genome.fa.s16.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  67  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19989171--19989216	18	2.6	19	80	10	53	54	10	0	34	1.36
19995243--19995276	15	2.3	15	89	0	50	67	0	29	2	1.05
20004278--20004304	14	1.9	14	100	0	54	33	22	14	29	1.94
20004974--20005048	33	2.2	34	90	2	116	41	14	6	37	1.72
20011672--20011731	31	2.0	31	84	9	81	65	3	25	6	1.33
20014104--20014552	47	9.6	47	91	4	728	29	29	8	32	1.86
20014104--20014552	92	4.8	93	93	2	683	29	29	8	32	1.86
20014776--20014918	40	3.6	40	82	7	166	26	27	21	24	1.99
20018767--20019371	40	15.1	40	89	0	814	27	26	20	26	1.99
20020821--20021320	47	10.6	47	94	2	867	29	30	8	32	1.86
20021545--20021635	39	2.3	40	88	5	141	27	27	20	24	1.99
20032848--20032900	22	2.4	22	96	0	97	43	0	9	47	1.36
20043703--20043741	14	2.8	13	85	14	51	74	2	20	2	1.06
20044967--20044991	6	4.2	6	100	0	50	16	16	36	32	1.90
20050085--20050247	50	3.2	50	77	10	154	43	12	14	30	1.81
20052877--20052953	20	3.9	19	80	10	75	29	15	28	25	1.96
20052877--20052953	40	1.9	39	82	12	95	29	15	28	25	1.96
20054790--20054880	6	15.2	6	73	8	78	5	17	2	74	1.11
20054778--20054886	30	3.5	30	69	13	78	5	17	2	74	1.13
20054770--20054880	54	2.0	55	82	5	136	6	17	2	73	1.15
20059123--20059214	18	5.4	18	69	17	63	10	21	2	65	1.35
20059112--20059192	30	2.7	29	81	7	99	12	23	1	62	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20061791--20061884	40	2.4	39	83	1	107	24	18	32	24	1.97
20061820--20061886	20	3.3	20	93	0	107	23	17	32	25	1.97
20063136--20063202	20	3.4	20	83	6	75	28	19	23	28	1.98
20063594--20063631	20	1.9	20	100	0	76	44	13	21	21	1.85
20066711--20066785	18	4.2	18	70	11	64	9	16	2	72	1.22
20066669--20066785	6	19.0	6	66	6	56	7	17	3	70	1.25
20066725--20066782	30	1.9	30	85	0	80	10	15	1	72	1.19
20070674--20070898	40	5.7	40	84	5	269	24	22	27	25	2.00
20070674--20070931	79	3.3	79	83	5	256	25	21	27	25	2.00
20072502--20072570	20	3.5	20	76	7	77	27	15	30	26	1.96
20075769--20075812	22	2.0	21	82	4	52	40	11	20	27	1.86
20083556--20083649	46	2.0	46	97	0	179	23	20	22	34	1.97
20084577--20084618	16	2.6	16	88	0	57	28	28	11	30	1.92
20099643--20099681	20	1.9	21	89	5	62	23	28	12	35	1.91
20100071--20100096	13	2.0	13	100	0	52	46	0	7	46	1.31
20101209--20101260	11	4.8	11	83	2	61	80	1	3	13	0.93
20101229--20101258	12	2.5	12	94	0	51	90	0	3	6	0.56
20101208--20101257	20	2.4	21	83	6	66	82	2	4	12	0.90
20102211--20102309	6	16.0	6	69	10	65	71	3	20	5	1.18
20102271--20102308	13	2.8	13	82	17	51	73	0	18	7	1.06
20102328--20102394	18	3.9	17	74	20	50	59	4	25	10	1.49
20102313--20102393	35	2.3	34	81	12	92	58	4	23	13	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20102327--20102376	17	2.9	17	77	8	57	62	4	24	10	1.44
20103641--20103679	20	1.9	21	89	5	62	23	28	12	35	1.91
20104069--20104094	13	2.0	13	100	0	52	46	0	7	46	1.31
20106158--20106272	50	2.2	52	78	4	135	37	13	14	33	1.86
20108496--20108535	20	2.0	21	85	5	55	32	17	15	35	1.91
20108614--20108686	34	2.1	35	92	2	121	34	9	15	41	1.79
20108667--20108705	19	2.1	19	95	0	69	28	10	12	48	1.74
20108633--20108742	54	2.1	53	94	1	193	32	10	14	41	1.81
20108637--20108770	54	2.5	54	88	2	180	32	11	14	41	1.82
20110924--20111182	129	2.0	130	85	6	357	30	15	19	35	1.92
20112628--20112722	43	2.2	45	88	3	140	18	17	9	53	1.70
20119323--20119348	13	2.0	13	100	0	52	23	15	15	46	1.83
20121927--20121957	15	2.1	15	93	0	53	35	35	0	29	1.58
20122202--20122241	20	2.0	20	90	0	62	50	12	10	27	1.72
20123154--20123179	6	4.3	6	100	0	52	50	15	15	19	1.79
20134735--20134797	29	2.2	29	94	0	108	22	19	17	41	1.90
