genome.fa.s16.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  57  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16637592--16637648	29	1.9	30	85	3	80	33	8	12	45	1.72
16639005--16639056	15	3.6	15	69	10	54	23	13	38	25	1.91
16645674--16646013	47	7.1	47	97	1	617	31	8	30	30	1.86
16646132--16646210	37	2.1	37	88	0	113	24	17	31	26	1.97
16649171--16649217	24	2.0	24	86	0	67	25	10	17	46	1.79
16649201--16649238	18	2.1	18	95	0	67	23	10	18	47	1.79
16651320--16651415	47	2.0	47	100	0	192	51	10	6	32	1.61
16653143--16653757	44	13.9	44	69	13	235	28	20	19	31	1.97
16653143--16653754	89	7.0	87	71	14	287	28	20	19	31	1.97
16654770--16654802	14	2.3	15	89	5	50	24	33	15	27	1.95
16659782--16659842	23	2.5	22	80	15	59	68	4	4	21	1.27
16659833--16659880	11	3.4	15	75	24	59	66	0	6	27	1.15
16659818--16659893	27	2.8	28	82	15	88	65	0	7	26	1.19
16659837--16659894	12	4.5	12	77	14	62	67	0	6	25	1.16
16659833--16659894	4	15.8	4	73	9	56	67	0	6	25	1.14
16664245--16664319	33	2.4	29	78	8	78	41	1	2	54	1.23
16664255--16664320	28	2.3	28	80	10	80	40	1	3	54	1.25
16664328--16664367	16	2.4	16	87	8	53	52	0	5	42	1.23
16664306--16664383	40	2.0	40	89	0	120	52	2	5	39	1.37
16664400--16664448	24	2.0	24	84	7	64	42	2	0	55	1.11
16664414--16664471	23	2.5	23	81	10	57	37	1	1	58	1.18
16664418--16664480	19	3.3	19	78	12	67	38	3	3	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16664450--16664488	19	2.1	19	85	0	51	38	5	5	51	1.46
16679668--16679705	11	3.4	11	88	3	58	18	34	2	44	1.64
16682031--16682076	15	3.0	16	84	9	60	47	34	0	17	1.48
16682024--16682506	22	22.1	22	79	10	476	43	31	0	24	1.60
16682024--16682464	65	6.8	63	83	7	464	43	31	0	23	1.60
16682368--16682506	50	2.9	49	76	19	159	42	31	1	24	1.64
16682432--16682492	29	2.1	29	96	0	113	40	32	1	24	1.65
16682411--16682508	50	1.9	51	93	2	171	40	32	2	24	1.67
16682503--16682808	125	2.4	126	86	4	393	31	22	15	30	1.95
16684159--16684191	6	5.5	6	100	0	66	0	15	0	84	0.61
16689039--16689076	19	2.1	18	90	5	58	47	7	10	34	1.67
16691200--16691266	34	2.0	34	90	0	107	47	8	22	20	1.78
16698114--16698154	3	13.7	3	100	0	82	0	31	0	68	0.90
16700660--16700697	15	2.5	15	100	0	76	0	13	0	86	0.56
16706550--16706585	18	2.1	16	90	10	54	0	11	0	88	0.50
16706554--16706582	13	2.3	13	94	5	51	0	10	0	89	0.48
16715851--16715915	22	2.9	22	88	4	58	30	29	0	40	1.57
16715860--16715915	22	2.5	22	97	2	103	28	30	0	41	1.57
16715868--16715967	52	1.9	52	93	0	173	29	32	0	39	1.57
16715920--16715970	22	2.3	22	90	6	77	31	33	0	35	1.58
16716006--16716061	28	2.0	28	89	6	87	41	0	1	57	1.09
16716008--16716068	29	2.1	28	85	8	79	40	0	1	57	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16717150--16717174	7	3.6	7	100	0	50	28	0	12	60	1.32
16718338--16718475	29	4.6	28	83	15	177	44	20	0	34	1.57
16718349--16718451	35	3.1	34	82	17	144	44	24	0	31	1.54
16720065--16720286	41	5.4	41	91	0	345	23	27	20	27	1.99
16723001--16723280	124	2.3	124	86	4	386	31	21	15	31	1.94
16724066--16724105	20	2.0	20	90	0	62	32	10	7	50	1.64
16724204--16724242	20	2.0	20	94	0	69	48	2	0	48	1.15
16733596--16733711	61	1.9	59	86	5	162	49	4	4	42	1.42
16733696--16733746	25	2.0	25	85	7	68	50	3	1	43	1.31
16736780--16737063	155	1.8	156	89	5	450	42	11	4	41	1.61
16736780--16737090	154	2.0	155	86	5	441	41	11	4	43	1.60
16740940--16741175	42	5.6	43	76	9	202	22	17	25	34	1.96
16740940--16741175	85	2.8	84	86	1	310	22	17	25	34	1.96
16746714--16746755	22	2.0	21	81	13	50	38	7	4	50	1.51
16753172--16753429	129	2.0	129	98	0	498	41	16	18	23	1.89
16758756--16758823	16	4.2	16	96	0	127	26	0	35	38	1.57
