genome.fa.s16.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  111  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34217062--34217158	46	2.1	46	100	0	194	28	11	16	43	1.83
34217506--34217535	15	2.0	15	93	0	51	40	0	3	56	1.16
34217452--34217541	26	3.5	26	68	19	64	43	0	4	52	1.21
34217472--34217557	26	3.3	24	71	17	73	45	2	3	48	1.32
34217669--34217719	16	3.2	16	85	0	66	25	21	7	45	1.79
34224521--34224698	46	3.9	46	80	2	169	32	17	21	28	1.96
34224524--34224698	92	1.9	92	81	0	215	32	18	21	28	1.96
34230317--34230363	24	2.0	23	87	4	67	19	36	0	44	1.51
34232087--34232378	114	2.6	112	82	6	306	26	23	25	24	2.00
34232196--34232399	112	1.8	113	87	3	304	25	21	25	27	1.99
34232314--34232551	73	3.3	73	79	1	264	29	19	22	27	1.98
34232679--34232703	10	2.5	10	100	0	50	56	0	8	36	1.29
34232696--34232726	12	2.6	12	100	0	62	45	0	6	48	1.28
34232896--34232963	22	3.1	21	77	8	73	16	5	41	36	1.72
34232991--34233047	15	3.8	15	77	9	53	26	1	28	43	1.65
34232975--34233019	23	2.0	23	95	0	81	24	2	28	44	1.66
34232983--34233039	8	7.6	7	75	13	51	28	1	26	43	1.65
34232991--34233047	30	1.9	30	85	0	78	26	1	28	43	1.65
34233077--34233129	14	3.9	13	83	9	61	13	3	33	49	1.60
34233139--34233226	28	3.1	27	73	12	79	23	0	26	50	1.50
34233218--34233429	103	2.1	103	90	1	336	28	4	28	38	1.76
34233250--34233453	103	2.0	102	80	5	234	31	3	27	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34233672--34233969	116	2.6	113	79	7	307	22	14	19	42	1.88
34237864--34238153	9	30.9	9	76	10	217	51	14	1	33	1.49
34237868--34238155	27	10.2	27	78	17	266	51	14	1	33	1.49
34241561--34241652	21	4.4	21	90	0	139	31	18	45	4	1.69
34243147--34243236	24	3.5	25	79	11	76	62	1	2	34	1.15
34243245--34243303	27	2.2	27	84	6	75	66	3	1	28	1.18
34243388--34243514	9	13.7	9	65	15	53	30	2	3	63	1.22
34243504--34243528	12	2.1	12	100	0	50	52	0	0	48	1.00
34249651--34249692	15	2.8	15	79	10	50	66	0	0	33	0.92
34258648--34258720	25	2.9	25	100	0	146	32	8	0	58	1.27
34260637--34260772	50	2.7	51	90	4	222	24	16	28	30	1.97
34260695--34260776	26	3.2	26	63	27	66	23	14	29	32	1.94
34260783--34260869	45	1.9	45	92	0	147	25	16	24	34	1.95
34263534--34263576	21	2.0	21	82	8	52	20	13	2	62	1.42
34264831--34264869	16	2.3	16	86	8	51	66	0	0	33	0.92
34265094--34265123	15	2.0	15	93	0	51	30	0	0	70	0.88
34269710--34269747	15	2.5	15	100	0	76	18	18	7	55	1.66
34276574--34276634	25	2.4	25	78	10	63	37	3	1	57	1.25
34278387--34278549	30	5.5	30	80	5	118	34	23	3	38	1.73
34278920--34278963	15	2.9	15	86	3	52	72	2	25	0	0.96
34279052--34279147	7	13.3	7	71	17	54	76	0	20	3	0.93
34279180--34279216	18	2.1	18	90	10	58	29	48	18	2	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34279421--34279486	11	6.1	11	79	13	66	80	0	19	0	0.72
34279421--34279486	17	3.7	18	82	11	82	80	0	19	0	0.72
34279421--34279477	20	3.0	20	85	7	75	82	0	17	0	0.67
34279422--34279485	25	2.6	25	85	7	94	82	0	17	0	0.66
34279600--34279638	22	1.9	20	85	15	53	23	0	2	74	0.94
34279951--34280108	17	8.8	17	74	12	138	29	14	11	44	1.80
34279950--34280035	36	2.4	35	86	1	118	32	15	10	41	1.81
34279951--34280108	35	4.4	35	81	9	158	29	14	11	44	1.80
34279951--34280089	54	2.6	54	84	5	165	30	14	11	43	1.80
34280006--34280144	35	3.9	37	77	12	139	33	11	10	43	1.76
34281025--34281072	5	9.2	5	86	8	69	37	0	2	60	1.09
34281848--34281897	18	2.8	18	81	0	55	40	0	4	56	1.18
34288432--34288481	5	10.2	5	91	4	84	38	0	2	60	1.09
34289262--34289311	18	2.8	18	81	0	55	40	0	4	56	1.18
34295417--34295475	8	7.6	8	78	14	61	84	10	5	0	0.76
34295419--34295481	14	4.7	13	81	13	58	84	9	6	0	0.79
