genome.fa.s16.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  94  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29397573--29397605	15	2.3	15	89	5	50	72	0	0	27	0.85
29398410--29398467	20	2.9	19	77	12	55	44	1	1	51	1.21
29398426--29398481	20	2.9	19	82	7	69	39	1	5	53	1.34
29398416--29398479	20	3.3	19	82	8	67	40	1	3	54	1.25
29402534--29402577	22	2.0	22	100	0	88	31	9	9	50	1.65
29402692--29402718	14	1.9	14	100	0	54	22	7	7	62	1.46
29406693--29406834	43	3.3	43	84	0	194	30	31	15	21	1.95
29410400--29410458	7	8.4	7	76	16	52	42	37	0	20	1.52
29410420--29410472	22	2.4	22	87	3	70	39	35	0	24	1.56
29410453--29410481	14	2.1	14	100	0	58	27	44	0	27	1.54
29410750--29410877	7	18.1	7	68	13	57	45	35	1	17	1.58
29410751--29410790	21	2.0	21	95	5	73	52	30	0	17	1.45
29410750--29410896	14	10.4	14	70	11	75	46	34	1	17	1.57
29410829--29410896	21	3.2	21	80	2	73	50	33	1	14	1.53
29411109--29411228	41	2.9	42	89	2	179	30	26	21	20	1.98
29413523--29413550	4	7.0	4	100	0	56	25	0	25	50	1.50
29423294--29423346	23	2.4	22	76	20	56	9	18	1	69	1.25
29430392--29430430	20	2.0	20	94	0	69	35	7	5	51	1.53
29433619--29433704	27	3.2	27	80	4	95	27	18	18	34	1.95
29437748--29437781	16	2.2	15	89	5	50	55	2	0	41	1.15
29450584--29450612	6	4.8	6	100	0	58	82	0	17	0	0.66
29451570--29451609	16	2.5	16	79	0	53	72	0	5	22	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29463438--29463631	50	3.9	50	78	3	178	28	20	28	21	1.98
29465236--29465410	33	5.3	33	81	2	163	42	14	24	17	1.87
29474378--29474668	50	5.8	50	82	2	271	21	28	21	28	1.99
29485129--29485297	82	2.1	82	98	0	329	36	21	13	27	1.92
29506474--29506622	51	2.9	52	79	6	178	25	15	27	31	1.96
29506623--29506710	46	2.0	44	82	8	106	25	17	23	34	1.96
29508850--29508900	25	2.0	25	96	0	93	31	25	11	31	1.92
29512105--29512152	22	2.2	22	85	3	62	31	10	25	33	1.89
29516081--29516122	7	6.0	7	88	0	57	19	50	0	30	1.48
29516082--29516123	21	2.0	21	90	9	68	21	47	0	30	1.51
29527073--29527257	51	3.7	50	79	6	221	29	28	18	23	1.98
29527071--29527255	101	1.8	101	90	3	300	29	28	18	23	1.98
29530838--29530868	16	2.0	15	93	6	53	32	32	12	22	1.92
29531097--29531138	21	2.0	21	95	0	75	38	21	0	40	1.53
29537275--29537365	33	2.8	33	81	0	110	15	21	15	47	1.82
29538926--29538973	24	2.0	24	95	0	87	39	4	35	20	1.72
29553101--29553153	28	1.9	27	84	3	70	49	1	5	43	1.37
29553101--29553160	28	2.2	28	81	3	68	46	1	8	43	1.43
29557722--29557783	27	2.3	27	86	8	83	41	20	17	19	1.90
29559927--29559968	22	2.0	22	86	13	63	54	0	0	45	0.99
29559930--29559963	16	2.2	15	89	5	50	55	0	0	44	0.99
29563972--29564005	12	2.7	13	90	9	61	52	5	32	8	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29564639--29564692	28	2.0	28	88	3	83	46	1	7	44	1.42
29564826--29565114	68	4.2	67	83	5	305	35	17	22	23	1.95
29564825--29565114	136	2.1	136	82	4	352	36	17	22	23	1.95
29570341--29570426	45	1.9	45	87	0	127	41	12	23	22	1.88
29575826--29576355	265	2.0	265	94	0	936	31	15	19	33	1.93
29586644--29586691	18	2.7	18	78	18	55	70	2	0	27	0.98
29586984--29587039	10	5.6	10	79	12	53	33	1	0	64	1.04
29586981--29587039	11	5.9	10	77	18	52	33	1	0	64	1.04
29587278--29587320	18	2.4	18	92	0	68	30	2	0	67	1.03
29592618--29592752	44	3.1	44	69	14	145	45	20	7	27	1.77
29592858--29593026	91	1.9	91	91	2	277	27	8	7	56	1.55
29593517--29593556	21	1.9	21	89	0	62	15	20	37	27	1.92
29594472--29594496	12	2.1	12	100	0	50	64	8	0	28	1.22
29609339--29609377	15	2.4	16	87	8	53	35	0	0	64	0.94
29609789--29609844	21	2.6	22	86	8	71	57	1	0	41	1.09
29626101--29626184	17	4.9	17	71	0	60	26	10	17	45	1.81
