genome.fa.s16.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  136  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41245107--41245169	29	2.1	30	88	2	92	36	0	1	61	1.05
41245259--41245314	24	2.3	23	77	19	60	28	0	5	66	1.14
41247400--41247953	28	20.4	28	76	18	453	46	24	0	28	1.54
41247408--41247974	23	21.2	23	69	23	209	46	23	0	29	1.54
41247592--41247663	34	2.1	34	92	0	117	45	27	0	26	1.54
41247387--41247956	108	5.2	108	86	8	783	47	24	0	28	1.54
41247700--41247771	34	2.1	34	86	0	99	43	29	0	27	1.56
41251071--41251275	84	2.4	85	95	1	367	31	23	20	23	1.98
41251185--41251464	124	2.3	124	85	4	377	33	23	14	28	1.94
41254281--41254330	18	2.8	18	78	0	55	46	4	12	38	1.60
41256271--41256366	41	2.3	41	90	0	156	34	19	17	28	1.95
41256578--41256792	68	3.2	64	77	12	211	39	15	6	38	1.72
41259446--41259481	6	6.0	6	100	0	72	50	0	0	50	1.00
41260562--41260602	21	2.0	21	95	0	73	39	14	26	19	1.90
41263966--41264033	34	2.0	34	85	5	93	20	26	23	29	1.99
41271099--41271256	67	2.4	67	95	0	280	28	24	24	22	1.99
41273291--41273347	14	4.2	13	75	20	55	40	26	7	26	1.81
41276516--41276553	5	7.8	5	94	5	69	0	15	0	84	0.63
41286916--41287032	62	1.9	59	86	5	162	41	5	4	48	1.45
41291910--41293105	132	9.1	132	90	1	1723	27	23	19	28	1.98
41294446--41294487	7	6.0	7	79	20	52	14	16	0	69	1.20
41301107--41301195	42	2.1	42	97	0	169	35	24	10	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41301319--41301451	49	2.7	49	90	0	203	33	25	13	27	1.93
41302637--41302735	23	4.3	23	90	0	162	29	27	21	22	1.99
41304309--41304381	19	3.6	19	68	20	58	53	4	2	39	1.34
41304879--41304937	20	2.8	22	80	15	61	35	0	8	55	1.30
41314291--41314361	35	2.0	35	97	0	133	38	15	9	36	1.81
41318149--41318181	16	2.0	17	94	5	59	39	0	0	60	0.97
41318614--41318651	18	2.1	18	90	0	58	65	7	2	23	1.32
41318865--41318920	20	2.6	22	83	5	71	44	3	1	50	1.29
41318993--41319025	17	1.9	17	88	11	50	60	0	3	36	1.12
41319651--41319712	26	2.3	27	83	2	90	43	1	3	51	1.27
41319752--41319856	48	2.2	48	91	3	167	25	4	11	58	1.53
41319912--41319969	26	2.1	28	84	6	75	44	1	5	48	1.35
41320056--41320084	15	2.0	15	93	6	51	24	6	6	62	1.45
41325386--41325436	23	2.2	23	89	0	75	27	7	21	43	1.80
41326171--41326228	28	2.1	28	100	0	116	32	17	29	20	1.95
41326334--41326407	28	2.6	28	86	0	103	28	25	21	24	1.99
41326762--41327201	27	16.4	26	83	4	425	17	18	19	44	1.87
41326761--41327201	81	5.5	80	84	5	482	17	18	19	44	1.87
41333918--41333953	15	2.5	14	86	8	54	44	8	0	47	1.33
41335554--41335612	10	5.9	10	80	11	59	74	0	5	20	1.00
41342023--41342058	15	2.5	14	86	8	54	44	8	0	47	1.33
41342974--41343014	20	2.0	21	90	4	66	46	0	17	36	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41343058--41343217	47	3.4	47	85	1	214	31	12	20	35	1.90
41344362--41344403	21	2.0	21	90	0	66	30	4	19	45	1.71
41344613--41344656	22	1.9	24	86	9	65	40	13	2	43	1.57
41348366--41348427	3	21.0	3	93	3	108	1	32	0	66	1.02
41348688--41348854	57	2.9	56	78	7	176	40	5	33	20	1.77
41348868--41348925	30	1.9	30	92	0	98	39	1	29	29	1.67
41349490--41349519	15	2.0	15	100	0	60	46	13	20	20	1.83
41354365--41354410	22	2.1	22	100	0	92	21	36	8	32	1.84
41356847--41356890	17	2.6	17	85	3	54	45	0	6	47	1.29
41357783--41358003	103	2.1	102	86	4	302	41	12	16	30	1.85
41357942--41358055	52	2.2	52	95	1	201	49	9	11	29	1.71
41360429--41360465	16	2.2	18	80	9	51	37	10	5	45	1.62
41360430--41360465	17	2.2	17	90	5	56	36	11	5	47	1.63
41360523--41360978	98	4.5	99	82	8	519	30	16	15	37	1.90
41360567--41360965	208	1.9	204	85	5	552	30	16	14	37	1.89
41360773--41360982	97	2.2	96	87	3	323	28	16	13	42	1.85
