genome.fa.s16.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  96  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29878688--29878799	43	2.6	43	89	1	170	25	16	25	32	1.97
29881241--29881273	17	2.0	17	88	5	50	48	12	9	30	1.71
29882248--29882272	4	6.2	4	100	0	50	24	0	0	76	0.80
29884878--29884916	17	2.4	16	84	16	53	56	0	12	30	1.37
29886319--29886365	13	3.8	12	84	15	60	72	10	0	17	1.12
29887919--29887967	25	1.9	26	95	4	91	32	12	10	44	1.75
29891615--29891651	13	3.1	13	77	22	53	59	0	32	8	1.27
29891634--29891721	39	2.3	39	84	7	108	68	2	25	4	1.20
29893339--29893385	19	2.4	19	85	7	58	70	19	10	0	1.16
29897553--29897700	49	3.0	49	98	0	287	39	23	6	30	1.79
29906683--29906717	18	1.9	18	88	0	52	17	40	25	17	1.90
29915598--29915643	9	4.6	10	77	17	51	76	0	10	13	1.03
29921408--29921463	14	3.5	17	72	18	57	53	3	0	42	1.18
29922023--29922329	152	2.0	152	96	1	562	42	12	10	34	1.77
29929025--29929072	25	1.9	25	83	8	62	43	10	6	39	1.64
29930839--29930906	35	1.9	35	82	8	84	35	19	11	33	1.88
29933274--29934225	481	2.0	481	98	0	1850	28	19	18	33	1.96
29939300--29939349	22	2.4	22	86	6	68	30	8	2	60	1.37
29946444--29946474	5	6.2	5	92	0	53	38	0	3	58	1.15
29947779--29947818	16	2.5	16	100	0	80	25	5	5	65	1.34
29949202--29949586	203	1.9	205	79	3	445	52	7	7	32	1.57
29951612--29951649	16	2.2	18	90	9	62	42	10	5	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29969456--29969480	12	2.1	12	100	0	50	52	0	16	32	1.44
29974191--29974270	32	2.5	31	80	11	92	27	28	17	26	1.98
29975505--29975777	51	5.4	51	91	1	433	31	24	13	30	1.94
29975505--29975777	101	2.7	102	91	1	433	31	24	13	30	1.94
29975851--29975883	17	1.9	17	88	11	50	45	21	0	33	1.52
29978409--29978446	14	2.5	16	87	8	53	63	2	7	26	1.35
29983922--29984471	47	11.6	47	93	1	893	29	29	8	33	1.86
29983922--29984471	190	2.9	190	94	1	933	29	29	8	33	1.86
29986613--29986791	85	2.1	85	98	0	349	26	27	8	37	1.85
29988281--29988358	32	2.5	31	87	6	111	25	28	21	24	1.99
29990673--29990870	99	2.0	99	92	0	333	29	12	21	36	1.89
30001238--30001299	24	2.6	24	86	0	88	33	22	3	40	1.70
30020442--30020475	17	2.0	17	94	0	59	14	14	5	64	1.46
30025021--30025067	24	1.9	25	86	4	69	38	0	36	25	1.56
30025739--30026135	81	4.9	81	83	2	456	41	20	17	21	1.90
30025738--30026122	27	14.3	27	83	3	407	42	19	17	20	1.90
30036146--30036170	5	5.0	5	100	0	50	20	0	0	80	0.72
30036759--30036786	14	2.0	14	100	0	56	35	14	14	35	1.86
30037739--30037780	22	1.9	22	85	0	57	33	0	4	61	1.17
30050299--30050343	18	2.4	18	85	10	56	8	20	2	68	1.27
30050310--30050365	27	2.1	27	87	9	80	7	21	1	69	1.22
30052296--30052333	20	1.9	20	100	0	76	21	21	13	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30052531--30052569	9	4.1	10	83	9	55	51	10	5	33	1.58
30052531--30052569	19	2.1	19	95	0	69	51	10	5	33	1.58
30052523--30052646	54	2.3	54	88	0	185	45	12	8	33	1.72
30052585--30052623	19	2.1	19	90	0	60	51	12	7	28	1.67
30052722--30052761	20	2.0	21	85	5	55	35	15	17	32	1.91
30055400--30055504	28	3.8	28	85	2	131	23	28	11	36	1.90
30059637--30059709	34	2.1	34	100	0	146	27	8	31	32	1.86
30063955--30064009	25	2.2	25	96	3	103	29	18	20	32	1.96
30067842--30067889	23	2.1	23	84	0	60	39	35	8	16	1.79
30069653--30069787	66	2.0	66	97	0	252	20	27	14	37	1.91
30071474--30071505	16	2.0	16	93	0	55	40	43	9	6	1.62
30076479--30076528	17	2.8	18	84	6	66	28	20	8	44	1.79
30083283--30083318	17	2.1	17	89	0	54	72	0	5	22	1.05
30084803--30084836	16	2.1	16	100	0	68	47	0	0	52	1.00
30089025--30089134	54	2.0	54	91	3	177	26	10	25	38	1.87
30104162--30104209	3	16.0	3	100	0	96	33	0	0	66	0.92