29626111--29626210	51	2.0	51	83	0	128	29	8	17	46	1.76
29629020--29629068	22	2.2	22	100	0	98	32	0	14	53	1.41
29629449--29629492	21	2.1	21	87	8	63	61	0	0	38	0.96
29631419--29631484	27	2.5	27	83	13	77	27	6	1	65	1.25
29633982--29634020	12	3.2	12	88	0	60	15	12	38	33	1.85
29634015--29634160	63	2.3	63	82	2	177	28	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29637423--29637464	13	3.2	13	80	12	59	42	9	14	33	1.78
29637423--29637475	26	2.0	26	88	0	79	41	13	15	30	1.85
29638016--29638135	57	2.1	57	93	0	204	24	18	25	32	1.97
29638191--29638309	53	2.2	53	79	5	134	35	20	15	28	1.94
29640473--29640636	76	2.1	76	78	13	176	31	9	8	51	1.64
29642372--29642409	19	2.0	19	90	10	60	28	5	0	65	1.14
29644890--29645020	65	2.0	64	98	1	253	54	8	18	19	1.68
29645908--29646349	131	3.4	131	87	2	593	25	23	20	30	1.99
29646317--29646515	45	4.5	44	69	12	129	25	21	23	30	1.99
29646455--29646576	44	2.7	45	70	12	106	22	26	21	29	1.99
29646319--29646663	177	1.9	177	82	1	431	24	24	22	28	2.00
29646294--29646700	88	4.6	88	80	1	393	23	25	23	28	2.00
29646642--29646757	57	2.0	57	89	0	178	18	28	25	27	1.98
29646548--29646845	145	2.1	145	88	2	438	20	27	26	25	1.99
29646693--29646883	88	2.2	88	91	1	303	20	25	27	26	1.99
29646704--29646851	43	3.4	43	67	9	102	20	27	27	25	1.99
29653479--29653516	8	4.9	8	96	3	69	63	0	0	36	0.95
29653487--29653534	16	3.0	16	87	6	62	70	0	2	27	0.98
29657190--29657254	22	3.0	23	74	19	66	44	13	4	36	1.65
29658654--29658711	30	2.0	28	86	6	80	60	0	3	36	1.14
29659025--29659062	20	1.9	20	94	0	67	39	2	0	57	1.12
29659073--29659138	28	2.3	29	87	10	100	34	0	1	63	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29659026--29659150	20	6.3	18	72	14	63	31	2	1	64	1.15
29659095--29659151	19	2.9	20	82	10	64	28	0	1	70	0.98
29660207--29660236	2	15.0	2	100	0	60	50	0	0	50	1.00
29666601--29666629	12	2.4	12	100	0	58	20	24	48	6	1.74
29675771--29675818	25	1.9	25	91	0	78	33	16	27	22	1.96
29678566--29678605	20	2.0	20	100	0	80	50	30	15	5	1.65
29679438--29679476	14	2.7	15	84	8	62	71	2	0	25	0.98
29681112--29681283	50	3.4	51	83	3	206	27	21	29	21	1.99
29681124--29681304	100	1.8	100	79	2	211	25	20	30	23	1.98
29685126--29685176	26	2.0	26	96	0	93	9	33	9	47	1.70
29685964--29686021	30	1.9	30	100	0	116	34	20	10	34	1.87
29687930--29687955	3	8.7	3	100	0	52	30	0	0	69	0.89
29688033--29688065	17	1.9	17	100	0	66	63	0	0	36	0.95
29688271--29688303	17	1.9	17	100	0	66	36	0	0	63	0.95
29690546--29690595	18	2.7	18	87	3	64	2	18	2	78	0.95
29692980--29693066	33	2.6	33	83	0	111	28	11	18	41	1.85
29694667--29694747	37	2.2	37	82	10	94	53	1	8	37	1.40
29695787--29695872	44	1.9	45	83	6	113	19	24	20	34	1.96
29695901--29696013	44	2.6	45	81	5	133	30	21	17	30	1.96
29695850--29696013	87	1.9	87	81	5	197	28	21	19	29	1.98
29696117--29696996	44	20.2	44	78	10	430	29	26	17	26	1.98
29696020--29696403	176	2.2	176	88	5	571	26	23	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29696020--29696274	88	2.9	86	67	11	203	25	24	21	27	2.00
29696328--29697010	88	7.9	88	86	4	915	30	27	16	25	1.97
29696307--29697009	132	5.4	132	86	4	944	30	26	17	25	1.97
29696728--29696792	34	1.9	34	87	0	94	30	23	23	23	1.99
29703449--29703492	23	2.0	22	90	4	70	56	2	6	34	1.38
29704213--29704268	21	2.8	19	82	10	76	35	17	8	37	1.82
29704224--29704267	21	2.1	21	100	0	88	38	13	9	38	1.77
29704818--29704979	44	3.7	44	77	6	132	29	22	17	30	1.97
29704955--29705231	88	3.1	89	70	8	260	24	26	19	29	1.98
29704911--29705361	44	10.2	44	71	10	183	27	24	18	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170