genome.fa.s16.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  128  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39046361--39046622	113	2.3	112	83	5	316	49	18	3	27	1.65
39054061--39054148	44	2.0	45	82	6	110	40	1	0	57	1.06
39058301--39058347	22	2.1	22	100	0	94	48	8	0	42	1.33
39062129--39062453	51	6.3	51	84	6	411	29	23	15	32	1.95
39067952--39067994	13	3.4	13	87	3	52	11	6	2	79	1.02
39067983--39068011	8	3.8	8	90	9	51	34	0	0	65	0.93
39068041--39068097	26	2.2	26	83	0	69	35	0	1	63	1.05
39069261--39069348	23	3.6	23	75	15	70	55	5	2	36	1.36
39070336--39070415	21	4.0	21	84	9	105	35	15	11	38	1.83
39070713--39070738	4	6.5	4	100	0	52	50	0	0	50	1.00
39071979--39072009	15	2.1	15	100	0	62	35	19	12	32	1.90
39072756--39072846	21	4.3	21	90	8	132	43	0	0	56	0.99
39072756--39072846	42	2.1	42	92	6	148	43	0	0	56	0.99
39072892--39072921	9	3.2	9	95	4	51	40	0	0	60	0.97
39072850--39073088	69	3.1	78	68	26	204	36	2	3	57	1.27
39072934--39072978	21	2.1	21	100	0	90	31	0	4	64	1.13
39072906--39073001	30	3.2	30	72	13	90	37	0	2	60	1.09
39073048--39073127	29	2.8	27	78	16	81	40	0	1	58	1.06
39072858--39073125	148	1.8	147	82	13	352	37	1	2	57	1.25
39073103--39073137	11	3.1	11	91	4	52	48	0	0	51	1.00
39073045--39073145	29	3.4	29	72	16	73	43	0	0	55	1.06
39073103--39073140	12	3.2	12	85	7	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39073078--39073145	30	2.3	30	80	10	77	47	0	0	52	1.00
39072854--39073157	148	2.1	145	79	14	336	39	1	2	56	1.23
39076467--39076570	30	3.5	30	86	2	129	26	21	26	25	1.99
39078850--39078886	9	4.1	9	89	0	56	29	8	13	48	1.71
39078935--39078972	18	2.1	18	95	0	67	36	18	10	34	1.85
39080446--39080495	19	2.6	19	81	12	75	32	0	0	68	0.90
39080601--39080714	22	5.0	22	70	9	86	57	1	2	37	1.23
39080777--39080817	21	1.9	22	90	5	66	58	0	0	41	0.98
39080771--39080853	35	2.3	36	89	6	132	59	1	0	39	1.05
39080894--39080976	9	9.5	8	71	16	58	75	3	3	16	1.08
39080881--39080928	13	3.9	13	81	13	57	75	6	0	18	1.01
39082657--39082687	9	3.4	9	90	0	53	25	12	22	38	1.90
39087984--39088012	15	1.9	15	100	0	58	31	13	27	27	1.94
39092675--39092746	26	2.7	26	81	8	83	43	8	15	33	1.76
39096704--39096741	20	1.9	20	88	0	58	55	0	13	31	1.38
39096735--39096778	18	2.4	18	81	7	54	52	4	4	38	1.42
39096750--39096793	22	1.9	22	81	9	52	54	2	6	36	1.40
39096806--39096854	20	2.5	20	86	0	71	55	0	8	36	1.30
39096842--39096933	16	5.9	15	74	20	64	55	4	5	34	1.43
39096696--39096916	108	2.0	107	90	3	345	54	3	7	34	1.45
39096862--39096960	46	2.2	46	98	0	189	57	4	5	33	1.39
39097886--39097943	22	2.6	22	84	7	73	43	17	3	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39097899--39097996	19	4.8	19	85	9	106	38	16	8	36	1.78
39097933--39097995	21	3.1	21	90	9	112	38	14	9	38	1.78
39106918--39106951	5	6.8	5	100	0	68	82	0	17	0	0.67
39107731--39107797	29	2.3	29	94	0	116	29	25	31	13	1.94
39108981--39109057	30	2.6	30	81	2	84	18	27	29	24	1.98
39109140--39109188	10	4.8	10	85	10	55	14	0	4	81	0.83
39109144--39109191	19	2.5	20	82	3	62	14	0	4	81	0.84
39110096--39110129	5	6.8	5	96	0	59	85	0	14	0	0.60
39110909--39110975	29	2.3	29	94	0	116	29	25	31	13	1.94
39112160--39112236	30	2.6	30	81	2	84	18	27	29	24	1.98
39112306--39112351	17	2.9	16	81	12	51	19	2	4	73	1.10
39114073--39114139	29	2.3	29	89	0	107	31	25	29	13	1.94
39115553--39115584	14	2.2	15	94	5	57	31	0	0	68	0.90
39120121--39120192	30	2.4	30	93	4	119	23	15	31	29	1.95
39122092--39122175	21	4.0	20	80	9	80	36	22	22	17	1.94
39122609--39122654	14	3.3	14	79	11	58	0	26	0	73	0.83