30110144--30110184	21	2.0	21	81	18	50	21	26	19	31	1.97
30116856--30116895	16	2.5	16	91	0	62	47	2	7	42	1.45
30116884--30117082	66	3.1	66	91	5	313	40	5	9	44	1.60
30117149--30117192	24	1.9	24	90	9	74	61	2	0	36	1.09
30117798--30117823	11	2.4	11	100	0	52	65	0	0	34	0.93
30117934--30117988	21	2.7	21	91	2	85	67	12	3	16	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30117935--30117991	11	5.6	10	78	10	62	68	12	3	15	1.34
30118088--30118138	19	2.7	20	80	17	63	74	5	3	15	1.16
30118081--30118134	29	1.9	27	81	7	63	74	5	3	16	1.16
30118282--30118329	24	2.0	24	84	12	62	16	14	0	68	1.21
30118289--30118339	24	2.1	25	82	7	61	15	13	0	70	1.17
30125284--30125327	16	2.8	15	83	10	52	31	4	2	61	1.28
30127497--30127554	30	1.9	30	85	0	80	13	25	37	22	1.91
30128138--30128184	3	16.3	3	78	8	53	72	0	25	2	0.96
30128138--30128185	14	3.3	15	82	8	55	72	0	25	2	0.95
30128144--30128178	17	2.1	17	88	0	52	71	0	28	0	0.86
30128146--30128185	20	2.0	20	90	0	62	75	0	25	0	0.81
30135586--30135641	28	2.0	28	96	0	103	21	8	3	66	1.35
30136934--30137272	46	7.4	46	78	5	303	31	4	23	40	1.74
30136948--30137261	23	13.7	23	73	12	234	32	3	23	41	1.71
30141202--30141338	58	2.4	57	85	7	179	44	0	2	51	1.21
30161131--30161256	43	3.0	42	91	2	198	31	20	21	26	1.98
30161699--30161729	12	2.6	12	100	0	62	0	41	19	38	1.51
30161714--30161782	21	3.3	21	81	0	75	2	40	18	37	1.66
30167248--30167604	9	41.9	9	71	14	215	29	2	20	47	1.63
30167247--30167604	25	14.4	25	75	10	268	30	2	20	47	1.63
30167309--30167604	16	17.5	16	68	19	94	30	2	18	48	1.61
30167248--30167604	34	10.2	35	73	15	197	29	2	20	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30167432--30167504	37	2.0	37	97	0	137	31	2	16	49	1.60
30167601--30168025	213	2.0	213	98	0	823	42	8	9	40	1.68
30170681--30170943	116	2.3	116	81	3	278	35	18	17	28	1.93
30172448--30172602	41	3.8	40	80	6	132	32	24	21	20	1.97
30178379--30178431	17	3.1	17	88	2	79	15	45	26	13	1.82
30182088--30182163	39	1.9	39	83	0	98	46	23	2	27	1.66
30182219--30182370	66	2.3	67	87	2	207	39	20	7	32	1.80
30189723--30189882	85	1.9	86	88	1	241	38	16	20	25	1.92
30189752--30189938	85	2.2	85	81	1	212	39	17	19	24	1.92
30191180--30191269	6	15.0	6	100	0	180	83	0	0	16	0.65
30191180--30191267	1	88.0	1	67	0	50	84	0	0	15	0.63
30191762--30191809	23	2.1	23	88	0	69	39	12	18	29	1.88
30195070--30195165	50	1.9	51	82	6	124	38	5	19	36	1.75
30199658--30199843	27	6.9	27	79	4	187	43	20	16	19	1.88
30199666--30199843	81	2.2	81	82	2	214	43	19	16	20	1.88
30200537--30200576	17	2.4	17	95	0	71	12	20	47	20	1.81
30200763--30200832	30	2.4	28	78	4	86	28	15	10	45	1.78
30207277--30207306	15	2.1	14	93	6	51	56	20	3	20	1.56
30209999--30210056	27	2.1	27	81	6	64	37	22	15	24	1.93
30210632--30210704	27	2.7	27	79	8	69	27	8	21	42	1.81
30214322--30214347	12	2.2	12	100	0	52	30	0	0	69	0.89
30215285--30215362	27	2.9	26	85	12	113	44	25	12	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30216881--30216951	24	3.0	24	79	10	74	53	5	4	36	1.44
30219476--30219543	29	2.3	29	85	5	93	27	30	13	27	1.94
30219645--30219723	29	2.7	30	82	13	110	29	30	15	25	1.96
30227636--30227702	29	2.3	29	84	5	91	28	29	13	28	1.94
30227804--30227882	29	2.7	30	82	13	110	29	30	15	25	1.96
30232047--30232078	6	5.2	6	92	7	55	15	15	15	53	1.74
30232047--30232078	13	2.6	12	95	5	55	15	15	15	53	1.74
30232275--30232315	21	2.0	21	85	9	57	21	14	14	48	1.80
30235442--30235927	195	2.5	193	80	5	534	32	11	12	43	1.78
30235613--30235910	98	3.1	98	76	8	313	32	11	11	45	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170