.84
33102267--33102693	110	4.0	108	83	8	530	35	15	14	35	1.87
33106901--33106948	18	2.8	17	75	6	51	18	6	12	62	1.50
33107859--33107971	32	3.5	32	87	6	156	44	9	8	37	1.69
33109077--33109111	13	2.7	13	100	0	70	8	22	37	31	1.85
33109848--33109935	41	2.1	41	97	0	167	37	12	27	22	1.90
33109874--33109940	21	3.2	21	73	12	75	34	13	31	20	1.92
33109858--33109920	20	3.1	20	73	13	74	36	11	31	20	1.88
33109865--33109929	20	3.2	20	75	12	78	40	12	27	20	1.88
33112104--33112128	12	2.1	12	100	0	50	76	0	16	8	1.02
33121495--33121739	10	25.6	9	69	18	97	62	3	2	32	1.23
33121494--33121640	9	15.4	10	70	14	55	63	2	2	31	1.20
33121472--33121534	22	3.0	21	86	4	74	71	3	1	23	1.09
33121623--33121694	21	3.5	21	76	14	71	56	2	2	37	1.28
33121665--33121720	19	2.8	20	76	13	62	64	3	3	28	1.27
33121636--33121730	21	4.8	20	75	13	81	61	3	2	33	1.24
33121665--33121739	38	1.9	39	89	7	118	64	4	2	29	1.26
33122234--33122263	5	6.0	5	100	0	60	40	20	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33125645--33125717	30	2.4	30	90	0	110	26	13	16	43	1.85
33125894--33125988	46	2.1	46	100	0	190	41	15	0	43	1.47
33126704--33127128	109	3.9	109	89	2	633	33	18	17	30	1.94
33126704--33127128	217	2.0	216	89	2	647	33	18	17	30	1.94
33129303--33129429	66	1.9	67	85	4	177	25	19	18	35	1.95
33129368--33129722	100	3.6	99	91	1	532	24	23	22	30	1.99
33129543--33129865	149	2.2	150	86	2	454	26	20	22	31	1.98
33129700--33130008	99	3.1	99	83	0	375	26	22	21	30	1.98
33129451--33129970	249	2.1	248	87	1	736	24	21	22	31	1.98
33129709--33130002	100	3.0	98	86	2	381	26	21	21	30	1.98
33129996--33130467	44	10.7	44	65	14	150	26	23	18	31	1.98
33129990--33130467	132	3.6	132	89	2	640	26	23	19	30	1.98
33131562--33131586	4	6.2	4	100	0	50	76	0	0	24	0.80
33132923--33132960	10	3.8	10	82	10	51	0	15	0	84	0.63
33132925--33132966	20	2.0	22	90	9	70	0	19	0	80	0.70
33136607--33137140	109	4.9	109	90	0	811	34	18	17	29	1.94
33141306--33141340	6	5.8	6	100	0	70	82	0	17	0	0.66
33145298--33145357	17	3.8	16	73	22	54	35	8	3	53	1.48
33148687--33148722	7	5.1	7	89	0	54	41	52	0	5	1.24
33148704--33148800	35	2.8	35	82	0	113	36	37	7	19	1.80
33149441--33149497	7	8.1	7	76	7	62	33	33	12	21	1.90
33149439--33149515	21	3.7	21	75	0	73	32	33	11	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33149889--33150073	93	2.0	94	89	3	284	38	7	23	30	1.82
33150681--33150715	15	2.4	15	90	4	54	48	0	8	42	1.33
33150710--33150751	18	2.3	18	84	8	50	35	0	4	59	1.19
33152018--33152060	7	5.9	7	84	10	59	69	2	0	27	1.00
33152018--33152061	14	2.9	16	90	6	65	70	2	0	27	0.99
33152015--33152060	23	2.0	23	86	0	65	69	2	0	28	1.00
33155701--33155756	19	2.9	19	76	10	60	51	7	0	41	1.29
33164684--33164728	20	2.2	19	84	11	54	37	40	0	22	1.54
33165398--33165426	14	2.0	15	93	6	51	62	0	13	24	1.32
33165728--33165796	29	2.4	28	83	9	86	34	1	23	40	1.64
33165986--33166043	29	2.0	29	83	6	73	34	18	13	32	1.91
33178931--33178971	21	1.9	22	90	5	66	48	0	9	41	1.36
33179300--33179363	26	2.4	27	92	5	103	42	10	0	46	1.39
33179370--33179401	16	1.9	17	93	6	57	68	18	6	6	1.32
33180022--33180074	18	3.1	18	81	10	67	41	13	0	45	1.43
33180028--33180077	15	3.1	15	85	8	64	44	14	0	42	1.44
33180085--33180201	19	5.2	23	61	32	56	43	0	16	40	1.48
33180121--33180198	26	3.3	26	67	29	82	42	0	15	42	1.47
33180083--33180216	45	3.0	45	98	0	259	44	0	16	39	1.48
33185492--33185562	24	3.0	24	79	4	63	26	21	18	33	1.96
33199899--33199923	13	1.9	13	100	0	50	32	16	8	44	1.76
33199934--33200013	26	3.0	26	68	18	65	35	15	5	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33199934--33200062	54	2.4	52	81	7	136	34	17	3	44	1.66
33200024--33200053	13	2.3	13	94	0	51	36	20	3	40	1.69
33209810--33209886	37	2.1	37	100	0	154	46	5	14	33	1.66
33212934--33212965	16	2.0	16	93	0	55	25	15	0	59	1.36
33213089--33213187	46	2.2	43	82	8	110	32	26	18	23	1.97
33213193--33213383	51	3.8	50	76	11	201	30	27	16	25	1.96
33216172--33216265	47	2.0	48	85	2	127	34	24	13	27	1.93
33219395--33219589	102	1.9	102	89	2	302	38	15	9	36	1.80
33225832--33225866	10	3.2	11	88	12	54	17	37	0	45	1.48
33225849--33225901	22	2.4	22	93	3	88	26	30	0	43	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170