39122615--39122656	18	2.3	19	84	12	61	0	26	0	73	0.83
39122874--39122913	20	1.9	22	90	10	66	52	0	0	47	1.00
39122874--39122940	28	2.3	30	78	14	70	55	1	1	41	1.18
39123815--39123872	21	2.8	20	84	2	71	37	24	20	17	1.93
39123849--39123916	23	2.9	24	80	6	95	36	19	19	25	1.94
39124611--39124650	20	1.9	20	85	10	53	52	2	0	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39125547--39125653	23	4.9	23	72	11	82	37	18	19	24	1.94
39127293--39127398	23	4.9	21	73	7	70	38	18	20	21	1.93
39127321--39127388	23	2.9	24	78	6	86	36	17	19	26	1.94
39127933--39127963	14	2.2	14	94	0	53	61	3	0	35	1.12
39128075--39128114	20	1.9	22	90	10	66	52	0	0	47	1.00
39128075--39128141	28	2.3	30	78	14	70	55	1	1	41	1.18
39129011--39129117	23	4.9	23	82	11	127	36	22	20	20	1.95
39129011--39129125	46	2.7	42	83	10	144	38	22	20	19	1.94
39129553--39129585	17	1.9	17	93	0	57	0	24	0	75	0.80
39129809--39129848	20	1.9	22	90	10	66	52	0	0	47	1.00
39129809--39129875	28	2.3	30	78	14	70	55	2	0	41	1.15
39130755--39130860	23	4.9	21	73	7	70	38	18	20	21	1.93
39130783--39130850	23	2.9	24	78	6	86	36	17	19	26	1.94
39131537--39131576	20	1.9	22	90	10	66	52	0	0	47	1.00
39131537--39131603	28	2.3	30	78	14	70	55	1	1	41	1.18
39132479--39132550	21	3.4	20	81	7	81	38	22	20	18	1.93
39132474--39132580	23	4.9	23	77	11	109	36	21	19	22	1.95
39133275--39133526	5	51.6	5	87	10	380	58	0	0	40	1.01
39137153--39137265	41	2.7	41	83	5	120	30	15	29	24	1.96
39143975--39144062	35	2.5	35	84	0	131	15	10	32	40	1.81
39149759--39149815	28	2.0	28	100	0	114	28	31	10	29	1.90
39149878--39149917	20	1.9	22	85	10	57	37	15	0	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39149878--39149925	21	2.3	21	82	13	55	37	16	0	45	1.48
39149965--39150020	29	1.9	29	96	0	103	55	5	0	39	1.23
39150011--39150060	24	2.1	24	85	7	66	72	4	0	24	1.02
39150473--39150557	20	4.3	20	73	7	68	63	0	4	31	1.15
39150451--39150544	19	5.1	18	72	17	68	57	1	5	36	1.28
39155594--39155657	19	3.1	21	76	15	62	39	3	1	56	1.25
39155614--39155686	19	3.8	19	75	5	76	35	4	0	60	1.16
39155645--39155717	28	2.5	29	84	6	94	30	4	2	63	1.27
39156410--39156462	18	2.9	17	78	10	61	1	16	49	32	1.57
39156423--39156455	6	5.7	6	89	3	50	3	15	51	30	1.58
39172514--39172584	31	2.2	33	83	14	87	36	4	9	49	1.56
39173025--39173080	18	3.1	18	76	0	58	28	3	23	44	1.70
39173738--39173805	17	4.0	17	70	0	55	26	5	19	48	1.71
39173720--39173831	51	2.2	51	82	4	136	30	7	16	45	1.75
39176135--39176192	24	2.5	24	86	8	75	44	24	17	13	1.85
39180144--39180172	11	2.7	11	94	5	51	44	0	0	55	0.99
39180153--39180335	59	3.2	58	73	12	141	48	3	4	43	1.42
39180253--39180296	16	2.7	16	89	10	63	52	6	6	34	1.55
39186026--39186072	23	2.0	23	91	0	76	46	6	21	25	1.74
39191223--39191364	67	2.1	69	94	5	254	40	14	7	38	1.73
39199012--39199053	21	2.0	21	85	0	57	19	21	19	40	1.92
39201987--39202048	26	2.4	26	91	5	99	43	16	9	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39211162--39211231	24	2.9	24	87	4	97	17	21	7	54	1.66
39211198--39211336	40	3.5	40	77	12	133	20	24	7	47	1.75
39213425--39213465	14	2.8	15	78	14	50	53	2	0	43	1.13
39213444--39213502	23	2.5	23	81	15	68	47	0	3	49	1.18
39215620--39215645	13	2.0	13	100	0	52	30	7	7	53	1.57
39223476--39223527	27	2.0	26	85	11	70	71	7	1	19	1.20
39224109--39224580	132	3.6	132	93	2	771	23	25	20	30	1.98
39224263--39224579	44	7.2	44	62	14	125	24	24	20	29	1.99
39237395--39237450	30	2.0	29	86	10	80	69	8	1	19	1.24
39247014--39247055	22	1.9	22	90	0	66	52	40	4	2	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170