16759020--16759087	16	4.2	16	90	0	100	27	0	36	35	1.58
16758744--16759267	264	2.0	264	95	0	951	33	5	25	35	1.80
16759312--16759353	15	2.9	15	82	10	52	50	0	0	50	1.00
16759301--16759511	107	2.0	108	96	0	388	48	5	1	44	1.35
16759406--16759451	16	2.9	16	78	12	51	52	2	0	45	1.13
16759406--16759460	15	3.7	15	79	13	53	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16759339--16759509	37	4.7	35	67	20	102	47	6	1	43	1.39
16759304--16759567	107	2.5	107	87	6	344	50	4	1	43	1.33
16765574--16765626	21	2.5	21	93	0	88	30	37	9	22	1.86
16770259--16770373	19	5.8	19	85	11	160	35	17	10	36	1.84
16770252--16770369	40	3.0	39	91	4	184	35	17	10	36	1.84
16770252--16770373	59	2.1	56	86	11	167	35	18	9	36	1.84
16770690--16771001	44	7.1	44	64	9	134	28	25	19	27	1.98
16770602--16771277	132	5.1	132	91	1	1054	29	23	19	27	1.98
16772578--16772611	6	6.0	6	93	6	54	0	17	0	82	0.67
16772578--16772614	16	2.3	17	90	9	60	0	16	0	83	0.64
16775203--16775248	24	1.9	24	86	0	65	10	26	17	45	1.81
16778208--16778282	19	3.8	19	89	6	123	36	18	10	34	1.86
16778201--16778278	40	2.0	38	92	5	129	35	19	10	34	1.85
16791283--16791424	27	5.3	26	74	9	117	48	19	14	17	1.81
16791338--16791408	26	2.7	26	82	4	72	52	21	9	16	1.73
16791759--16791823	28	2.3	28	97	0	121	21	29	23	26	1.99
16798908--16798938	9	3.3	9	95	4	53	22	9	25	41	1.84
16802278--16802308	3	10.3	3	100	0	62	67	32	0	0	0.91
16806360--16806392	17	1.9	17	93	0	57	21	12	15	51	1.75
16808157--16808251	41	2.4	39	77	11	97	58	3	4	33	1.33
16809819--16809979	44	3.7	43	74	9	141	25	19	24	29	1.99
16810330--16810386	24	2.4	24	96	0	105	29	28	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16815467--16815539	27	2.7	27	85	4	85	16	17	19	46	1.84
16815691--16815820	44	2.9	45	87	4	183	24	20	11	43	1.85
16815752--16815820	23	3.1	21	64	24	52	21	21	10	46	1.81
16817708--16817768	27	2.3	27	80	2	79	21	26	16	36	1.94
16824164--16824455	50	5.9	50	82	2	286	29	20	28	22	1.98
16828748--16828862	27	4.3	26	79	8	106	44	20	18	17	1.87
16829028--16829127	26	3.9	26	76	8	98	17	20	24	39	1.92
16829260--16829318	30	2.0	30	89	0	91	23	27	22	27	1.99
16843905--16844267	27	13.5	26	79	7	320	42	20	16	20	1.89
16843908--16844267	54	6.7	53	82	3	416	42	20	16	20	1.89
16843908--16844269	107	3.4	105	82	7	415	42	20	16	20	1.89
16843907--16844269	80	4.5	80	83	5	243	42	20	16	20	1.89
16844362--16844411	25	2.0	25	96	0	91	32	10	12	46	1.74
16847426--16847528	51	2.0	51	92	0	170	26	22	20	31	1.98
16866051--16866090	18	2.2	18	100	0	80	27	10	22	40	1.86
16876196--16876299	37	2.8	37	88	1	156	44	24	13	18	1.85
16882364--16882397	18	1.9	18	88	5	52	32	20	11	35	1.89
16885281--16885378	39	2.5	38	90	4	151	43	13	7	35	1.71
16886482--16886664	40	4.6	40	81	2	206	20	30	15	33	1.94
16886482--16886664	80	2.3	80	85	3	235	20	30	15	33	1.94
16889941--16889984	17	2.6	17	86	10	56	52	2	13	31	1.53
16892369--16892628	40	6.5	40	83	1	281	20	30	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16897227--16897389	54	3.0	54	81	9	188	33	14	27	25	1.94
16899904--16899939	16	2.2	17	95	5	65	36	0	0	63	0.94
16900325--16900360	19	1.9	18	88	5	54	50	2	0	47	1.15
16900430--16900456	10	2.7	10	100	0	54	59	0	0	40	0.98
16905350--16905387	18	2.0	18	90	10	58	39	7	0	52	1.31
16906314--16906483	59	2.9	59	98	0	322	44	9	5	40	1.59
16906513--16906572	29	2.0	30	83	6	77	50	1	1	46	1.21
16917458--16917528	25	2.8	24	79	8	61	33	26	16	22	1.96
16917475--16917827	25	14.0	24	68	9	123	37	23	11	27	1.90
16917449--16917827	76	5.0	76	82	0	384	37	23	12	26	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170