41363964--41363994	16	1.9	16	93	0	53	48	6	6	38	1.55
41364946--41364970	5	5.0	5	100	0	50	20	0	0	80	0.72
41366604--41366643	15	2.7	15	88	7	55	27	20	12	40	1.88
41368816--41368876	8	7.5	8	80	8	70	3	21	0	75	0.94
41368820--41368876	25	2.3	24	80	14	62	3	22	0	73	0.98
41370798--41370841	17	2.6	18	85	7	56	50	0	6	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41385216--41385339	43	2.9	43	78	9	144	20	16	29	33	1.95
41386713--41386742	6	5.0	6	95	0	51	36	0	13	50	1.42
41393275--41393388	43	2.7	43	78	8	115	21	20	28	28	1.98
41402990--41403208	38	5.8	38	74	5	147	34	26	15	23	1.94
41404688--41404758	26	2.8	26	89	2	108	36	7	22	33	1.81
41422257--41422292	19	1.9	19	88	5	56	58	2	2	36	1.27
41436684--41436708	7	3.6	7	100	0	50	28	0	16	56	1.41
41439011--41439430	126	3.3	127	90	1	666	27	19	16	36	1.94
41439462--41439891	97	4.4	96	85	5	517	38	18	1	40	1.60
41439461--41439891	193	2.2	197	84	6	554	38	18	1	40	1.60
41440462--41440496	10	3.2	11	88	12	54	17	37	5	40	1.73
41440479--41440534	22	2.5	22	88	8	78	28	30	1	39	1.67
41440506--41440621	51	2.3	51	92	0	187	29	23	0	47	1.52
41441998--41442066	23	3.1	23	73	14	72	44	26	1	27	1.63
41442030--41442077	23	2.0	23	84	4	60	43	27	0	29	1.55
41444660--41445027	125	3.0	124	83	3	452	34	20	15	29	1.93
41448066--41448130	22	2.9	22	80	14	71	33	4	4	56	1.40
41448302--41448345	18	2.5	17	82	10	52	22	2	0	75	0.92
41450242--41450299	30	1.9	30	89	0	89	41	3	24	31	1.71
41450512--41450544	13	2.4	14	90	5	50	30	0	12	57	1.35
41450639--41450880	50	4.7	50	86	4	297	26	24	29	19	1.99
41450639--41450888	100	2.4	103	88	6	364	26	24	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41457791--41457851	32	1.9	32	83	3	79	40	3	24	31	1.71
41458065--41458096	13	2.5	13	94	0	55	31	0	12	56	1.37
41458191--41458438	50	4.9	50	79	11	247	27	24	29	18	1.98
41458246--41458429	96	1.9	96	90	4	291	27	23	30	17	1.97
41458246--41458380	46	2.8	47	78	15	143	27	22	32	17	1.96
41463149--41463191	13	3.4	13	83	3	52	79	4	9	6	1.06
41467456--41467502	21	2.3	21	81	3	60	65	0	4	29	1.11
41478540--41478600	32	1.9	32	83	12	81	44	4	1	49	1.33
41478720--41478780	32	1.9	32	83	12	81	49	1	4	44	1.33
41478739--41478780	20	2.1	20	86	0	57	47	0	7	45	1.30
41478878--41478930	25	2.1	25	100	0	106	49	28	3	18	1.65
41480859--41480892	15	2.2	16	89	5	52	38	0	14	47	1.45
41482968--41483328	27	13.4	27	83	2	404	20	18	20	40	1.91
41487416--41487459	23	1.9	22	82	17	54	36	27	0	36	1.57
41490387--41490428	20	2.1	20	86	0	57	47	0	9	42	1.36
41491929--41492163	32	7.4	32	87	2	269	39	19	20	21	1.93
41492154--41492210	26	2.2	26	83	0	69	33	28	24	14	1.94
41492335--41492392	24	2.4	24	88	5	82	50	24	8	17	1.74
41492452--41492609	27	5.9	27	82	3	174	25	21	17	36	1.94
41492452--41492594	54	2.6	54	87	4	209	25	20	18	34	1.95
41492571--41492650	27	3.0	27	83	3	90	20	18	18	42	1.89
41492452--41492650	54	3.7	54	77	11	149	23	20	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41500287--41500323	16	2.3	16	86	13	58	40	0	0	59	0.97
41500335--41500409	26	2.9	25	70	16	64	53	2	1	42	1.23
41500462--41500486	6	4.2	6	100	0	50	80	0	0	20	0.72
41509261--41509303	20	2.1	21	83	12	54	44	4	6	44	1.52
41513062--41513101	15	2.3	19	80	20	52	25	10	7	57	1.57
41513090--41513135	23	2.0	23	82	0	56	17	6	13	63	1.50
41517146--41517190	15	3.1	14	78	12	54	22	4	0	73	1.01
41526422--41526923	23	21.5	23	72	4	369	41	18	14	26	1.88
41526285--41526478	75	2.7	71	88	7	300	39	19	11	29	1.87
41526471--41526925	141	3.2	141	90	0	689	41	18	14	25	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170