genome.fa.s16.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Length:  50986338

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   

This is table  152  of  170  ( 20315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45375037--45375955	132	7.0	132	90	2	1382	29	24	17	27	1.97
45375721--45375908	44	4.3	43	65	16	107	28	26	18	27	1.98
45377202--45377235	13	2.7	12	86	13	50	2	0	8	88	0.62
45380763--45380957	98	2.0	98	94	0	345	35	25	10	28	1.89
45382014--45382105	19	4.8	19	91	0	157	35	15	10	38	1.82
45381991--45382105	38	2.9	38	88	5	158	38	14	9	37	1.79
45384397--45384472	23	3.3	23	94	0	134	30	25	22	22	1.99
45384698--45384736	18	2.2	17	86	13	53	46	20	0	33	1.51
45385910--45385949	21	1.9	21	89	0	62	25	20	25	30	1.99
45400485--45400523	18	2.2	18	100	0	78	15	17	33	33	1.92
45400591--45400645	26	2.1	26	100	0	110	29	14	27	29	1.95
45409590--45409890	46	6.3	48	84	8	366	35	14	21	28	1.93
45409524--45409879	98	3.6	98	96	0	640	34	14	21	28	1.94
45409854--45409999	37	4.0	37	91	1	233	37	16	21	24	1.93
45415103--45415170	16	4.2	16	90	7	102	27	0	33	38	1.57
45415103--45415170	32	2.1	32	94	0	118	27	0	33	38	1.57
45424569--45424618	16	2.9	17	77	11	57	60	2	0	38	1.09
45424576--45424667	28	3.4	26	80	14	98	60	1	1	36	1.11
45424647--45424732	24	3.8	23	73	21	67	60	3	2	33	1.26
45424634--45424793	10	15.4	10	72	18	87	62	3	2	31	1.24
45424545--45424777	9	24.0	9	68	19	89	60	1	3	35	1.22
45431373--45431419	23	2.0	23	87	8	67	44	2	0	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45431909--45431957	22	2.2	22	85	0	71	57	8	14	20	1.63
45433353--45433399	16	2.9	16	81	6	60	40	2	25	31	1.68
45434031--45434059	3	9.7	3	100	0	58	34	0	0	65	0.93
45437775--45437802	6	4.7	6	100	0	56	50	14	0	35	1.43
45439771--45439797	7	3.9	7	100	0	54	29	0	0	70	0.88
45442071--45442105	18	1.9	18	100	0	70	34	2	5	57	1.37
45442110--45442184	23	3.3	23	86	0	96	32	1	16	50	1.53
45442119--45442184	13	5.5	13	71	20	63	31	1	16	50	1.55
45443800--45444396	227	2.6	225	88	3	867	34	16	20	29	1.94
45443795--45444378	114	5.1	113	72	9	499	33	16	20	29	1.94
45444184--45444578	188	2.1	188	91	0	637	31	15	21	30	1.95
45444313--45444452	74	1.9	74	86	7	203	30	18	22	28	1.97
45444313--45444471	74	2.1	74	82	6	196	33	18	20	27	1.96
45444388--45444605	114	1.9	113	79	8	246	31	15	22	29	1.95
45444923--45445021	52	1.9	52	82	0	126	24	1	33	41	1.62
45444990--45445028	7	5.6	7	87	0	60	17	0	48	33	1.48
45444994--45445041	14	3.4	14	88	0	51	22	0	43	33	1.54
45444976--45445027	21	2.5	21	87	0	77	21	0	42	36	1.53
45445087--45445183	7	13.9	7	79	4	88	22	1	46	29	1.59
45445112--45445183	14	5.2	13	87	11	99	22	0	48	29	1.51
45445112--45445207	21	4.7	21	76	15	94	21	0	44	33	1.53
45445150--45445338	95	2.0	96	81	4	220	28	1	29	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45445409--45445435	14	1.9	14	100	0	54	48	0	7	44	1.31
45445437--45445477	20	2.0	20	85	0	55	60	4	7	26	1.43
45445472--45445512	18	2.3	18	91	4	66	82	0	4	12	0.81
45445968--45446359	198	2.0	198	89	2	608	28	16	20	33	1.95
45446859--45446883	10	2.5	10	100	0	50	48	12	8	32	1.69
45447683--45447762	7	11.3	7	79	2	88	5	11	12	71	1.29
45448120--45449226	100	11.1	100	96	0	2004	39	7	3	48	1.50
45448915--45449060	47	3.1	41	67	29	112	39	7	3	49	1.48
45449462--45449712	9	28.8	9	70	12	157	45	20	3	31	1.67
45449493--45449685	25	7.4	25	71	13	131	46	18	3	31	1.67
45449619--45449723	25	4.2	25	76	11	106	45	19	2	32	1.65
45455174--45455338	66	2.5	65	84	4	206	40	19	26	13	1.88
45455315--45455448	21	6.4	21	88	0	151	34	16	43	5	1.72
45455611--45455664	9	6.2	9	75	14	51	27	0	3	68	1.06