34295417--34295481	22	2.9	22	82	8	78	84	9	6	0	0.77
34296360--34297978	151	10.6	148	86	6	1493	27	16	20	35	1.94
34296359--34297978	77	21.1	75	85	6	1591	27	16	20	35	1.94
34298145--34298304	30	5.4	29	77	7	162	31	26	3	38	1.74
34298671--34298714	15	2.9	15	86	3	52	72	2	25	0	0.96
34298801--34298856	10	5.8	10	89	4	71	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34298948--34298982	18	1.9	18	88	0	52	37	45	17	0	1.48
34299174--34299236	11	5.4	11	76	14	63	82	0	17	0	0.67
34299172--34299230	25	2.4	25	88	8	93	83	0	16	0	0.66
34299172--34299237	20	3.3	20	85	8	82	80	0	19	0	0.72
34299352--34299394	5	8.4	5	82	10	52	20	0	2	76	0.89
34299351--34299388	20	1.9	20	89	10	60	21	0	2	76	0.91
34299699--34299857	17	8.8	17	72	13	122	30	13	11	44	1.79
34299698--34299783	36	2.4	35	82	1	109	32	13	10	43	1.79
34299699--34299849	35	4.2	36	77	10	114	28	13	11	46	1.78
34299699--34299838	54	2.6	54	85	4	174	30	13	11	44	1.79
34299699--34299892	18	10.8	18	68	13	87	34	12	10	43	1.76
34307179--34307249	33	2.2	33	89	5	108	22	42	11	23	1.86
34308946--34309013	19	3.5	19	72	21	52	29	7	26	36	1.83
34315822--34315914	30	3.1	30	95	0	159	55	13	3	26	1.54
34318334--34318368	3	11.7	3	88	11	54	68	0	28	2	1.04
34321331--34321367	18	1.9	19	89	10	58	83	8	0	8	0.80
34323636--34323732	44	2.2	44	87	3	142	27	24	20	26	1.99
34323707--34323790	44	1.9	44	82	0	105	28	22	16	32	1.96
34324859--34324945	45	1.9	45	85	0	120	48	11	13	26	1.77
34325217--34325295	1	79.0	1	69	0	50	2	11	1	84	0.77
34325224--34325295	5	14.8	5	83	9	78	1	12	1	84	0.75
34325216--34325277	6	10.8	6	80	16	62	1	16	0	82	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34325218--34325283	11	5.9	11	80	16	73	3	13	0	83	0.76
34325223--34325295	34	2.1	34	85	11	105	1	12	1	84	0.74
34331447--34331506	30	2.0	30	83	3	75	41	3	35	20	1.68
34331799--34331829	9	3.4	9	90	0	53	38	22	12	25	1.90
34332788--34332823	17	2.2	16	95	5	63	13	11	41	33	1.80
34335728--34335929	106	1.9	106	84	6	275	30	18	19	31	1.96
34337643--34337887	69	3.6	69	75	6	264	50	14	11	23	1.75
34337649--34337911	136	1.9	136	88	1	393	48	14	12	25	1.77
34344249--34344288	20	2.0	21	85	5	55	40	32	0	27	1.57
34352331--34352366	3	11.7	3	94	5	63	30	0	0	69	0.89
34361704--34361729	6	4.3	6	100	0	52	30	0	15	53	1.42
34361935--34361978	21	2.1	20	84	16	54	56	13	4	25	1.56
34373372--34373485	59	1.9	59	96	0	210	29	28	8	32	1.87
34376050--34376104	27	2.0	28	85	3	76	49	0	9	41	1.34
34379265--34379488	67	3.3	65	79	9	211	33	16	25	25	1.96
34379265--34379500	68	3.5	67	79	8	214	31	16	26	25	1.96
34384180--34384246	35	1.9	34	85	8	91	67	4	22	5	1.31
34385001--34385051	22	2.4	22	75	15	54	37	0	15	47	1.46
34390910--34391014	20	5.2	20	75	4	104	39	22	26	11	1.88
34390913--34391015	40	2.6	40	85	3	154	39	22	26	11	1.88
34390995--34391125	22	6.0	22	70	17	76	45	13	22	18	1.84
34391032--34391119	44	2.0	44	82	8	108	45	11	22	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34392276--34392320	23	2.0	23	82	8	56	28	20	8	42	1.82
34393644--34393670	3	9.0	3	100	0	54	0	33	0	66	0.92
34393648--34393689	12	3.2	13	86	10	50	0	19	0	80	0.70
34398028--34398059	15	2.2	14	94	5	55	59	3	0	37	1.13
34403535--34403605	22	3.3	21	76	16	74	47	15	11	25	1.78
34403510--34403636	44	2.8	45	84	5	161	43	16	14	25	1.86
34419241--34419275	14	2.5	14	90	0	52	34	22	8	34	1.85
34419963--34420208	65	4.0	62	84	8	311	44	16	5	33	1.71
34424087--34424124	17	2.2	18	85	4	51	13	18	44	23	1.85
34427672--34427899	40	5.8	40	83	6	250	19	25	19	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170