20147433--20147668	41	5.8	41	88	0	348	22	21	29	27	1.99
20148024--20148189	14	11.9	14	70	7	72	22	1	36	39	1.62
20148053--20148106	28	1.9	28	96	0	99	20	1	33	44	1.62
20148055--20148150	28	3.5	28	77	8	90	20	1	39	38	1.60
20148109--20148190	21	4.0	21	72	12	53	21	0	41	36	1.54
20148159--20148190	7	4.6	7	96	0	55	25	0	31	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20148297--20148338	16	2.5	17	92	7	68	54	0	0	45	0.99
20151334--20151655	168	1.9	168	85	2	441	27	9	14	47	1.76
20152986--20153254	43	6.3	43	77	6	199	25	17	26	30	1.98
20152988--20153208	86	2.6	86	79	7	227	25	18	28	28	1.98
20164772--20164950	39	4.6	38	83	5	198	21	29	14	34	1.93
20164810--20164911	19	5.3	18	67	13	60	21	31	13	33	1.92
20164771--20164994	78	2.8	78	81	4	252	21	29	14	34	1.93
20168457--20168496	20	2.0	20	90	0	62	45	15	5	35	1.68
20170331--20170380	11	4.5	11	82	0	64	12	2	48	38	1.52
20170331--20170380	22	2.3	22	85	0	73	12	2	48	38	1.52
20175122--20175161	20	2.0	20	85	5	53	22	10	5	62	1.46
20178092--20178190	39	2.5	39	78	0	108	29	9	21	40	1.84
20180768--20180858	39	2.3	39	88	3	139	23	29	16	30	1.96
20190518--20190570	25	2.1	25	96	0	97	20	13	22	43	1.86
20200828--20200856	15	1.9	15	100	0	58	27	3	6	62	1.37
20213986--20214028	13	3.3	13	86	0	59	51	13	11	23	1.74
20221902--20221931	15	2.1	14	93	6	51	40	13	16	30	1.87
20232909--20232946	18	2.1	19	85	5	51	84	2	5	7	0.86
20232909--20232962	17	3.1	17	81	10	56	81	3	5	9	0.97
20232927--20232964	11	3.5	11	85	3	51	81	7	2	7	0.96
20236457--20236497	7	6.0	7	82	5	57	24	29	0	46	1.53
20240701--20240799	44	2.2	45	83	1	128	23	17	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20241028--20241053	13	2.0	13	100	0	52	23	15	30	30	1.95
20249306--20249340	15	2.3	15	95	0	61	11	28	0	60	1.32
20251720--20251834	49	2.3	50	79	4	126	29	23	26	20	1.99
20252105--20252143	12	3.2	12	85	0	51	56	5	20	17	1.60
20259357--20259542	50	3.7	50	79	3	171	29	23	25	22	1.99
20259744--20259782	12	3.2	12	85	0	51	56	5	20	17	1.60
20265396--20265431	13	2.8	13	86	0	54	25	44	19	11	1.83
20271251--20271283	10	3.4	10	87	4	50	30	6	0	63	1.18
20278534--20278744	40	5.3	40	85	5	259	23	20	27	28	1.99
20278534--20278744	79	2.7	80	82	6	250	23	20	27	28	1.99
20288540--20288717	27	6.6	27	80	5	180	28	15	28	28	1.96
20288541--20288695	81	1.9	81	85	5	215	27	15	28	28	1.96
20288675--20288728	28	1.9	28	84	0	72	31	14	25	27	1.95
20290145--20290368	40	5.7	40	81	7	224	25	28	21	25	1.99
20290112--20290368	40	6.5	38	78	10	200	24	28	21	26	1.99
20290145--20290368	79	2.8	78	78	9	213	25	28	21	25	1.99
20290300--20290377	40	1.9	41	82	10	97	26	28	20	24	1.99
20297646--20297869	40	5.7	40	81	7	224	25	28	21	25	1.99
20297613--20297869	40	6.5	38	78	10	200	24	28	21	26	1.99
20297646--20297869	79	2.8	78	78	9	213	25	28	21	25	1.99
20297801--20297878	40	1.9	41	82	10	97	26	28	20	24	1.99
20300539--20300604	30	2.3	27	78	12	69	60	3	1	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20300572--20300620	17	2.7	19	81	12	75	57	8	0	34	1.29
20300668--20300727	10	5.9	10	81	11	77	53	0	0	46	1.00
20302267--20302296	15	2.0	15	100	0	60	40	6	13	40	1.71
20315074--20315169	47	2.1	47	98	2	185	48	13	4	33	1.61
20316223--20316362	19	7.5	19	70	9	90	20	22	25	32	1.98
20316224--20316374	37	4.0	37	77	9	153	19	21	25	33	1.97
20316356--20316493	43	3.2	43	73	3	125	24	17	15	42	1.88
20319571--20319633	4	15.8	4	93	0	108	49	23	1	25	1.59
20323971--20323999	14	2.0	15	93	6	51	41	13	20	24	1.89
20325367--20325399	13	2.6	13	90	4	50	69	3	0	27	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170