45456067--45456108	22	1.9	22	95	0	75	40	28	21	9	1.84
45467431--45467479	9	5.4	9	80	0	53	28	2	8	61	1.36
45467689--45467734	16	2.7	17	77	9	58	39	2	0	58	1.10
45467689--45467735	18	2.7	18	80	6	62	40	2	0	57	1.11
45467708--45467760	20	2.7	19	85	11	63	43	9	0	47	1.36
45467772--45467807	18	2.0	18	88	0	54	41	5	5	47	1.50
45471106--45471149	22	2.0	22	91	4	72	40	0	6	52	1.28
45472563--45472644	31	2.7	30	76	9	78	43	8	9	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45472612--45472673	31	2.1	30	84	6	81	45	8	8	38	1.63
45472610--45472676	29	2.3	27	78	14	71	43	7	8	40	1.64
45479291--45479333	21	2.0	21	90	0	68	25	23	27	23	2.00
45480501--45480593	28	3.4	27	76	17	77	44	1	0	54	1.07
45480481--45480591	29	4.0	27	74	15	84	44	2	0	53	1.15
45483781--45483820	19	2.1	19	90	0	62	20	5	10	65	1.42
45484068--45484208	73	1.9	73	80	11	164	17	19	21	41	1.90
45485514--45485553	19	2.1	19	90	0	62	20	5	10	65	1.42
45490566--45490605	19	2.1	19	90	0	62	20	5	10	65	1.42
45498899--45498938	21	1.9	21	94	0	71	47	5	10	37	1.59
45499089--45499174	25	3.3	27	63	21	74	18	17	10	53	1.71
45501272--45501359	43	2.0	43	100	0	176	44	9	6	39	1.63
45504632--45504717	25	3.3	27	62	15	72	19	17	10	52	1.73
45511660--45511715	29	1.9	29	85	0	76	35	14	10	39	1.81
45513266--45513294	12	2.3	13	94	5	51	62	0	0	37	0.96
45515139--45515171	15	2.2	15	94	0	57	63	12	0	24	1.28
45515715--45515769	19	2.8	21	70	13	53	65	7	1	25	1.28
45517522--45517617	45	2.1	45	84	3	122	42	18	16	21	1.89
45518800--45518856	30	1.9	29	86	10	80	49	5	0	45	1.24
45518950--45518993	16	2.6	16	79	10	52	47	6	0	45	1.29
45523568--45523624	29	2.0	29	86	6	80	43	0	3	52	1.18
45523543--45523614	37	1.9	37	83	5	92	40	0	2	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45524064--45524113	22	2.3	22	85	0	64	80	6	4	10	1.02
45525026--45525158	38	3.4	38	80	7	135	22	20	27	29	1.98
45528728--45528777	19	2.4	21	87	12	77	40	0	0	60	0.97
45528732--45528769	18	2.1	19	90	5	60	36	0	0	63	0.95
45529194--45529268	31	2.4	31	79	0	87	37	9	9	44	1.69
45529507--45529594	41	2.2	41	97	2	169	48	11	5	34	1.63
45536051--45536146	25	3.8	24	77	10	77	35	21	26	16	1.95
45536221--45536302	24	3.4	24	70	12	60	30	21	29	18	1.97
45538976--45539027	15	3.2	15	73	19	50	44	0	1	53	1.11
45539108--45539151	22	2.0	22	86	0	61	43	0	0	56	0.99
45540539--45540607	36	1.9	36	81	0	84	24	7	5	62	1.44
45546495--45546534	2	20.0	2	100	0	80	50	0	50	0	1.00
45548121--45548197	29	2.6	29	81	4	91	45	15	12	25	1.82
45549967--45550078	55	2.0	55	100	0	224	32	3	19	44	1.68
45561334--45561383	16	3.1	16	85	5	66	60	0	0	40	0.97
45564577--45564603	14	1.9	14	100	0	54	37	0	0	62	0.95
45565123--45565180	29	2.0	30	82	3	73	50	3	15	31	1.61
45579412--45579469	27	2.1	27	83	0	71	32	34	22	10	1.88
45580401--45580432	3	10.7	3	100	0	64	0	65	0	34	0.93
45583510--45583565	15	3.8	15	80	4	69	50	3	16	30	1.62
45583506--45583564	29	2.0	29	93	0	100	50	1	16	30	1.55
45592758--45592786	5	6.0	5	96	4	51	20	0	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45604882--45605179	90	3.3	90	91	2	424	31	21	21	25	1.98
45604712--45605185	44	10.9	43	72	11	304	31	21	21	25	1.98
45604840--45605216	87	4.3	87	88	3	397	30	22	21	25	1.98
45605021--45605249	87	2.6	87	85	2	246	29	23	22	24	1.99
45606945--45607008	27	2.4	25	78	14	67	35	9	3	51	1.50
45607169--45607197	5	6.0	5	96	4	51	20	0	0	79	0.74
45611071--45611126	21	2.7	21	91	0	85	30	7	35	26	1.83
45611289--45611327	18	2.2	18	95	4	71	58	0	0	41	0.98
45611289--45611342	19	3.0	16	82	17	54	57	1	1	38	1.20
45611658--45611692	18	2.0	18	94	5	63	40	0	60	0	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170